View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8613_low_7 (Length: 421)
Name: NF8613_low_7
Description: NF8613
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8613_low_7 |
 | |
|
| [»] scaffold1393 (1 HSPs) |
| | |
|
| [»] scaffold0005 (1 HSPs) |
| | |
|
| [»] scaffold0002 (1 HSPs) |
| | |
|
| [»] scaffold0029 (1 HSPs) |
| | |
|
Alignment Details
Target: chr7 (Bit Score: 352; Significance: 0; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 7 - 410
Target Start/End: Original strand, 4806315 - 4806718
Alignment:
| Q |
7 |
catcatcaattctttcaaccattgacaaacagattttgcttcatcagcaataagactattaatagcctttggttttagatattttccattttgaagaagt |
106 |
Q |
| |
|
|||| |||| ||||||||||||||||||||||||||||||||||||||| ||||||||| || |||||| |||||||||||||||||||||||||||||| |
|
|
| T |
4806315 |
catcctcaactctttcaaccattgacaaacagattttgcttcatcagcagtaagactataaacagccttgggttttagatattttccattttgaagaagt |
4806414 |
T |
|
| Q |
107 |
tgtagctccatttctggtctcttacaatgcaatggcaagtccattctagccttctcattatcttttgatttaccagagacattcatcaccgtgcgaatta |
206 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||| |||||| |
|
|
| T |
4806415 |
tgtagctccatttctggtctcttacaatgcaatggcaagtccattctagccttctcattatcttttgttttaccagagacattcatcactgtgtgaatta |
4806514 |
T |
|
| Q |
207 |
tattgtcacaaaagttattttcaatgtgcataacatcaagattatgtctcaataaattatctttccagtaagggagatcccagaagatacttcttttggt |
306 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4806515 |
tattgtcacaaaagttcttttcaatgtgcataacatcaagattatgtctcagtaaattatctttccagtaagggagatcccagaagatacttcttttggt |
4806614 |
T |
|
| Q |
307 |
ccaatggtactcgttaccgtattgtgggtgtctgactcttttgccaacatctgtgaatttcaaaagtcctggttcattgactctacggtatacttcctct |
406 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
4806615 |
ccaatggtgctcgttaccgtattgtgggtgtctgactcttttgccaacatctgtgaatttcaaaagtcctagttcattgactctacggtatacttcctct |
4806714 |
T |
|
| Q |
407 |
gatg |
410 |
Q |
| |
|
|||| |
|
|
| T |
4806715 |
gatg |
4806718 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 7 - 410
Target Start/End: Original strand, 12764932 - 12765335
Alignment:
| Q |
7 |
catcatcaattctttcaaccattgacaaacagattttgcttcatcagcaataagactattaatagcctttggttttagatattttccattttgaagaagt |
106 |
Q |
| |
|
|||| |||| ||||||||||||||||||||||||||||||||||||||| ||||||||| || |||||| |||||||||||||||||||||||||||||| |
|
|
| T |
12764932 |
catcctcaactctttcaaccattgacaaacagattttgcttcatcagcagtaagactataaacagccttgggttttagatattttccattttgaagaagt |
12765031 |
T |
|
| Q |
107 |
tgtagctccatttctggtctcttacaatgcaatggcaagtccattctagccttctcattatcttttgatttaccagagacattcatcaccgtgcgaatta |
206 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||| |||||| |
|
|
| T |
12765032 |
tgtagctccatttctggtctcttacaatgcaatggcaagtccattctagccttctcattatcttttgttttaccagagacattcatcactgtgtgaatta |
12765131 |
T |
|
| Q |
207 |
tattgtcacaaaagttattttcaatgtgcataacatcaagattatgtctcaataaattatctttccagtaagggagatcccagaagatacttcttttggt |
306 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12765132 |
tattgtcacaaaagttcttttcaatgtgcataacatcaagattatgtctcagtaaattatctttccagtaagggagatcccagaagatacttcttttggt |
12765231 |
T |
|
| Q |
307 |
ccaatggtactcgttaccgtattgtgggtgtctgactcttttgccaacatctgtgaatttcaaaagtcctggttcattgactctacggtatacttcctct |
406 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
12765232 |
ccaatggtgctcgttaccgtattgtgggtgtctgactcttttgccaacatctgtgaatttcaaaagtcctagttcattgactctacggtatacttcctct |
12765331 |
T |
|
| Q |
407 |
gatg |
410 |
Q |
| |
|
|||| |
|
|
| T |
12765332 |
gatg |
12765335 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 32 - 364
Target Start/End: Complemental strand, 13566859 - 13566527
Alignment:
| Q |
32 |
caaacagattttgcttcatcagcaataagactattaatagcctttggttttagatattttccattttgaagaagttgtagctccatttctggtctcttac |
131 |
Q |
| |
|
|||||||||||||||||||||| | |||||| || ||| || |||||| | ||||||||||| ||||| |||||| |||||||||||||| |||| |
|
|
| T |
13566859 |
caaacagattttgcttcatcagaggttagactaaaaacagctttgggttttcaaaattttccatttggaagagattgtagttccatttctggtcttttac |
13566760 |
T |
|
| Q |
132 |
aatgcaatggcaagtccattctagccttctcattatcttttgatttaccagagacattcatcaccgtgcgaattatattgtcacaaaagttattttcaat |
231 |
Q |
| |
|
||| | | ||| ||| | ||||||||||||||||||||| |||||| |||||||||||||| ||| ||| |||||||||| ||| || |||||||| |
|
|
| T |
13566759 |
aataaaccgacaaacccagtttagccttctcattatcttttgttttaccggagacattcatcactgtgtgaagtatattgtcaaaaatattcttttcaat |
13566660 |
T |
|
| Q |
232 |
