View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8614_low_4 (Length: 264)
Name: NF8614_low_4
Description: NF8614
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8614_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 49; Significance: 4e-19; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 44 - 134
Target Start/End: Original strand, 39591704 - 39591791
Alignment:
| Q |
44 |
gaagattacgtggcagtgttgttgaagaaaaatttacaaacnnnnnnnncgatgggaaacagtgttgttattgttgttgtgttgttgttcc |
134 |
Q |
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| T |
39591704 |
gaagattacgtggcagtgttgatgaagaaaaatttacaaacaaaaaaaacgatgggaaacagtgttg---ttgttgttgtgttgttgttcc |
39591791 |
T |
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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 30
Target Start/End: Original strand, 39591643 - 39591672
Alignment:
| Q |
1 |
caattgattaattaaacatgaaaaatttac |
30 |
Q |
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| T |
39591643 |
caattgattaattaaacatgaaaaatttac |
39591672 |
T |
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