View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8613_low_9 (Length: 387)

Name: NF8613_low_9
Description: NF8613
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8613_low_9
NF8613_low_9
[»] chr3 (9 HSPs)
chr3 (18-215)||(36858526-36858733)
chr3 (233-373)||(36858335-36858475)
chr3 (53-196)||(36859674-36859822)
chr3 (88-207)||(6587930-6588045)
chr3 (91-207)||(23564135-23564252)
chr3 (91-197)||(29069840-29069947)
chr3 (91-197)||(52417890-52417996)
chr3 (91-199)||(49261975-49262080)
chr3 (53-85)||(941541-941573)
[»] chr7 (6 HSPs)
chr7 (91-207)||(2407339-2407455)
chr7 (94-178)||(1780484-1780568)
chr7 (53-178)||(7875726-7875856)
chr7 (108-207)||(40352652-40352751)
chr7 (106-207)||(21939274-21939375)
chr7 (108-171)||(40352948-40353011)
[»] scaffold0007 (2 HSPs)
scaffold0007 (92-207)||(201603-201716)
scaffold0007 (88-207)||(201320-201438)
[»] chr4 (5 HSPs)
chr4 (91-207)||(4460180-4460296)
chr4 (53-178)||(51355930-51356060)
chr4 (53-110)||(1095859-1095921)
chr4 (53-90)||(2210521-2210558)
chr4 (88-128)||(53578837-53578877)
[»] chr8 (2 HSPs)
chr8 (88-207)||(18896440-18896559)
chr8 (53-85)||(42793113-42793145)
[»] chr1 (1 HSPs)
chr1 (91-207)||(35820037-35820153)
[»] chr5 (5 HSPs)
chr5 (91-207)||(5003508-5003624)
chr5 (55-197)||(29027872-29028018)
chr5 (113-195)||(16185211-16185293)
chr5 (112-178)||(16645017-16645083)
chr5 (53-90)||(20364816-20364853)
[»] scaffold0010 (1 HSPs)
scaffold0010 (55-166)||(122468-122582)
[»] chr6 (1 HSPs)
chr6 (53-90)||(499248-499285)


Alignment Details
Target: chr3 (Bit Score: 140; Significance: 3e-73; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 18 - 215
Target Start/End: Complemental strand, 36858733 - 36858526
Alignment:
Q  18 tcagtacaaccccgttaaggacaggtttcactctt---------catcctactcacttaagtgaggtgccacgtgtgtgttggtcaaaattggactaggg 108  Q
    ||||||| |||||||||||||||||||||||||||         |||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36858733 tcagtaccaccccgttaaggacaggtttcactctttcattctttcatcttactcacttaagtgaggtgccacgtgtgtgttggtcaaaattggactaggg 36858634  T
Q  109 ggtcaaaagtgaaaaaggggataaacttaggtggctgattagttattgctttttatag-ggggctaaaatcataagttcgtgatacttagagggccaaaa 207  Q
    ||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||| ||||| |||||  ||||||||||||||||||||||||||||    
T  36858633 ggtcaaaagtgcaaaaggggataaacttaggtggctaattagttattgctttttataggggggccaaaattgtaagttcgtgatacttagagggccaaaa 36858534  T
Q  208 atgatatt 215  Q
    ||||||||    
T  36858533 atgatatt 36858526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 233 - 373
Target Start/End: Complemental strand, 36858475 - 36858335
Alignment:
Q  233 taagattatttatagtcacacttcaaatagagccagctacatttaaatttacttaatttaatcatcatattcaaaattgtctttgttcatataatttttt 332  Q
    ||||| ||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  36858475 taagactatttatagtcacacctcaaatagagccagctacatttaaatgtacttaatttaatcataatattcaaaattgtctttgttcatataatttttt 36858376  T
Q  333 aaaaactcttttcattaacactttaaatcgatcttcatctc 373  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  36858375 aaaaactcttttcattaacactttaaatcgatcttcatctc 36858335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 53 - 196