gtgcataacatcaagattatgtctcaataaattatctttccagtaagggagatcccagaagatacttcttttggtccaatggtactcgttaccgtattgt |
331 |
Q |
| |
|
|||||||||||||||||||||||| | |||||| |||||||||||||| || ||||| || |||||||||||| |||||| || || | || |||| |
|
|
| T |
13566659 |
gtgcataacatcaagattatgtcttagtaaattgtctttccagtaaggaaggtcccaaaaaatacttcttttgatccaattgtgcttttccccatattca |
13566560 |
T |
|
| Q |
332 |
gggtgtctgactcttttgccaacatctgtgaat |
364 |
Q |
| |
|
||| ||||| ||||||||||||||||| |||| |
|
|
| T |
13566559 |
tggtatctgattcttttgccaacatctgggaat |
13566527 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 89 - 195
Target Start/End: Complemental strand, 2766033 - 2765927
Alignment:
| Q |
89 |
tttccattttgaagaagttgtagctccatttctggtctcttacaatgcaatggcaagtccattctagccttctcattatcttttgatttaccagagacat |
188 |
Q |
| |
|
||||||||| |||||||||||||| |||||| |||||||| ||| ||||| || | |||||||||||||||||||||||||| |||||| |||||| |
|
|
| T |
2766033 |
tttccatttgaaagaagttgtagcttaatttctagtctcttataatataatggtaaattcattctagccttctcattatcttttgttttaccgcagacat |
2765934 |
T |
|
| Q |
189 |
tcatcac |
195 |
Q |
| |
|
||||||| |
|
|
| T |
2765933 |
tcatcac |
2765927 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 150 - 314
Target Start/End: Original strand, 7302262 - 7302426
Alignment:
| Q |
150 |
ttctagccttctcattatcttttgatttaccagagacattcatcaccgtgcgaattatattgtcacaaaagttattttcaatgtgcataacatcaagatt |
249 |
Q |
| |
|
|||||||||||||||| ||||||| ||| || ||||| |||||| ||| || ||| |||||| | | || || ||||||||||| ||||||||||| |
|
|
| T |
7302262 |
ttctagccttctcattgtcttttgttttgcctttgacatccatcactgtgttaaatatgttgtcaaagacattcttctcaatgtgcattacatcaagatt |
7302361 |
T |
|
| Q |
250 |
atgtctcaataaattatctttccagtaagggagatcccagaagatacttcttttggtccaatggt |
314 |
Q |
| |
|
|||||| | || ||||||||||| || ||||| ||||| || ||||| ||||| ||||| |||| |
|
|
| T |
7302362 |
atgtctgagcaagttatctttccaatatgggaggtcccaaaatatactccttttagtccagtggt |
7302426 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 150 - 314
Target Start/End: Original strand, 18338145 - 18338309
Alignment:
| Q |
150 |
ttctagccttctcattatcttttgatttaccagagacattcatcaccgtgcgaattatattgtcacaaaagttattttcaatgtgcataacatcaagatt |
249 |
Q |
| |
|
|||||||||||||||| ||||||| ||| || ||||| |||||| ||| || ||| |||||| | | || || ||||||||||| ||||||||||| |
|
|
| T |
18338145 |
ttctagccttctcattgtcttttgttttgcctttgacatccatcactgtgttaaatatgttgtcaaagacattcttctcaatgtgcattacatcaagatt |
18338244 |
T |
|
| Q |
250 |
atgtctcaataaattatctttccagtaagggagatcccagaagatacttcttttggtccaatggt |
314 |
Q |
| |
|
|||||| | || ||||||||||| || ||||| ||||| || ||||| ||||| ||||| |||| |
|
|
| T |
18338245 |
atgtctgagcaagttatctttccaatatgggaggtcccaaaatatactccttttagtccagtggt |
18338309 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 352; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 7 - 410
Target Start/End: Original strand, 7407147 - 7407550
Alignment:
| Q |
7 |
catcatcaattctttcaaccattgacaaacagattttgcttcatcagcaataagactattaatagcctttggttttagatattttccattttgaagaagt |
106 |
Q |
| |
|
|||| |||| ||||||||||||||||||||||||||||||||||||||| ||||||||| || |||||| |||||||||||||||||||||||||||||| |
|
|
| T |
7407147 |
catcctcaactctttcaaccattgacaaacagattttgcttcatcagcagtaagactataaacagccttgggttttagatattttccattttgaagaagt |
7407246 |
T |
|
| Q |
107 |
tgtagctccatttctggtctcttacaatgcaatggcaagtccattctagccttctcattatcttttgatttaccagagacattcatcaccgtgcgaatta |
206 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||| |||||| |
|
|
| T |
7407247 |
tgtagctccatttctggtctcttacaatgcaatggcaagtccattctagccttctcattatcttttgttttaccagagacattcatcactgtgtgaatta |
7407346 |
T |
|
| Q |
207 |
tattgtcacaaaagttattttcaatgtgcataacatcaagattatgtctcaataaattatctttccagtaagggagatcccagaagatacttcttttggt |
306 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7407347 |
tattgtcacaaaagttcttttcaatgtgcataacatcaagattatgtctcagtaaattatctttccagtaagggagatcccagaagatacttcttttggt |
7407446 |
T |
|
| Q |
307 |
ccaatggtactcgttaccgtattgtgggtgtctgactcttttgccaacatctgtgaatttcaaaagtcctggttcattgactctacggtatacttcctct |
406 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
7407447 |
ccaatggtgctcgttaccgtattgtgggtgtctgactcttttgccaacatctgtgaatttcaaaagtcctagttcattgactctacggtatacttcctct |
7407546 |
T |
|
| Q |
407 |
gatg |
410 |
Q |
| |
|
|||| |
|
|
| T |
7407547 |
gatg |
7407550 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 7 - 311
Target Start/End: Complemental strand, 14899461 - 14899157
Alignment:
| Q |
7 |
