View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8614_low_3 (Length: 302)
Name: NF8614_low_3
Description: NF8614
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8614_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 115; Significance: 2e-58; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 14 - 144
Target Start/End: Complemental strand, 39591643 - 39591513
Alignment:
| Q |
14 |
gtttggtggttgtgtgttatataggtggagttctggctctgtttggtgccaacccttttgggctatctccttgaaattccatatgttatctatgctatta |
113 |
Q |
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| T |
39591643 |
gtttggtggttgtgtgttatataggtggagttctgcctctgtttggtgctaacccttttgggctatctccctgaaattccatatgttatctatgctatta |
39591544 |
T |
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| Q |
114 |
cctagtgttcaatttagcctttgtaagttgt |
144 |
Q |
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| T |
39591543 |
tctagtgttcaatttagcctttgtaagttgt |
39591513 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 15 - 144
Target Start/End: Original strand, 52980566 - 52980695
Alignment:
| Q |
15 |
tttggtggttgtgtgttatataggtggagttctggctctgtttggtgccaacccttttgggctatctccttgaaattccatatgttatctatgctattac |
114 |
Q |
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| T |
52980566 |
tttggtggttgtgtattatataggtggagttctggctctatttgatgctaacccttttgggctatctccctagaattccatatgttatctatgctattac |
52980665 |
T |
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| Q |
115 |
ctagtgttcaatttagcctttgtaagttgt |
144 |
Q |
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| T |
52980666 |
ctagtgttcaatttagcctttctaagttgt |
52980695 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 76; Significance: 4e-35; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 14 - 141
Target Start/End: Original strand, 45746174 - 45746301
Alignment:
| Q |
14 |
gtttggtggttgtgtgttatataggtggagttctggctctgtttggtgccaacccttttgggctatctccttgaaattccatatgttatctatgctatta |
113 |
Q |
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| T |
45746174 |
gtttggtggtaatgtgttacataggtggagttctggctctgtttggtgctaaccctttttggctatctccctggaattctctatgctatctatgctatta |
45746273 |
T |
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| Q |
114 |
cctagtgttcaatttagcctttgtaagt |
141 |
Q |
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| T |
45746274 |
ccaagtgatcaatttagcttttgtaagt |
45746301 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 32 - 81
Target Start/End: Original strand, 45705374 - 45705423
Alignment:
| Q |
32 |
atataggtggagttctggctctgtttggtgccaacccttttgggctatct |
81 |
Q |
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| T |
45705374 |
atataggtggagttctggatctgtttggtgctcaccctttttggctatct |
45705423 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 67 - 143
Target Start/End: Complemental strand, 52742154 - 52742078
Alignment:
| Q |
67 |
ccttttgggctatctccttgaaattccatatgttatctatgctattacctagtgttcaatttagcctttgtaagttg |
143 |
Q |
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||||||||| ||||||| || |||||||||||||||||||||||||||| | | |||||||||||||||||||||| |
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| T |
52742154 |
ccttttgggttatctccctggaattccatatgttatctatgctattaccaatttctcaatttagcctttgtaagttg |
52742078 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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