Target Start/End: Original strand, 36859674 - 36859822
Alignment:
Q  53 catcctactcacttaagtgaggtgccacgtgtgtg-----ttggtcaaaattggactagggggtcaaaagtgaaaaaggggataaacttaggtggctgat 147  Q
    |||||||||||||||| |||||||||  ||||| |     |||||| ||||||||| | ||||||||||||| ||||| || |||||||| | |||||||    
T  36859674 catcctactcacttaattgaggtgccgtgtgtgcgttgacttggtctaaattggaccaaggggtcaaaagtgtaaaagagggtaaacttatggggctgat 36859773  T
Q  148 tagttattgctttttatagggggctaaaatcataagttcgtgatactta 196  Q
    ||||||||| ||||||||| |||| ||||||  ||||||||||||||||    
T  36859774 tagttattgttttttatagagggccaaaatcgcaagttcgtgatactta 36859822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 88 - 207
Target Start/End: Complemental strand, 6588045 - 6587930
Alignment:
Q  88 ttggtcaaaattggactagggggtcaaaagtgaaaaaggggataaacttaggtggctgattagttattgctttttatagggggctaaaatcataagttcg 187  Q
    |||||||||||||| || |||   |||||||| |||||||| |||||||| | |||||||| ||||||| |||||||||||||| |||||   ||| | |    
T  6588045 ttggtcaaaattggtcttgggc--caaaagtgcaaaagggggtaaacttatg-ggctgatttgttattg-tttttatagggggcgaaaattgcaagattg 6587950  T
Q  188 tgatacttagagggccaaaa 207  Q
    ||||||||||||||| ||||    
T  6587949 tgatacttagagggcaaaaa 6587930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 91 - 207
Target Start/End: Complemental strand, 23564252 - 23564135
Alignment:
Q  91 gtcaaaattggactagggggtcaaaagtgaaaaaggggataaacttaggtggctgattagttattg-ctttttatagggggctaaaatcataagttcgtg 189  Q
    ||||||||||| || ||||| |||||||| |||| ||| ||||||||   |||| ||| |||||||  |||||||||| ||| ||||||  ||| | |||    
T  23564252 gtcaaaattggtctggggggccaaaagtgtaaaaaggggtaaacttaatgggctaatttgttattgtttttttataggaggccaaaatcgcaagattgtg 23564153  T
Q  190 atacttagagggccaaaa 207  Q
    |||||||||||| |||||    
T  23564152 atacttagagggtcaaaa 23564135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 91 - 197
Target Start/End: Complemental strand, 29069947 - 29069840
Alignment:
Q  91 gtcaaaattggactagggggtcaaaagtgaaaaaggggataaacttaggtggctgattagttattg-ctttttatagggggctaaaatcataagttcgtg 189  Q
    ||||||||||| |  |||||||||||||| ||||| ||||||||||||  | || ||| |||||||  |||||||||||||  |||||| |||| | |||    
T  29069947 gtcaaaattggtccggggggtcaaaagtgcaaaagaggataaacttagtggactaatttgttattgtttttttatagggggtcaaaatcgtaagattgtg 29069848  T
Q  190 atacttag 197  Q
    ||| ||||    
T  29069847 atagttag 29069840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 91 - 197
Target Start/End: Complemental strand, 52417996 - 52417890
Alignment:
Q  91 gtcaaaattggactagggggtcaaaagtgaaaaaggggataaacttaggtggctgattagttattgctttttatagggggctaaaatcataagttcgtga 190  Q
    |||||||||||  | || || |||||||| ||||||||  ||||||| | |||||||| ||||||| ||||||| || | | ||||||| ||| | ||||    
T  52417996 gtcaaaattggtttgggaggccaaaagtgcaaaagggggaaaacttacggggctgatttgttattgttttttattggagaccaaaatcacaaggttgtga 52417897  T
Q  191 tacttag 197  Q
    |||||||    
T  52417896 tacttag 52417890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 91 - 199