catcatcaattctttcaaccattgacaaacagattttgcttcatcagcaataagactattaatagcctttggttttagatattttccattttgaagaagt |
106 |
Q |
| |
|
|||| |||||||||| ||||| |||||||||||||| |||||| || | | |||| || |||||| ||||| ||||||||||||||| |||||||| |
|
|
| T |
14899461 |
catcctcaattcttttaaccactgacaaacagatttcgcttcagcactggttaagctataaacagccttgggtttcagatattttccatttggaagaagt |
14899362 |
T |
|
| Q |
107 |
tgtagctccatttctggtctcttacaatgcaatggcaagtccattctagccttctcattatcttttgatttaccagagacattcatcaccgtgcgaatta |
206 |
Q |
| |
|
| || ||| || |||||||||||||||| | |||||| ||||||||||||||||| |||||||||| ||||||||||||||||||||| ||| || || |
|
|
| T |
14899361 |
tttaactcaatatctggtctcttacaatactctggcaaatccattctagccttctcgttatcttttgttttaccagagacattcatcactgtgttaacta |
14899262 |
T |
|
| Q |
207 |
tattgtcacaaaagttattttcaatgtgcataacatcaagattatgtctcaataaattatctttccagtaagggagatcccagaagatacttcttttggt |
306 |
Q |
| |
|
||||||||||||| || |||||||||||||||||||| ||||||||||| | |||||| ||||||||||||||||||||||| || |||||||||||||| |
|
|
| T |
14899261 |
tattgtcacaaaaattcttttcaatgtgcataacatccagattatgtcttagtaaattgtctttccagtaagggagatcccaaaaaatacttcttttggt |
14899162 |
T |
|
| Q |
307 |
ccaat |
311 |
Q |
| |
|
||||| |
|
|
| T |
14899161 |
ccaat |
14899157 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 352; Significance: 0; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 5 - 416
Target Start/End: Complemental strand, 22330151 - 22329740
Alignment:
| Q |
5 |
gacatcatcaattctttcaaccattgacaaacagattttgcttcatcagcaataagactattaatagcctttggttttagatattttccattttgaagaa |
104 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
22330151 |
gacatcctcaattctttcaaccattgacaaacagattttgcttcatcagcagtaagactataaatagccttgggttttagatattttccattttgaagaa |
22330052 |
T |
|
| Q |
105 |
gttgtagctccatttctggtctcttacaatgcaatggcaagtccattctagccttctcattatcttttgatttaccagagacattcatcaccgtgcgaat |
204 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
22330051 |
gttgtagctccatttctggtctcttacattgcaatgacaagtccattctagccttctcattatcttttgatttaccagagacattcatcaccgtgtgaat |
22329952 |
T |
|
| Q |
205 |
tatattgtcacaaaagttattttcaatgtgcataacatcaagattatgtctcaataaattatctttccagtaagggagatcccagaagatacttcttttg |
304 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||| |
|
|
| T |
22329951 |
tatattgtcacaaaagttcttttcaatgtgcataacatcaagattatgtctcaataaattatctttctagtaagggagatcccagaaaatacttcttttg |
22329852 |
T |
|
| Q |
305 |
gtccaatggtactcgttaccgtattgtgggtgtctgactcttttgccaacatctgtgaatttcaaaagtcctggttcattgactctacggtatacttcct |
404 |
Q |
| |
|
|||||||||| ||| |||||||||||| |||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
22329851 |
gtccaatggtgctcattaccgtattgtaggtgtctgactcttttgccaacatttgtgaatttcaaaagtcctagttcattgactctacggtatacttcct |
22329752 |
T |
|
| Q |
405 |
ctgatgatgtcc |
416 |
Q |
| |
|
|||||||||||| |
|
|
| T |
22329751 |
ctgatgatgtcc |
22329740 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 230 - 416
Target Start/End: Original strand, 54953877 - 54954063
Alignment:
| Q |
230 |
atgtgcataacatcaagattatgtctcaataaattatctttccagtaagggagatcccagaagatacttcttttggtccaatggtactcgttaccgtatt |
329 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
54953877 |
atgtgcataacatcaagattatgtctcaataaattatctttccagtaagggagatcccagaagatacttcttttggtccaatggtgctcgttaccgtatt |
54953976 |
T |
|
| Q |
330 |
gtgggtgtctgactcttttgccaacatctgtgaatttcaaaagtcctggttcattgactctacggtatacttcctctgatgatgtcc |
416 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
54953977 |
gtgggtgtctgactcttttgccaacatctgtgaacttcaaaagtcctagttcattgactctacggtatacttcctctgataatgtcc |
54954063 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 7 - 311
Target Start/End: Complemental strand, 14808590 - 14808286
Alignment:
| Q |
7 |
catcatcaattctttcaaccattgacaaacagattttgcttcatcagcaataagactattaatagcctttggttttagatattttccattttgaagaagt |
106 |
Q |
| |
|
|||| |||||||||| ||||| |||||||||||||| |||||| || | | ||||| || |||||| ||||| | ||||||||||||| |||||||| |
|
|
| T |
14808590 |
catcctcaattcttttaaccactgacaaacagatttcgcttcagcactggttaaactataaacagccttgggtttcaaatattttccatttggaagaagt |
14808491 |
T |
|
| Q |
107 |
tgtagctccatttctggtctcttacaatgcaatggcaagtccattctagccttctcattatcttttgatttaccagagacattcatcaccgtgcgaatta |
206 |
Q |
| |
|
| || |||||| |||||||||||||||| | |||||| ||||||||||||||||| |||||||||| ||||| ||||||||||||||| ||| || || |
|
|
| T |
14808490 |
tttaactccatatctggtctcttacaatactctggcaaatccattctagccttctcgttatcttttgttttactagagacattcatcactgtgttaacta |
