View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8613_low_5 (Length: 612)
Name: NF8613_low_5
Description: NF8613
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8613_low_5 |
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Alignment Details
Target: chr6 (Bit Score: 164; Significance: 2e-87; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 142 - 395
Target Start/End: Original strand, 31901017 - 31901274
Alignment:
| Q |
142 |
ctaacagaacatgcatcatcttaaattcaactaagatttgccatataggatgcattagtgttcatgatttatccttattcttctctactaataaaatcaa |
241 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||| ||||||||||| | |||||| |
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| T |
31901017 |
ctaacagaacatgcatcatcttaaattcaactaagatttgccatataggatgcattagtgttgatgatttatcctgattattctctactaacataatcaa |
31901116 |
T |
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| Q |
242 |
attgtgtatgttattagtatttacat-gaaaacatttaatggccataaagc---nnnnnnnnaacaaccaaaagttattgagataacacaaaactggctg |
337 |
Q |
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| T |
31901117 |
actatgtatgttattagtatttacatagaaaacatttaatggccacaaagctttttttttttaacaaccaaaagttattgagataacacagatctggctg |
31901216 |
T |
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| Q |
338 |
tcaaaacaaaacagcagcaccacatcataatatttgtgttcaagacaacaaaataaca |
395 |
Q |
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|||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
31901217 |
tcaaaacataacagcagcaccacatcataatagttgtgttcaagacaacaaaataaca |
31901274 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 433 - 594
Target Start/End: Original strand, 31925488 - 31925647
Alignment:
| Q |
433 |
ataataacttcaaatgataaccacttaagtaaatggttgtgcactccaattatgaaccaaattagaatccaaaaacatagtctcaactaacataaaatca |
532 |
Q |
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|||| ||||||||||||||||||||||||||| ||| |||||| |||| |||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
31925488 |
ataacaacttcaaatgataaccacttaagtaa-tggctgtgca-tccatttatgaaccaaattagaatccaaaaacatagtctcagctaacataaaatca |
31925585 |
T |
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| Q |
533 |
agacaataccagaaacaaaactgcagcaacaccaactggcacatacagaacaataaaggaga |
594 |
Q |
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| T |
31925586 |
aggcaataccagaaacaaaactgcagcaacaccaactggcacacacaagacaataaaggaga |
31925647 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 64; Significance: 1e-27; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 29 - 116
Target Start/End: Original strand, 19919711 - 19919798
Alignment:
| Q |
29 |
attcaacacataaaaaacatacaattttaagtgtaaatattaaaattgagggggttcacgtgcacgccctcagcgcaacgttgctccg |
116 |
Q |
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| T |
19919711 |
attcaacgcataaaaaacatacaattttaagtgtaaatattaaaattgaaggggttcacgtgcacaccctcaatgcaacgtggctccg |
19919798 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 57; Significance: 2e-23; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 127 - 290
Target Start/End: Original strand, 8398862 - 8399026
Alignment:
| Q |
127 |
taacataagttataactaacagaacatgcatcatcttaaattcaactaagatttgccatataggatgcattagtgttcatgatttatccttattcttctc |
226 |
Q |
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||||||||||||||| || || |||||| ||||||||||||||||||||||| | || || |||||| ||||| |||||||| ||||||||||||| |
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| T |
8398862 |
taacataagttataaggaagaggccatgcaacatcttaaattcaactaagattttcaatggagaatgcatctgtgttaatgatttacccttattcttctc |
8398961 |
T |
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| Q |
227 |
tactaataaaatcaaattgtgtatgttattagtatttacat-gaaaacatttaatggccataaag |
290 |
Q |
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| T |
8398962 |
taccaaaagaatcaaatgaagcatgttattagtatttgcatggaaaacaattaatggccacaaag |
8399026 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 18 - 100
Target Start/End: Complemental strand, 29221132 - 29221050
Alignment:
| Q |
18 |
atattgagggaattcaacacataaaaaacatacaa-ttttaagtgtaaatattaaaattgagggggttcacgtgcacgccctca |
100 |
Q |
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| T |
29221132 |
atattgaggggattcaacacataaaacacataaaaattttaagtgtaaatattaaaattga-ggggttcacgtgcacaccctca |
29221050 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 47; Significance: 2e-17; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 18 - 100
Target Start/End: Original strand, 37036335 - 37036415
Alignment:
| Q |
18 |
atattgagggaattcaacacataaaaaacatacaattttaagtgtaaatattaaaattgagggggttcacgtgcacgccctca |
100 |
Q |
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| T |
37036335 |
atattaaggggattcaacacataaaaa-catataattttaagtgtaaatattaaaattga-ggggttcacatgcacaccctca |
37036415 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 465 - 530
Target Start/End: Complemental strand, 24511514 - 24511449
Alignment:
| Q |
465 |
atggttgtgcactccaattatgaaccaaattagaatccaaaaacatagtctcaactaacataaaat |
530 |
Q |
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| T |
24511514 |
atggatgtgcatttcaattacgaacaaaattacaatccaaaaatatagtctcaactaacatgaaat |
24511449 |
T |
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