View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8613_low_6 (Length: 511)
Name: NF8613_low_6
Description: NF8613
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8613_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 279; Significance: 1e-156; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 1 - 320
Target Start/End: Original strand, 28102624 - 28102945
Alignment:
| Q |
1 |
acgattattaatcacttgagttcaacaatctgattatttaattaagtatatagctatataagcacatgatgtaacatgtttcaactaaaccctcatttca |
100 |
Q |
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| T |
28102624 |
acgattattaatcacttgagttcaacaatctgattatttaactaagtatatagctatataagcacatgaggtaacatgtttcaactaaaccctcatttca |
28102723 |
T |
|
| Q |
101 |
aatctgtaatgtgtttgccacttcagttagccacaaaaacaaagtaaaacattccttggatgtatcttctatt--aaacacttcaattccttccccaaac |
198 |
Q |
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| T |
28102724 |
aatgtgtaatgtgtttgccacttcagctagccacaaaaacaaagtaaaacattccttggatgtatcttctattaaaaacacttcaattccttccccaaac |
28102823 |
T |
|
| Q |
199 |
catttttgataaaggtgtttatttgatcaatttagttagcgaaatgctaataaatgttttaaaaacacttgttaagaaacttaaaaaagaaagtttatct |
298 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||| |
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| T |
28102824 |
catttttgataaaggtgtttattttgtcaatttagttagcgaaatgctaataaatgttctaaaaacacttgttaagaaacttaaaaaagaaaatttatct |
28102923 |
T |
|
| Q |
299 |
tattaatgatgcattcaacacc |
320 |
Q |
| |
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|||||||||||||||||||||| |
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| T |
28102924 |
tattaatgatgcattcaacacc |
28102945 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 388 - 497
Target Start/End: Original strand, 28103013 - 28103121
Alignment:
| Q |
388 |
ctagtgtcataagaacacttcttagtgtaactcattaagttaatacattgatttctacatctatgactgcgccacatcaccaataaaaaatatgtcatct |
487 |
Q |
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| T |
28103013 |
ctagtgtcatgacaacacttcttggtgcaactcattaagttaatagattgatttctacatctatgactgcgccacatcaccaat-aaaaatatgtcatct |
28103111 |
T |
|
| Q |
488 |
cttcttcccc |
497 |
Q |
| |
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|||||||||| |
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| T |
28103112 |
cttcttcccc |
28103121 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 264 - 320
Target Start/End: Original strand, 9596294 - 9596350
Alignment:
| Q |
264 |
cacttgttaagaaacttaaaaaagaaagtttatcttattaatgatgcattcaacacc |
320 |
Q |
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||||||||||||| ||||||||||||||||||||||| |||||| |||||||||| |
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| T |
9596294 |
cacttgttaagaagcttaaaaaagaaagtttatcttagagatgatgtattcaacacc |
9596350 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 248 - 289
Target Start/End: Complemental strand, 29110866 - 29110825
Alignment:
| Q |
248 |
ataaatgttttaaaaacacttgttaagaaacttaaaaaagaa |
289 |
Q |
| |
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| T |
29110866 |
ataaatgctttaaaaacacttgttaagaaatttaaaaaagaa |
29110825 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 264 - 320
Target Start/End: Original strand, 24093783 - 24093839
Alignment:
| Q |
264 |
cacttgttaagaaacttaaaaaagaaagtttatcttattaatgatgcattcaacacc |
320 |
Q |
| |
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||||||||||||| ||||||| |||||||||||||| ||||||| |||||||||| |
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|
| T |
24093783 |
cacttgttaagaagcttaaaagagaaagtttatcttgggaatgatgtattcaacacc |
24093839 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 267 - 300
Target Start/End: Complemental strand, 6963715 - 6963682
Alignment:
| Q |
267 |
ttgttaagaaacttaaaaaagaaagtttatctta |
300 |
Q |
| |
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|||||||||||||||||| ||||||||||||||| |
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| T |
6963715 |
ttgttaagaaacttaaaagagaaagtttatctta |
6963682 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 240 - 300
Target Start/End: Original strand, 12928972 - 12929032
Alignment:
| Q |
240 |
aaatgctaataaatgttttaaaaacacttgttaagaaacttaaaaaagaaagtttatctta |
300 |
Q |
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|||||||||||| |||| | ||||||||||||||||| || ||| | ||||||||||||| |
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| T |
12928972 |
aaatgctaataagtgttcttaaaacacttgttaagaagctagaaagataaagtttatctta |
12929032 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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