14808391 |
T |
|
| Q |
207 |
tattgtcacaaaagttattttcaatgtgcataacatcaagattatgtctcaataaattatctttccagtaagggagatcccagaagatacttcttttggt |
306 |
Q |
| |
|
||||||||||||| || |||||||||||||||||||| ||||||||||| | |||||| ||||||||||||||||||||||| || |||||||||||||| |
|
|
| T |
14808390 |
tattgtcacaaaaattcttttcaatgtgcataacatccagattatgtcttagtaaattgtctttccagtaagggagatcccaaaaaatacttcttttggt |
14808291 |
T |
|
| Q |
307 |
ccaat |
311 |
Q |
| |
|
||||| |
|
|
| T |
14808290 |
ccaat |
14808286 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 150 - 314
Target Start/End: Original strand, 38969559 - 38969723
Alignment:
| Q |
150 |
ttctagccttctcattatcttttgatttaccagagacattcatcaccgtgcgaattatattgtcacaaaagttattttcaatgtgcataacatcaagatt |
249 |
Q |
| |
|
|||||||||||||||| ||||||| ||| || ||||| |||||| ||| || ||| |||||| | | || || ||||||||||| ||||||||||| |
|
|
| T |
38969559 |
ttctagccttctcattgtcttttgttttgcctttgacatccatcactgtgttaaatatgttgtcaaagacattcttctcaatgtgcattacatcaagatt |
38969658 |
T |
|
| Q |
250 |
atgtctcaataaattatctttccagtaagggagatcccagaagatacttcttttggtccaatggt |
314 |
Q |
| |
|
|||||| | || ||||||||||| || ||||| ||||| || ||||| ||||| ||||| |||| |
|
|
| T |
38969659 |
atgtctgagcaagttatctttccaatatgggaggtcccaaaatatactccttttagtccagtggt |
38969723 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 209 - 297
Target Start/End: Original strand, 10799907 - 10799995
Alignment:
| Q |
209 |
ttgtcacaaaagttattttcaatgtgcataacatcaagattatgtctcaataaattatctttccagtaagggagatcccagaagatact |
297 |
Q |
| |
|
|||||| |||| || || ||||||||||| ||||||||||||||||| | || ||||||||||| || ||||| ||||| || ||||| |
|
|
| T |
10799907 |
ttgtcaaaaaaattcttctcaatgtgcattacatcaagattatgtctgagcaagttatctttccaatatgggaggtcccaaaatatact |
10799995 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 205 - 311
Target Start/End: Original strand, 1935132 - 1935238
Alignment:
| Q |
205 |
tatattgtcacaaaagttattttcaatgtgcataacatcaagattatgtctcaataaattatctttccagtaagggagatcccagaagatacttcttttg |
304 |
Q |
| |
|
|||||||||| |||| || || ||||| ||||| ||||| ||||| || || |||| |||||||||||| || | | |||||| || ||||||||||| |
|
|
| T |
1935132 |
tatattgtcaaaaaaattcttctcaatatgcatgacatcgagattgtgccttaatagattatctttccaatatagcaaatcccaaaaaatacttcttttt |
1935231 |
T |
|
| Q |
305 |
gtccaat |
311 |
Q |
| |
|
||||||| |
|
|
| T |
1935232 |
gtccaat |
1935238 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1393 (Bit Score: 340; Significance: 0; HSPs: 1)
Name: scaffold1393
Description:
Target: scaffold1393; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 33 - 416
Target Start/End: Complemental strand, 534 - 151
Alignment:
| Q |
33 |
aaacagattttgcttcatcagcaataagactattaatagcctttggttttagatattttccattttgaagaagttgtagctccatttctggtctcttaca |
132 |
Q |
| |
|
||||||||||||||||||||||| ||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
534 |
aaacagattttgcttcatcagcagtaagactataaatagccttgggttttagatattttccattttgaagaagttgtagctccatttctggtctcttaca |
435 |
T |
|
| Q |
133 |
atgcaatggcaagtccattctagccttctcattatcttttgatttaccagagacattcatcaccgtgcgaattatattgtcacaaaagttattttcaatg |
232 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||| |||||||||||||||||||||| ||||||||| |
|
|
| T |
434 |
atgcaatggcaagtccattctagccttctcattatcttttgttttaccagagacattcatcactgtgtgaattatattgtcacaaaagttcttttcaatg |
335 |
T |
|
| Q |
233 |
tgcataacatcaagattatgtctcaataaattatctttccagtaagggagatcccagaagatacttcttttggtccaatggtactcgttaccgtattgtg |
332 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
334 |
tgcataacatcaagattatgtctcagtaaattatctttccagtaagggagatcccagaagatacttcttttggtccaatggtgctcgttaccgtattgtg |
235 |
T |
|
| Q |
333 |
ggtgtctgactcttttgccaacatctgtgaatttcaaaagtcctggttcattgactctacggtatacttcctctgatgatgtcc |
416 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
234 |
ggtgtctgactcttttgccaacatctgtgaatttcaaaagtcctagttcattgactctacggtatacttcctctgatgttgtcc |
151 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 324; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 7 - 410
Target Start/End: Complemental strand, 23010837 - 23010434
Alignment:
| Q |
7 |
catcatcaattctttcaaccattgacaaacagattttgcttcatcagcaataagactattaatagcctttggttttagatattttccattttgaagaagt |
106 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||| || ||||||||| || |||||| | |||||||||||||||||||||||||||| |
|
|
| T |
23010837 |
catcctcaattctttcaaccattgacaaacagattttgcttcatcatcagtaagactataaacagccttggattttagatattttccattttgaagaagt |