Target Start/End: Complemental strand, 49262080 - 49261975
Alignment:
Q  91 gtcaaaattggactagggggtcaaaagtgaaaaaggggataaacttaggtggctgattagttattgctttttatagggggctaaaatcataagttcgtga 190  Q
    ||||||||||| ||  ||| ||||||||| ||||| || |||||||||| || |||||  |||||  |||||||||||||| ||||||  ||| | ||||    
T  49262080 gtcaaaattggtct--gggatcaaaagtgtaaaagagggtaaacttaggaggttgatttattatta-tttttatagggggccaaaatcgcaagattgtga 49261984  T
Q  191 tacttagag 199  Q
    |||||||||    
T  49261983 tacttagag 49261975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 53 - 85
Target Start/End: Original strand, 941541 - 941573
Alignment:
Q  53 catcctactcacttaagtgaggtgccacgtgtg 85  Q
    ||||| |||||||||||||||||||||||||||    
T  941541 catccaactcacttaagtgaggtgccacgtgtg 941573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 61; Significance: 4e-26; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 91 - 207
Target Start/End: Complemental strand, 2407455 - 2407339
Alignment:
Q  91 gtcaaaattggactagggggtcaaaagtgaaaaaggggataaacttaggtggctgattagttattgctttttatagggggctaaaatcataagttcgtga 190  Q
    ||||||||||| | |||||| |||||||| |||||||| ||||||||||||||||||| ||||||| |||||||||||| | ||||||  ||| | ||||    
T  2407455 gtcaaaattggtccagggggccaaaagtgcaaaagggggtaaacttaggtggctgatttgttattgttttttataggggaccaaaatcgcaagattgtga 2407356  T
Q  191 tacttagagggccaaaa 207  Q
    ||||||| |||||||||    
T  2407355 tacttagggggccaaaa 2407339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 94 - 178
Target Start/End: Original strand, 1780484 - 1780568
Alignment:
Q  94 aaaattggactagggggtcaaaagtgaaaaaggggataaacttaggtggctgattagttattgctttttatagggggctaaaatc 178  Q
    ||||||||||||||||| ||||||||||||||||| | |||||| | |||||||| ||||||| |||||||||| ||| ||||||    
T  1780484 aaaattggactagggggacaaaagtgaaaaagggggtgaacttaaggggctgatttgttattgttttttataggaggccaaaatc 1780568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 53 - 178
Target Start/End: Complemental strand, 7875856 - 7875726
Alignment:
Q  53 catcctactcacttaagtgaggtgccacgtgtgtgttg-----gtcaaaattggactagggggtcaaaagtgaaaaaggggataaacttaggtggctgat 147  Q
    |||| ||||||||||||| ||||| |||||||| ||||     || |||||||||||||  || |||||||| ||||  || |||||||| | |||||||    
T  7875856 catcttactcacttaagtcaggtgtcacgtgtgcgttgactctgttaaaattggactagatggccaaaagtgcaaaaatgggtaaacttaagaggctgat 7875757  T
Q  148 tagttattgctttttatagggggctaaaatc 178  Q
    | ||||||| |||||||||||| | ||||||    
T  7875756 ttgttattgttttttataggggaccaaaatc 7875726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 108 - 207
Target Start/End: Complemental strand, 40352751 - 40352652
Alignment:
Q  108 gggtcaaaagtgaaaaaggggataaacttaggtggctgattagttattgctttttatagggggctaaaatcataagttcgtgatacttagagggccaaaa 207  Q
    |||||||||||| |||| ||| |||||||| | |||||||| ||||||| |||||||||| | | ||||||  ||| | ||||||||||| ||| |||||    
T  40352751 gggtcaaaagtgtaaaaaggggtaaacttatggggctgatttgttattgttttttataggcgaccaaaatcgcaagattgtgatacttagggggtcaaaa 40352652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 106 - 207
Target Start/End: Original strand, 21939274 - 21939375
