View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8613_low_17 (Length: 205)

Name: NF8613_low_17
Description: NF8613
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8613_low_17
NF8613_low_17
[»] chr2 (1 HSPs)
chr2 (1-184)||(18617526-18617709)
[»] scaffold0925 (1 HSPs)
scaffold0925 (5-96)||(124-217)
[»] chr7 (2 HSPs)
chr7 (5-96)||(19241465-19241558)
chr7 (116-184)||(19239987-19240055)
[»] chr6 (1 HSPs)
chr6 (5-96)||(22389284-22389377)
[»] chr5 (3 HSPs)
chr5 (5-96)||(21185370-21185463)
chr5 (5-96)||(21629427-21629520)
chr5 (6-39)||(9688092-9688125)
[»] chr4 (1 HSPs)
chr4 (5-96)||(10232317-10232410)
[»] scaffold0081 (1 HSPs)
scaffold0081 (7-96)||(1623-1714)
[»] scaffold0253 (2 HSPs)
scaffold0253 (7-96)||(7841-7932)
scaffold0253 (7-96)||(17266-17357)
[»] scaffold0116 (2 HSPs)
scaffold0116 (5-52)||(32405-32452)
scaffold0116 (8-52)||(41757-41801)
[»] scaffold0002 (1 HSPs)
scaffold0002 (5-47)||(396720-396761)


Alignment Details
Target: chr2 (Bit Score: 168; Significance: 3e-90; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 1 - 184
Target Start/End: Original strand, 18617526 - 18617709
Alignment:
Q  1 taaagggaattactactaataagttttaaagattttgcataagttatatgctaaattgtttatgtgagtaaataactttatctgtgagagttaattgagg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18617526 taaagggaattactactaataagttttaaagattttgcataagttatatgctaaattgtttatgtgagtaaataactttatctgtgagagttaattgagg 18617625  T
Q  101 aaccactgactgacgtttgggaaattaatctggcaacccaaacgttgtacttcaccaaacttgtttgtattactgtgggacttg 184  Q
    ||||||||| ||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| |||||||||    
T  18617626 aaccactgaatgacgtttgggaaattaatatggcatcccaaacgttgtacttcaccaaacttgtttgtattactatgggacttg 18617709  T

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Target: scaffold0925 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: scaffold0925
Description:

Target: scaffold0925; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 5 - 96
Target Start/End: Original strand, 124 - 217
Alignment:
Q  5 gggaattactactaataagttttaaagattttgcataagttatatgctaaattg--tttatgtgagtaaataactttatctgtgagagttaatt 96  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||| || ||  | ||||||||||||||||| ||  ||| ||||||||||    
T  124 gggaattactactaataagttttaaagattttgcataagttatgtgcttaagtgattatatgtgagtaaataactctacttgtaagagttaatt 217  T

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Target: chr7 (Bit Score: 51; Significance: 2e-20; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 5 - 96
Target Start/End: Complemental strand, 19241558 - 19241465
Alignment:
Q  5 gggaattactactaataagttttaaagattttgcataagttatatgctaaattg--tttatgtgagtaaataactttatctgtgagagttaatt 96  Q
    |||||||||||||||||| | |||||||||||||||||||||| |||| |||||  | ||||||| ||||||||| ||| ||||||||||||||    
T  19241558 gggaattactactaataaatgttaaagattttgcataagttatgtgcttaattgattatatgtgattaaataactctatttgtgagagttaatt 19241465  T

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Target: chr7; HSP #2
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 116 - 184
Target Start/End: Complemental strand, 19240055 - 19239987
Alignment:
Q  116 tttgggaaattaatctggcaacccaaacgttgtacttcaccaaacttgtttgtattactgtgggacttg 184  Q
    |||||||||| ||||||||||||||||| |||||||||||| |||||||||| |||||| || ||||||    
T  19240055 tttgggaaataaatctggcaacccaaacattgtacttcacctaacttgtttggattactatgagacttg 19239987  T

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Target: chr6 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 5 - 96
Target Start/End: Complemental strand, 22389377 - 22389284
Alignment:
Q  5 gggaattactactaataagttttaaagattttgcataagttatatgctaaattg--tttatgtgagtaaataactttatctgtgagagttaatt 96  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||| || ||  | ||||||||||||||||| ||  ||| ||||||||||    
T  22389377 gggaattactactaataagttttaaagattttgcataagttatgtgcttaagtgattatatgtgagtaaataactctacttgtaagagttaatt 22389284  T

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Target: chr5 (Bit Score: 51; Significance: 2e-20; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 5 - 96
Target Start/End: Complemental strand, 21185463 - 21185370
Alignment:
Q  5 gggaattactactaataagttttaaagattttgcataagttatatgctaaattg--tttatgtgagtaaataactttatctgtgagagttaatt 96  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||| || ||  | ||||||| ||||||||| ||  ||||||||||||||    
T  21185463 gggaattactactaataagttttaaagattttgcataagttatgtgcttaagtgattatatgtgactaaataactctacttgtgagagttaatt 21185370  T