23010738 |
T |
|
| Q |
107 |
tgtagctccatttctggtctcttacaatgcaatggcaagtccattctagccttctcattatcttttgatttaccagagacattcatcaccgtgcgaatta |
206 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||| || |||||| |
|
|
| T |
23010737 |
tgtagctccatttatggtctcttacaatgcaatggcaagtccattctagccttctcattatcttttgttttagcagagacattcatcactatgtgaatta |
23010638 |
T |
|
| Q |
207 |
tattgtcacaaaagttattttcaatgtgcataacatcaagattatgtctcaataaattatctttccagtaagggagatcccagaagatacttcttttggt |
306 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
23010637 |
tattgtcacaaaagttcttttcaatgtgcataacatcaaaattatgtctcagtaaattatctttccagtaagggagatcccagaagatactccttttggt |
23010538 |
T |
|
| Q |
307 |
ccaatggtactcgttaccgtattgtgggtgtctgactcttttgccaacatctgtgaatttcaaaagtcctggttcattgactctacggtatacttcctct |
406 |
Q |
| |
|
|||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
23010537 |
ccaatggtgctcgttaccgtattttgggtgtctgactcttttgccaacatctgtgaatttcaaaagtcctagttcattgactctacggtatacttcctct |
23010438 |
T |
|
| Q |
407 |
gatg |
410 |
Q |
| |
|
|||| |
|
|
| T |
23010437 |
gatg |
23010434 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 31 - 311
Target Start/End: Complemental strand, 20149399 - 20149119
Alignment:
| Q |
31 |
acaaacagattttgcttcatcagcaataagactattaatagcctttggttttagatattttccattttgaagaagttgtagctccatttctggtctctta |
130 |
Q |
| |
|
||||||||||||||||||||||| | |||||| ||||||||| |||||| || ||||||||||| ||||| | ||||| ||||||||| |||||||| |
|
|
| T |
20149399 |
acaaacagattttgcttcatcagaggttagactaaaaatagccttgggttttcgaaattttccatttggaagaggctgtagttccatttctagtctctta |
20149300 |
T |
|
| Q |
131 |
caatgcaatggcaagtccattctagccttctcattatcttttgatttaccagagacattcatcaccgtgcgaattatattgtcacaaaagttattttcaa |
230 |
Q |
| |
|
|||| || | ||| |||| ||||||||||||||||||||||| |||||| |||||||||||||| ||| ||| |||||||||| |||| || ||||||| |
|
|
| T |
20149299 |
caatacaccgacaaatccagtctagccttctcattatcttttgttttacctgagacattcatcactgtgtgaagtatattgtcaaaaaaattcttttcaa |
20149200 |
T |
|
| Q |
231 |
tgtgcataacatcaagattatgtctcaataaattatctttccagtaagggagatcccagaagatacttcttttggtccaat |
311 |
Q |
| |
|
||||||||||||||||||||||||||| |||||| |||||||| ||||| || ||||| || |||||||||||| |||||| |
|
|
| T |
20149199 |
tgtgcataacatcaagattatgtctcagtaaattgtctttccaataaggaaggtcccaaaaaatacttcttttgatccaat |
20149119 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 150 - 314
Target Start/End: Original strand, 33905201 - 33905365
Alignment:
| Q |
150 |
ttctagccttctcattatcttttgatttaccagagacattcatcaccgtgcgaattatattgtcacaaaagttattttcaatgtgcataacatcaagatt |
249 |
Q |
| |
|
|||||||||||||||| ||||||| ||| || ||||| |||||| ||| || ||| |||||| | | || || ||||||||||| ||||||||||| |
|
|
| T |
33905201 |
ttctagccttctcattgtcttttgttttgcctttgacatccatcactgtgttaaatatgttgtcaaagacattcttctcaatgtgcattacatcaagatt |
33905300 |
T |
|
| Q |
250 |
atgtctcaataaattatctttccagtaagggagatcccagaagatacttcttttggtccaatggt |
314 |
Q |
| |
|
|||||| | || ||||||||||| || ||||| ||||| || ||||| ||||| ||||| |||| |
|
|
| T |
33905301 |
atgtctgagcaagttatctttccaatatgggaggtcccaaaatatactccttttagtccagtggt |
33905365 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 171; Significance: 1e-91; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 82 - 264
Target Start/End: Original strand, 28498057 - 28498239
Alignment:
| Q |
82 |
tagatattttccattttgaagaagttgtagctccatttctggtctcttacaatgcaatggcaagtccattctagccttctcattatcttttgatttacca |
181 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28498057 |
tagatattttccattttgaagaaattgtagctccatttctggtctcttacaatgcaatggcaagtccattctagccttctcattatcttttgatttacca |
28498156 |
T |
|
| Q |
182 |
gagacattcatcaccgtgcgaattatattgtcacaaaagttattttcaatgtgcataacatcaagattatgtctcaataaatt |
264 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28498157 |
gagacattcatcaccgtgtgaattatattgtcacaaaagttcttttcaatgtgcataacatcaagattatgtctcaataaatt |
28498239 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 31 - 309
Target Start/End: Complemental strand, 14322831 - 14322553
Alignment:
| Q |
31 |
acaaacagattttgcttcatcagcaataagactattaatagcctttggttttagatattttccattttgaagaagttgtagctccatttctggtctctta |
130 |
Q |
| |
|
|||||||||||||||||||| || | |||||| || ||| || |||||| || ||||||||||| ||||| ||||||| |||||||||||||| ||| |
|
|
| T |
14322831 |
acaaacagattttgcttcattagaggttagactaaaaacagctttgggttttcgaaattttccatttggaagaggttgtagttccatttctggtctttta |
14322732 |
T |
|
| Q |
131 |
