View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8613_low_16 (Length: 249)
Name: NF8613_low_16
Description: NF8613
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8613_low_16 |
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Alignment Details
Target: chr2 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 17 - 237
Target Start/End: Complemental strand, 42795778 - 42795558
Alignment:
| Q |
17 |
aattaattgcataccacggtggagaattatctttcgagactcatacgcaatgtgagagagaatgatgtgattgaagttttgagcatatcctttttcttgg |
116 |
Q |
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| T |
42795778 |
aattaattgcataccacggtggaaaattatctttcgagactcatacgcaatgtgagagagaatgatgtgattgaagttttgagcatatcctttttcttgg |
42795679 |
T |
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| Q |
117 |
tcgggataagttctcttgattaaatcgcatcattgtttttcttctttctgatactaatatctttgatttactatcactttccaaatttgaatgacataat |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42795678 |
tcgggataagttctcttgattaaatcgcatcattgtttttcttctttctgatactaatatctttgatttactatcactttccaaatttgaatgacataat |
42795579 |
T |
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| Q |
217 |
actatatatttcttcttctca |
237 |
Q |
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|||| |||||||||||||||| |
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| T |
42795578 |
actacatatttcttcttctca |
42795558 |
T |
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