View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8613_low_8 (Length: 389)
Name: NF8613_low_8
Description: NF8613
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8613_low_8 |
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| [»] scaffold0118 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 308; Significance: 1e-173; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 24 - 382
Target Start/End: Complemental strand, 9416665 - 9416299
Alignment:
| Q |
24 |
acatcatacatataaccatttttggcaagaatgaaaagtgatataggtgctgaatcaaaacttataataattgcaaccaagtgcatttcactgatagtcg |
123 |
Q |
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| T |
9416665 |
acatcatacatataaccatttttggcaagaatgaaaagtaatataggtgctgaatcaaaacttataataattgcaaccaagtgcatttcactgatagtcg |
9416566 |
T |
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| Q |
124 |
ttgaattcataggtatcaattttgattcacacaccatttatccttccttcccttacacaatttcaatgtcaccttgctacaaatcaaatgggttgactat |
223 |
Q |
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| T |
9416565 |
ttgaatttataggtatcaattttgattcacacaccatttatccttccttcccttacacaatttcaacgtcaccttgctacaaatcaaatgggttgactat |
9416466 |
T |
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| Q |
224 |
taatatctccttaatactgcattttgtttttgtcctccacattatataaccaccactttaatttcctactaattccactttatttcctttag---tgtgt |
320 |
Q |
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| T |
9416465 |
taatatctccttaatactgcattttgtttttgtcctccacattatataaccaccactttaatttcctactaattccactttatttcctttagtcatgtgt |
9416366 |
T |
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| Q |
321 |
catacgtttttacttctcat--tagtgtt---ataaaacccctggcctaagccaacaagtataatct |
382 |
Q |
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| T |
9416365 |
catacgtttttacttctcattatagtgttataataaaacccctggcctacgccaacaagtatgatct |
9416299 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 234 - 338
Target Start/End: Original strand, 1460719 - 1460819
Alignment:
| Q |
234 |
ttaatactgcattttgtttttgtcctccacattatataaccaccactttaatttcctactaattccactttatttcctttagtgtgtcatacgtttttac |
333 |
Q |
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| T |
1460719 |
ttaaaactgcatttcgtttttgtcctccaca----ataatcaccagtttaatttcctactaattccactttatttcctttagtgtgtaatgcggttttac |
1460814 |
T |
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| Q |
334 |
ttctc |
338 |
Q |
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| T |
1460815 |
ttctc |
1460819 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0118 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0118
Description:
Target: scaffold0118; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 36 - 93
Target Start/End: Original strand, 9554 - 9611
Alignment:
| Q |
36 |
taaccatttttggcaagaatgaaaagtgatataggtgctgaatcaaaacttataataa |
93 |
Q |
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| T |
9554 |
taaccatttttggcaagaaggaaaagtagcataggtgatggatcaaaacttataataa |
9611 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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