caatgcaatggcaagtccattctagccttctcattatcttttgatttaccagagacattcatcaccgtgcgaattatattgtcacaaaagttattttcaa |
230 |
Q |
| |
|
|||| | | ||| |||| ||||||||||||||||||||||| |||||| |||||||||||||| ||| ||| |||||||||| |||| || ||||||| |
|
|
| T |
14322731 |
caataaaccgacaaatccagtctagccttctcattatcttttgttttaccggagacattcatcactgtgtgaagtatattgtcaaaaaaattcttttcaa |
14322632 |
T |
|
| Q |
231 |
tgtgcataacatcaagattatgtctcaataaattatctttccagtaagggagatcccagaagatacttcttttggtcca |
309 |
Q |
| |
|
||||||||||||||||||||||||| | |||||| |||||| ||||||| || |||||||| |||||||||||| |||| |
|
|
| T |
14322631 |
tgtgcataacatcaagattatgtcttagtaaattgtctttcaagtaaggaaggtcccagaaaatacttcttttgatcca |
14322553 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 209 - 314
Target Start/End: Complemental strand, 28955223 - 28955118
Alignment:
| Q |
209 |
ttgtcacaaaagttattttcaatgtgcataacatcaagattatgtctcaataaattatctttccagtaagggagatcccagaagatacttcttttggtcc |
308 |
Q |
| |
|
|||||| |||| || || ||||||||||| ||||||||||||||||| | || ||||||||||| || ||||| ||||| || |||||| |||| |||| |
|
|
| T |
28955223 |
ttgtcaaaaaaattcttctcaatgtgcattacatcaagattatgtctgagcaagttatctttccaataggggaggtcccaaaatatacttttttttgtcc |
28955124 |
T |
|
| Q |
309 |
aatggt |
314 |
Q |
| |
|
| |||| |
|
|
| T |
28955123 |
agtggt |
28955118 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0005 (Bit Score: 149; Significance: 1e-78; HSPs: 1)
Name: scaffold0005
Description:
Target: scaffold0005; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 7 - 311
Target Start/End: Original strand, 31137 - 31441
Alignment:
| Q |
7 |
catcatcaattctttcaaccattgacaaacagattttgcttcatcagcaataagactattaatagcctttggttttagatattttccattttgaagaagt |
106 |
Q |
| |
|
|||| |||||||||| ||||| |||||||||||||| |||||| || | | ||||| || |||||| ||||| | ||||||||||||| |||||||| |
|
|
| T |
31137 |
catcctcaattcttttaaccactgacaaacagatttcgcttcagcactggttaaactataaacagccttgggtttcaaatattttccatttggaagaagt |
31236 |
T |
|
| Q |
107 |
tgtagctccatttctggtctcttacaatgcaatggcaagtccattctagccttctcattatcttttgatttaccagagacattcatcaccgtgcgaatta |
206 |
Q |
| |
|
| || |||||| |||||||||||||||| | |||||| ||||||||||||||||| |||||||||| ||||| ||||||||||||||| ||| || || |
|
|
| T |
31237 |
tttaactccatatctggtctcttacaatactctggcaaatccattctagccttctcgttatcttttgttttactagagacattcatcactgtgttaacta |
31336 |
T |
|
| Q |
207 |
tattgtcacaaaagttattttcaatgtgcataacatcaagattatgtctcaataaattatctttccagtaagggagatcccagaagatacttcttttggt |
306 |
Q |
| |
|
||||||||||||| || |||||||||||||||||||| ||||||||||| | |||||| ||||||||||||||||||||||| || |||||||||||||| |
|
|
| T |
31337 |
tattgtcacaaaaattcttttcaatgtgcataacatccagattatgtcttagtaaattgtctttccagtaagggagatcccaaaaaatacttcttttggt |
31436 |
T |
|
| Q |
307 |
ccaat |
311 |
Q |
| |
|
||||| |
|
|
| T |
31437 |
ccaat |
31441 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 145; Significance: 3e-76; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 7 - 311
Target Start/End: Original strand, 358453 - 358757
Alignment:
| Q |
7 |
catcatcaattctttcaaccattgacaaacagattttgcttcatcagcaataagactattaatagcctttggttttagatattttccattttgaagaagt |
106 |
Q |
| |
|
|||| |||||||||| ||||| |||||||||||||| |||||| || | | ||||| || | |||| ||||| ||||||||||||||| |||||||| |
|
|
| T |
358453 |
catcctcaattcttttaaccactgacaaacagatttcgcttcagcactggttaaactataaacaaccttgggtttcagatattttccatttggaagaagt |
358552 |
T |
|
| Q |
107 |
tgtagctccatttctggtctcttacaatgcaatggcaagtccattctagccttctcattatcttttgatttaccagagacattcatcaccgtgcgaatta |
206 |
Q |
| |
|
| || |||||| |||||||||||||||| | |||||| ||||||||||| ||||| |||||||||| ||||||||||||||||||||| ||| || || |
|
|
| T |
358553 |
tttaactccatatctggtctcttacaatactctggcaaatccattctagctttctcgttatcttttgttttaccagagacattcatcactgtgttaacta |
358652 |
T |
|
| Q |
207 |
tattgtcacaaaagttattttcaatgtgcataacatcaagattatgtctcaataaattatctttccagtaagggagatcccagaagatacttcttttggt |
306 |
Q |
| |
|
||||||||||||| || |||||||||||||||||||| | ||||||||| | |||||| ||||||||||||||||||||||| || |||||||||||||| |
|
|
| T |
358653 |
tattgtcacaaaaattcttttcaatgtgcataacatccatattatgtcttagtaaattgtctttccagtaagggagatcccaaaaaatacttcttttggt |
358752 |
T |
|
| Q |
307 |
ccaat |
311 |
Q |
| |
|
||||| |
|
|
| T |
358753 |
ccaat |
358757 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 137; Significance: 2e-71; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 7 - 311
Target Start/End: Complemental strand, 21597176 - 21596873
Alignment:
| Q |
7 |