Alignment:
Q  106 gggggtcaaaagtgaaaaaggggataaacttaggtggctgattagttattgctttttatagggggctaaaatcataagttcgtgatacttagagggccaa 205  Q
    ||||| ||||| || |||||||| |||||||||| || ||  | || |||| ||||| |||||||| ||||||  || |||||||||||||| |||||||    
T  21939274 gggggccaaaactgcaaaaggggctaaacttagggggttggattgtaattgttttttttagggggccaaaatcgcaacttcgtgatacttagggggccaa 21939373  T
Q  206 aa 207  Q
    ||    
T  21939374 aa 21939375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 108 - 171
Target Start/End: Original strand, 40352948 - 40353011
Alignment:
Q  108 gggtcaaaagtgaaaaaggggataaacttaggtggctgattagttattgctttttatagggggc 171  Q
    |||||||||||| ||||  ||||||||||| | ||||| || ||||||| ||||||||||||||    
T  40352948 gggtcaaaagtgcaaaataggataaacttaagaggctggtttgttattgttttttatagggggc 40353011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 52; Significance: 1e-20; HSPs: 2)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 92 - 207
Target Start/End: Original strand, 201603 - 201716
Alignment:
Q  92 tcaaaattggactagggggtcaaaagtgaaaaaggggataaacttaggtggctgattagttattgctttttatagggggctaaaatcataagttcgtgat 191  Q
    |||||||||| || ||||| |||||||| |||||||| ||||| |||| || || || ||||||| |||||||||||||||||||||||||| | |||||    
T  201603 tcaaaattggtct-gggggccaaaagtgcaaaagggggtaaacatagggggttggtttgttattg-tttttatagggggctaaaatcataagattgtgat 201700  T
Q  192 acttagagggccaaaa 207  Q
    |||||| |||||||||    
T  201701 acttagggggccaaaa 201716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 88 - 207
Target Start/End: Complemental strand, 201438 - 201320
Alignment:
Q  88 ttggtcaaaattggactagggggtcaaaagtgaaaaaggggataaacttaggtggctgattagttattgctttttatagggggctaaaatcataagttcg 187  Q
    |||||||||||||| || |||| |||||||||||||||||| |||||||||| ||||||||  |||||| |||||| || |||  ||||||  ||| | |    
T  201438 ttggtcaaaattggtctgggggatcaaaagtgaaaaagggg-taaacttagggggctgatttattattgttttttacagagggtcaaaatcgcaagattg 201340  T
Q  188 tgatacttagagggccaaaa 207  Q
    |||||||||| ||| |||||    
T  201339 tgatacttagggggtcaaaa 201320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 45; Significance: 2e-16; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 91 - 207
Target Start/End: Complemental strand, 4460296 - 4460180
Alignment:
Q  91 gtcaaaattggactagggggtcaaaagtgaaaaaggggataaacttaggtggctgattagttattgctttttatagggggctaaaatcataagttcgtga 190  Q
    ||||||||||| || || || |||||||| |||||||| |||||||||| | |||||| ||||||  |||||||||||||  ||||||| ||| | ||||    
T  4460296 gtcaaaattggtctgggaggccaaaagtgcaaaagggggtaaacttaggggactgatttgttattattttttatagggggtcaaaatcacaagattgtga 4460197  T
Q  191 tacttagagggccaaaa 207  Q
    |||||||  ||||||||    
T  4460196 tacttaggaggccaaaa 4460180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 53 - 178
Target Start/End: Original strand, 51355930 - 51356060
Alignment:
Q  53 catcctactcacttaagtgaggtgccacgtgtgtgttg-----gtcaaaattggactagggggtcaaaagtgaaaaaggggataaacttaggtggctgat 147  Q
    ||||||||||| ||||||||||||||||||||||||||     ||||||||| |  |  ||||  ||||||| |||||||| |||||||| | ||||||     