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Target: chr5; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 5 - 96
Target Start/End: Complemental strand, 21629520 - 21629427
Alignment:
Q  5 gggaattactactaataagttttaaagattttgcataagttatatgctaaattg--tttatgtgagtaaataactttatctgtgagagttaatt 96  Q
    |||||||||||||||||| |||||||||||||||||||||||| |||| || ||  | ||||||||| ||||||| ||  ||||||||||||||    
T  21629520 gggaattactactaataaattttaaagattttgcataagttatgtgcttaagtgattatatgtgagtcaataactctacttgtgagagttaatt 21629427  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 6 - 39
Target Start/End: Complemental strand, 9688125 - 9688092
Alignment:
Q  6 ggaattactactaataagttttaaagattttgca 39  Q
    |||||||| |||||||||||||||||||||||||    
T  9688125 ggaattaccactaataagttttaaagattttgca 9688092  T

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Target: chr4 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 5 - 96
Target Start/End: Original strand, 10232317 - 10232410
Alignment:
Q  5 gggaattactactaataagttttaaagattttgcataagttatatgctaaattg--tttatgtgagtaaataactttatctgtgagagttaatt 96  Q
    |||||||||||||||||| |||||||||||||||||||||||| |||| || ||  | ||||||||||||||||| ||  ||||||||||||||    
T  10232317 gggaattactactaataaattttaaagattttgcataagttatgtgcttaagtgattatatgtgagtaaataactctacttgtgagagttaatt 10232410  T

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Target: scaffold0081 (Bit Score: 45; Significance: 8e-17; HSPs: 1)
Name: scaffold0081
Description:

Target: scaffold0081; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 7 - 96
Target Start/End: Complemental strand, 1714 - 1623
Alignment:
Q  7 gaattactactaataagttttaaagattttgcataagttatatgctaaattg--tttatgtgagtaaataactttatctgtgagagttaatt 96  Q
    ||||||||||||||| ||||||||||||||||||||||||| |||| || ||  | ||| ||||||||||||| ||  ||||||||||||||    
T  1714 gaattactactaatatgttttaaagattttgcataagttatgtgcttaagtgattatatctgagtaaataactctacttgtgagagttaatt 1623  T

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Target: scaffold0253 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: scaffold0253
Description:

Target: scaffold0253; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 7 - 96
Target Start/End: Complemental strand, 7932 - 7841
Alignment:
Q  7 gaattactactaataagttttaaagattttgcataagttatatgctaaattg--tttatgtgagtaaataactttatctgtgagagttaatt 96  Q
    ||||||||| ||||| |||||||||||||| |||||||||| |||| || ||  | ||||||||||||||||| ||  ||||||||||||||    
T  7932 gaattactaataatatgttttaaagatttttcataagttatgtgcttaagtgattatatgtgagtaaataactctacttgtgagagttaatt 7841  T

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Target: scaffold0253; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 7 - 96
Target Start/End: Complemental strand, 17357 - 17266
Alignment:
Q  7 gaattactactaataagttttaaagattttgcataagttatatgctaaattg--tttatgtgagtaaataactttatctgtgagagttaatt 96  Q
    ||||||||| ||||| |||||||||||||| |||||||||| |||| || ||  | ||||||||||||||||| ||  ||||||||||||||    
T  17357 gaattactaataatatgttttaaagatttttcataagttatgtgcttaagtgattatatgtgagtaaataactctacttgtgagagttaatt 17266  T

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Target: scaffold0116 (Bit Score: 40; Significance: 0.00000000000007; HSPs: 2)
Name: scaffold0116
Description:

Target: scaffold0116; HSP #1
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 5 - 52
Target Start/End: Original strand, 32405 - 32452
Alignment:
Q  5 gggaattactactaataagttttaaagattttgcataagttatatgct 52  Q
    ||||||||||||||||||||||||||||||||| ||||||||| ||||    
T  32405 gggaattactactaataagttttaaagattttgtataagttatgtgct 32452  T

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Target: scaffold0116; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 8 - 52
Target Start/End: Original strand, 41757 - 41801
Alignment:
Q  8 aattactactaataagttttaaagattttgcataagttatatgct 52  Q
    ||||||||||||||| |||||||||||||||||||||||| ||||    
T  41757 aattactactaataaattttaaagattttgcataagttatgtgct 41801  T

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Target: scaffold0002 (Bit Score: 35; Significance: 0.00000000007; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 5 - 47
Target Start/End: Complemental strand, 396761 - 396720
Alignment:
Q  5 gggaattactactaataagttttaaagattttgcataagttat 47  Q
    |||||||||||||||||||||||||||| ||||||||||||||    
T  396761 gggaattactactaataagttttaaaga-tttgcataagttat 396720  T

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