catcatcaattctttcaaccattgacaaacagattttgcttcatcagcaataagactattaatagcctttggttttagatattttccattttgaagaagt |
106 |
Q |
| |
|
|||| |||||||||| ||||| |||||||||||||| |||||| || | | ||||| || |||||| ||||| ||||||||||||||| |||||||| |
|
|
| T |
21597176 |
catcctcaattcttttaaccactgacaaacagatttcgcttcagcactggttaaactataaacagccttgggtttcagatattttccatttggaagaagt |
21597077 |
T |
|
| Q |
107 |
tgtagctccatttctggtctcttacaatgcaatggcaagtccattctagccttctcattatcttttgatttaccagagacattcatcaccgtgcgaatta |
206 |
Q |
| |
|
| | |||||| |||||||||||||||| | |||||| ||||||||||||||||| |||||||||| ||||| ||||||||||||||| ||| || || |
|
|
| T |
21597076 |
tttgactccatatctggtctcttacaatactctggcaaatccattctagccttctcgttatcttttgttttactagagacattcatcactgtgttaacta |
21596977 |
T |
|
| Q |
207 |
tattgtcacaaaagttattttcaatgtgcataacatcaagattatgtctcaataaattatctttccagtaagggagatcccagaagatacttcttttggt |
306 |
Q |
| |
|
||||||||||||| || |||||||||||||||||||| ||||||||||| | |||||| ||||||||| ||||||||||| | || |||||||||||||| |
|
|
| T |
21596976 |
tattgtcacaaaaattcttttcaatgtgcataacatccagattatgtcttagtaaattgtctttccag-aagggagatccaaaaaaatacttcttttggt |
21596878 |
T |
|
| Q |
307 |
ccaat |
311 |
Q |
| |
|
||||| |
|
|
| T |
21596877 |
ccaat |
21596873 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 150 - 314
Target Start/End: Original strand, 4965358 - 4965522
Alignment:
| Q |
150 |
ttctagccttctcattatcttttgatttaccagagacattcatcaccgtgcgaattatattgtcacaaaagttattttcaatgtgcataacatcaagatt |
249 |
Q |
| |
|
|||||||||||||||| ||||||| ||| || ||||| |||||| ||| || ||| |||||| | | || || ||||||||||| ||||||||||| |
|
|
| T |
4965358 |
ttctagccttctcattgtcttttgttttgcctttgacatccatcactgtgttaaatatgttgtcaaagacattcttctcaatgtgcattacatcaagatt |
4965457 |
T |
|
| Q |
250 |
atgtctcaataaattatctttccagtaagggagatcccagaagatacttcttttggtccaatggt |
314 |
Q |
| |
|
|||||| | || ||||||||||| || ||||| ||||| || ||||| ||||| ||||| |||| |
|
|
| T |
4965458 |
atgtctgagcaagttatctttccaatatgggaggtcccaaaatatactccttttagtccagtggt |
4965522 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 150 - 314
Target Start/End: Complemental strand, 35596967 - 35596803
Alignment:
| Q |
150 |
ttctagccttctcattatcttttgatttaccagagacattcatcaccgtgcgaattatattgtcacaaaagttattttcaatgtgcataacatcaagatt |
249 |
Q |
| |
|
|||||||||||||||| ||||||| ||| || ||||| |||||| ||| || ||| |||||| | | || || ||||||||||| ||||||||||| |
|
|
| T |
35596967 |
ttctagccttctcattgtcttttgttttgcctttgacatccatcactgtgttaaatatgttgtcaaagacattcttctcaatgtgcattacatcaagatt |
35596868 |
T |
|
| Q |
250 |
atgtctcaataaattatctttccagtaagggagatcccagaagatacttcttttggtccaatggt |
314 |
Q |
| |
|
|||||| | || ||||||||||| || ||||| ||||| || ||||| ||||| ||||| |||| |
|
|
| T |
35596867 |
atgtctgagcaagttatctttccaatatgggaggtcccaaaatatactccttttagtccagtggt |
35596803 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 119 - 258
Target Start/End: Original strand, 19594117 - 19594253
Alignment:
| Q |
119 |
tctggtctcttacaatgcaatggcaagtccattctagccttctcattatcttttgatttaccagagacattcatcaccgtgcgaattatattgtcacaaa |
218 |
Q |
| |
|
|||||||||||||||| |||||||| ||| || ||||||||||||||| |||| |||||| ||||||||||| | | ||| |||||||||||| | |
|
|
| T |
19594117 |
tctggtctcttacaattcaatggcatgtcaatcatagccttctcattatactttg-tttacctaagacattcatcgc--tatgaagtatattgtcacata |
19594213 |
T |
|
| Q |
219 |
agttattttcaatgtgcataacatcaagattatgtctcaa |
258 |
Q |
| |
|
| |||||| || |||||||| ||||| || ||||||||| |
|
|
| T |
19594214 |
aagtatttttaacgtgcataagatcaaaatcatgtctcaa |
19594253 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 150 - 303
Target Start/End: Original strand, 37367684 - 37367837
Alignment:
| Q |
150 |
ttctagccttctcattatcttttgatttaccagagacattcatcaccgtgcgaattatattgtcacaaaagttattttcaatgtgcataacatcaagatt |
249 |
Q |
| |
|
|||||||||||||||| ||||||| ||| || ||||| |||||| ||| || ||| |||||| | | || || ||||||||||| ||||||||||| |
|
|
| T |
37367684 |
ttctagccttctcattgtcttttgttttgcctttgacatccatcactgtgttaaatatgttgtcaaagacattcttctcaatgtgcattacatcaagatt |
37367783 |
T |
|
| Q |
250 |
atgtctcaataaattatctttccagtaagggagatcccagaagatacttctttt |
303 |
Q |
| |
|
|||||| | || ||||||||||| || | ||| ||||| || ||||| ||||| |
|
|
| T |
37367784 |
atgtctgagcaagttatctttccaatatgagaggtcccaaaatatactcctttt |
37367837 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 125; Significance: 3e-64; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 71 - 311
Target Start/End: Original strand, 2064028 - 2064267
Alignment:
| Q |
71 |