T  51355930 catcctactcatttaagtgaggtgccacgtgtgtgttgactgagtcaaaattagtttgaggggctaaaagtgcaaaagggggtaaacttaag-ggctgac 51356028  T
Q  148 tagttattg-ctttttatagggggctaaaatc 178  Q
    | |||||||  |||||||||||||| ||||||    
T  51356029 ttgttattgtttttttatagggggccaaaatc 51356060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 53 - 110
Target Start/End: Complemental strand, 1095921 - 1095859
Alignment:
Q  53 catcctactcacttaagtgaggtgccacgtgtgtgttg-----gtcaaaattggactaggggg 110  Q
    |||||||||||||| |||||||||||||||||| ||||     ||||||||||| ||||||||    
T  1095921 catcctactcactttagtgaggtgccacgtgtgcgttgactcagtcaaaattggcctaggggg 1095859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 53 - 90
Target Start/End: Complemental strand, 2210558 - 2210521
Alignment:
Q  53 catcctactcacttaagtgaggtgccacgtgtgtgttg 90  Q
    ||||| ||||||||||||||||||||||||||| ||||    
T  2210558 catcccactcacttaagtgaggtgccacgtgtgcgttg 2210521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 88 - 128
Target Start/End: Original strand, 53578837 - 53578877
Alignment:
Q  88 ttggtcaaaattggactagggggtcaaaagtgaaaaagggg 128  Q
    |||||||||||||| ||||||||||||||||| ||| ||||    
T  53578837 ttggtcaaaattggcctagggggtcaaaagtgcaaaggggg 53578877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 44; Significance: 6e-16; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 88 - 207
Target Start/End: Complemental strand, 18896559 - 18896440
Alignment:
Q  88 ttggtcaaaattggactagggggtcaaaagtgaaaaaggggataaacttaggtggctgattagttattgctttttatagggggctaaaatcataagttcg 187  Q
    |||||||||||||| ||  |||  |||||||| ||||||||||||||||||| ||||||||  |||||| |||||||||||| | ||||||  ||| | |    
T  18896559 ttggtcaaaattggtctgagggaccaaaagtgcaaaaggggataaacttagggggctgatttattattgttttttataggggaccaaaatcgcaagattg 18896460  T
Q  188 tgatacttagagggccaaaa 207  Q
    |||| ||||| || ||||||    
T  18896459 tgatgcttaggggaccaaaa 18896440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 53 - 85
Target Start/End: Original strand, 42793113 - 42793145
Alignment:
Q  53 catcctactcacttaagtgaggtgccacgtgtg 85  Q
    |||||||||||||||||||||||||||||||||    
T  42793113 catcctactcacttaagtgaggtgccacgtgtg 42793145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 91 - 207
Target Start/End: Original strand, 35820037 - 35820153
Alignment:
Q  91 gtcaaaattggactagggggtcaaaagtgaaaaaggggataaacttaggtggctgattagttattgctttt-tatagggggctaaaatcataagttcgtg 189  Q
    ||||||||||| |  || || |||||||| |||||||| |||||||||| |||||||| ||||||  |||| |||||||||| ||||||  ||| | |||    
T  35820037 gtcaaaattggtccgggaggccaaaagtgcaaaagggg-taaacttagggggctgatttgttattatttttttatagggggccaaaatcgcaagattgtg 35820135  T
Q  190 atacttagagggccaaaa 207  Q
    |||||||| |||||||||    
T  35820136 atacttagggggccaaaa 35820153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.000000000009; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 91 - 207
Target Start/End: Complemental strand, 5003624 - 5003508
Alignment:
Q  91 gtcaaaattggactagggggtcaaaagtgaaaaaggggataaacttaggtggctgattagttattgctttttatagggggctaaaatcataagttcgtga 190  Q
