View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8613_low_4 (Length: 238)

Name: NF8613_low_4
Description: NF8613
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8613_low_4
NF8613_low_4
[»] chr4 (3 HSPs)
chr4 (148-223)||(6803630-6803707)
chr4 (74-129)||(43288639-43288694)
chr4 (4-44)||(43288715-43288755)
[»] chr6 (2 HSPs)
chr6 (4-115)||(31399440-31399553)
chr6 (68-129)||(24044136-24044197)
[»] chr2 (2 HSPs)
chr2 (68-129)||(10940635-10940696)
chr2 (68-129)||(10946504-10946565)
[»] chr1 (1 HSPs)
chr1 (68-129)||(49390117-49390178)
[»] chr7 (1 HSPs)
chr7 (68-129)||(13816614-13816675)


Alignment Details
Target: chr4 (Bit Score: 63; Significance: 2e-27; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 148 - 223
Target Start/End: Original strand, 6803630 - 6803707
Alignment:
Q  148 gaatgaattaaacctaaaagttcggtttcacgaaactc--taggtttacaagacttctttgtacttttagcttctaca 223  Q
    ||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||| ||||||||||||||    
T  6803630 gaatgaattaaacctaaaagttcggtttcacgaaactctataggtttacaagacttctttgtaattttagcttctaca 6803707  T

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Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 74 - 129
Target Start/End: Complemental strand, 43288694 - 43288639
Alignment:
Q  74 tgtgtacctgaccccttgtggatgatttcaagggaataatagtttaaaacttacaa 129  Q
    ||||||||||||||||||||||||||| |||||| | || ||||||||||||||||    
T  43288694 tgtgtacctgaccccttgtggatgattccaaggggagaaaagtttaaaacttacaa 43288639  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 44
Target Start/End: Complemental strand, 43288755 - 43288715
Alignment:
Q  4 caaacatattcaaaatactcttacaatttcaacacacaaaa 44  Q
    ||||||||||||| || |||| |||||||||||||||||||    
T  43288755 caaacatattcaacatgctctcacaatttcaacacacaaaa 43288715  T

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Target: chr6 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 4 - 115
Target Start/End: Original strand, 31399440 - 31399553
Alignment:
Q  4 caaacatattcaaaatactcttacaatttc-aacacacaaaaatcaacagttgt-atgtttaaaagttagagtgtgtacctgaccccttgtggatgattt 101  Q
    |||||||||| || ||||||| |||||||| ||||||  |||| ||||| |||| | |||||||||||||| |||||| ||||||  |||||||| ||||    
T  31399440 caaacatatttaatatactctcacaatttctaacacaacaaaaccaacatttgtgaggtttaaaagttagactgtgtatctgacctgttgtggattattt 31399539  T
Q  102 caagggaataatag 115  Q
    ||||||| ||||||    
T  31399540 caagggagtaatag 31399553  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 68 - 129
Target Start/End: Original strand, 24044136 - 24044197
Alignment:
Q  68 ttagagtgtgtacctgaccccttgtggatgatttcaagggaataatagtttaaaacttacaa 129  Q
    ||||| ||||||||||||||||||||||||||||||| || | |   |||||||||||||||    
T  24044136 ttagaatgtgtacctgaccccttgtggatgatttcaaagggagacgtgtttaaaacttacaa 24044197  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 68 - 129
Target Start/End: Original strand, 10940635 - 10940696
Alignment:
Q  68 ttagagtgtgtacctgaccccttgtggatgatttcaagggaataatagtttaaaacttacaa 129  Q
    ||||| ||||||||||||||||||||||||||||||| || | |   |||||||||||||||    
T  10940635 ttagaatgtgtacctgaccccttgtggatgatttcaaagggagacgtgtttaaaacttacaa 10940696  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 68 - 129
Target Start/End: Original strand, 10946504 - 10946565
Alignment:
Q  68 ttagagtgtgtacctgaccccttgtggatgatttcaagggaataatagtttaaaacttacaa 129  Q
    ||||| ||||||||||||||||||||||||||||||| || | |   |||||||||||||||    
T  10946504 ttagaatgtgtacctgaccccttgtggatgatttcaaagggagacgtgtttaaaacttacaa 10946565  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 68 - 129
Target Start/End: Original strand, 49390117 - 49390178
Alignment:
Q  68 ttagagtgtgtacctgaccccttgtggatgatttcaagggaataatagtttaaaacttacaa 129  Q
    ||||| ||||||||||||||||||||||||||||||| || | |   |||||||||||||||    
T  49390117 ttagaatgtgtacctgaccccttgtggatgatttcaaagggagacgtgtttaaaacttacaa 49390178  T

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Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 68 - 129
Target Start/End: Complemental strand, 13816675 - 13816614
Alignment:
Q  68 ttagagtgtgtacctgaccccttgtggatgatttcaagggaataatagtttaaaacttacaa 129  Q
    ||||| |||||||||||||| |||||||||||||||| || | |   |||||||||||||||    
T  13816675 ttagaatgtgtacctgacccattgtggatgatttcaaagggagacgtgtttaaaacttacaa 13816614  T

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