gcctttggttttagatattttccattttgaagaagttgtagctccatttctggtctcttacaatgcaatggcaagtccattctagccttctcattatctt |
170 |
Q |
| |
|
|||||| |||| ||||| ||| ||||| ||||||||| || || ||| || |||||||||||| |||||||| ||||||| ||||||||||||||||| |
|
|
| T |
2064028 |
gccttttgtttcagatacttttcatttggaagaagttttaacttcatatccagtctcttacaatataatggcaaatccattccagccttctcattatctt |
2064127 |
T |
|
| Q |
171 |
ttgatttaccagagacattcatcaccgtgcgaattatattgtcacaaaagttattttcaatgtgcataacatcaagattatgtctcaataaattatcttt |
270 |
Q |
| |
|
||| |||||||||||||||||||| ||| ||| ||||||||||||||| || |||||||||||||||||||||||||||||||| | |||||| ||||| |
|
|
| T |
2064128 |
ttgttttaccagagacattcatcattgtgtgaactatattgtcacaaaaattcttttcaatgtgcataacatcaagattatgtcttagtaaattgtcttt |
2064227 |
T |
|
| Q |
271 |
ccagtaagggagatcccagaagatacttcttttggtccaat |
311 |
Q |
| |
|
|||||||||||| ||||| || ||||||||||||||||||| |
|
|
| T |
2064228 |
ccagtaagggaggtccca-aaaatacttcttttggtccaat |
2064267 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 150 - 309
Target Start/End: Original strand, 37571027 - 37571186
Alignment:
| Q |
150 |
ttctagccttctcattatcttttgatttaccagagacattcatcaccgtgcgaattatattgtcacaaaagttattttcaatgtgcataacatcaagatt |
249 |
Q |
| |
|
|||||||||||||| | ||||||| ||| || ||||| |||||| ||| || ||| |||||| | | || || ||||||||||| ||||||||||| |
|
|
| T |
37571027 |
ttctagccttctcagtgtcttttgtttttcctttgacatccatcactgtgttaaatatgttgtcaaagacattcttctcaatgtgcattacatcaagatt |
37571126 |
T |
|
| Q |
250 |
atgtctcaataaattatctttccagtaagggagatcccagaagatacttcttttggtcca |
309 |
Q |
| |
|
|||||| | || ||||||||||| || ||||| ||||| || ||||| ||||| ||||| |
|
|
| T |
37571127 |
atgtctgagcaagttatctttccaatatgggaggtcccaaaatatactccttttagtcca |
37571186 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 209 - 314
Target Start/End: Original strand, 22123638 - 22123743
Alignment:
| Q |
209 |
ttgtcacaaaagttattttcaatgtgcataacatcaagattatgtctcaataaattatctttccagtaagggagatcccagaagatacttcttttggtcc |
308 |
Q |
| |
|
|||||| |||| || || ||||||||||| ||||||||||||||||| | || ||||||||||| || ||||| | ||| || |||||| |||| |||| |
|
|
| T |
22123638 |
ttgtcaaaaaaattcttctcaatgtgcattacatcaagattatgtctgagcaagttatctttccaataggggaggttccaaaatatacttttttttgtcc |
22123737 |
T |
|
| Q |
309 |
aatggt |
314 |
Q |
| |
|
| |||| |
|
|
| T |
22123738 |
agtggt |
22123743 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 118; Significance: 5e-60; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 32 - 309
Target Start/End: Complemental strand, 23959447 - 23959171
Alignment:
| Q |
32 |
caaacagattttgcttcatcagcaataagactattaatagcctttggttttagatattttccattttgaagaagttgtagctccatttctggtctcttac |
131 |
Q |
| |
|
|||||||||||||||||||||| | |||||| || ||| || |||||| || ||||||||||| ||||| ||||||| |||||||||||||| |||| |
|
|
| T |
23959447 |
caaacagattttgcttcatcagaggttagactaa-aacagctttgggttttcgaaattttccatttggaagaggttgtagttccatttctggtcttttac |
23959349 |
T |
|
| Q |
132 |
aatgcaatggcaagtccattctagccttctcattatcttttgatttaccagagacattcatcaccgtgcgaattatattgtcacaaaagttattttcaat |
231 |
Q |
| |
|
||| | | ||| |||| ||||||||||||||||||||||| |||||| |||||||||||||| ||| ||| |||||||||| ||| || |||||||| |
|
|
| T |
23959348 |
aataaaccgacaaatccagtctagccttctcattatcttttgttttaccggagacattcatcactgtgtgaagtatattgtcaaaaatattcttttcaat |
23959249 |
T |
|
| Q |
232 |
gtgcataacatcaagattatgtctcaataaattatctttccagtaagggagatcccagaagatacttcttttggtcca |
309 |
Q |
| |
|
|||||||||||||||||||||||| | |||||| |||||| ||||||| || |||||||| |||||||||||| |||| |
|
|
| T |
23959248 |
gtgcataacatcaagattatgtcttagtaaattgtctttcaagtaaggaaggtcccagaaaatacttcttttgatcca |
23959171 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0029 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0029
Description:
Target: scaffold0029; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 209 - 314
Target Start/End: Original strand, 57756 - 57861
Alignment:
| Q |
209 |
ttgtcacaaaagttattttcaatgtgcataacatcaagattatgtctcaataaattatctttccagtaagggagatcccagaagatacttcttttggtcc |
308 |
Q |
| |
|
|||||| |||| || || ||||||||||| ||||||||||||||||| | || ||||||||||| || ||||| ||||| || ||||| |||| |||| |
|
|
| T |
57756 |
ttgtcaaaaaaattcttctcaatgtgcattacatcaagattatgtctgagcaagttatctttccaataggggaggtcccaaaatatactcttttttgtcc |
57855 |
T |
|
| Q |
309 |
aatggt |
314 |
Q |
| |
|
| |||| |
|
|
| T |
57856 |
agtggt |
57861 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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