    ||||||||||| |  || || |||||||| ||||||||||||||||||  || ||||| ||||||| |||||||| |||   ||||||  ||| | ||||    
T  5003624 gtcaaaattggtccgggaggccaaaagtgcaaaaggggataaacttagagggttgatttgttattgttttttataagggatcaaaatcgcaagattgtga 5003525  T
Q  191 tacttagagggccaaaa 207  Q
    |||||||||| ||||||    
T  5003524 tacttagaggaccaaaa 5003508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 55 - 197
Target Start/End: Original strand, 29027872 - 29028018
Alignment:
Q  55 tcctactcacttaagtgaggtgccacgtgtgtgttg-----gtcaaaattggactagggggtcaaaagtgaaaaaggggataaacttaggtggctgatta 149  Q
    |||| |||||||||||||||||||||||||| |||      |||||||||||  | ||||||||||| || |||||||| |  ||||||| |   |  |     
T  29027872 tcctcctcacttaagtgaggtgccacgtgtgcgttcaattcgtcaaaattggtgt-gggggtcaaaactgcaaaaggggttggacttaggggttggggtc 29027970  T
Q  150 gttattgctttttatagggggctaaaatcataagttcgtgatacttag 197  Q
    || |||| |||||||||||||||||||||| ||||| |||||||||||    
T  29027971 gtaattgttttttatagggggctaaaatcacaagtttgtgatacttag 29028018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 113 - 195
Target Start/End: Complemental strand, 16185293 - 16185211
Alignment:
Q  113 aaaagtgaaaaaggggataaacttaggtggctgattagttattgctttttatagggggctaaaatcataagttcgtgatactt 195  Q
    ||||||| |||||  | |||||||| | |||||||| ||||||| |||||||| ||||||||||||  ||| | |||||||||    
T  16185293 aaaagtgcaaaagatggtaaacttaaggggctgatttgttattgttttttatacggggctaaaatcgcaagattgtgatactt 16185211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 112 - 178
Target Start/End: Complemental strand, 16645083 - 16645017
Alignment:
Q  112 caaaagtgaaaaaggggataaacttaggtggctgattagttattgctttttatagggggctaaaatc 178  Q
    |||| ||| |||| ||| |||||||||| |||||||| || |||| |||||||||||| ||||||||    
T  16645083 caaacgtgcaaaatggggtaaacttagggggctgatttgtgattgttttttataggggactaaaatc 16645017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 53 - 90
Target Start/End: Complemental strand, 20364853 - 20364816
Alignment:
Q  53 catcctactcacttaagtgaggtgccacgtgtgtgttg 90  Q
    ||||| |||||||||||||||| |||||||||||||||    
T  20364853 catccaactcacttaagtgaggagccacgtgtgtgttg 20364816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0010 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 55 - 166
Target Start/End: Complemental strand, 122582 - 122468
Alignment:
Q  55 tcctactcacttaagtgaggtgccacgtgtgtgttg-----gtcaaaattggactagggggtcaaaagtgaaaaaggggataaacttaggtggctgatta 149  Q
    |||||||| ||||||||||||| ||||||||  |||     ||||||||||||| | |||| |||||||| |||||||| |||| ||| | ||||||||     
T  122582 tcctactcgcttaagtgaggtgtcacgtgtgcattgagtgggtcaaaattggacca-ggggacaaaagtgcaaaagggggtaaatttaaggggctgattt 122484  T
Q  150 gttattgctttttatag 166  Q
    ||||||| |||||||||    
T  122483 gttattg-tttttatag 122468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 53 - 90
Target Start/End: Original strand, 499248 - 499285
Alignment:
Q  53 catcctactcacttaagtgaggtgccacgtgtgtgttg 90  Q
    ||||||||||||||||||||||||||||| ||| ||||    
T  499248 catcctactcacttaagtgaggtgccacgcgtgcgttg 499285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University