View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8614_low_1 (Length: 434)
Name: NF8614_low_1
Description: NF8614
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8614_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 388; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 9 - 420
Target Start/End: Original strand, 42963217 - 42963628
Alignment:
| Q |
9 |
agcagagagagacatacataccatgagagccattaattccttctgtagtctgcaattacacaaaaattgaataggatgaattaaactatgaaaatatatt |
108 |
Q |
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| T |
42963217 |
agcaaagagagacatacataccatgagagccattaattccttctgtagtctgcaattacacaaaaattgaataggatgaattaaactatcaaaatatatt |
42963316 |
T |
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| Q |
109 |
ctaccacatcaaagtttacaatttaaaataaaaagagtaaaaatgaacacaccataatcaaatttcatttcatgcatgagttctactcaaaatttgtaat |
208 |
Q |
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| T |
42963317 |
ctaccacatcaaagtttacaatttaaaataaaaagagtaaaaatgaacacacgataatcaaatttcatttcatgcatgagttctactcaaaatttgtaat |
42963416 |
T |
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| Q |
209 |
ttcaaatttgtttgcaatgaataaatccaaaaccaatcaagactaaacaaactaaactaggagatggaaaatcaaatttagaaatatttaagggggagaa |
308 |
Q |
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| T |
42963417 |
ttcaaatttgtttgcaatgaataaatcaaaaaccaatcaaaactaaacaaactaaattaggagatggaaaatcaaatttagaaatatttaagggggagaa |
42963516 |
T |
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| Q |
309 |
gatgaacctttgagaaacggaagttgtgtcagcaggaagaggagaagcgagaggcttcttggaggatgatcgacgatggcgactggccgctgattcaaca |
408 |
Q |
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| T |
42963517 |
gatgaacctttgagaaacggaagttgtgtcagcaggaagaggagaagcgagaggcttcttggaggatgatcgacgatggcgactggccgctgattcaaca |
42963616 |
T |
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| Q |
409 |
ggggaattttct |
420 |
Q |
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| T |
42963617 |
ggggaattttct |
42963628 |
T |
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