View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8614_low_5 (Length: 256)
Name: NF8614_low_5
Description: NF8614
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8614_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 185; Significance: 1e-100; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 11826430 - 11826668
Alignment:
| Q |
1 |
aatataagggtgaataataaggaaatcaatagtttgatccccaccctcaatataaaaactaacaatacaatactgacattttttatgccaaaatgtacaa |
100 |
Q |
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| T |
11826430 |
aatataagggtgaataataaggaaatcaatagtttgatccccaccctcaatataaaaactaacaatacaatactaacattttttatgccaaaatgtacaa |
11826529 |
T |
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| Q |
101 |
cagcaaaaaagatatcttggaagtagaaatatttcattgatctagctatgaaaattttaacatatataaagtaatcaacgacacgnnnnnnnnnnnnaca |
200 |
Q |
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| T |
11826530 |
cagcaaaaaagatatcttggaagtagaaatatttcattgatctagctatgaaaatttcaacatatataaagcaatcaacgacac--atatatatataaca |
11826627 |
T |
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| Q |
201 |
gcaaaataacaaagtgcactaattaatcatgtttcttaatg |
241 |
Q |
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| T |
11826628 |
gcaaaataacaaagtgcactaattaatcatgtttcttaatg |
11826668 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 120 - 179
Target Start/End: Original strand, 11840334 - 11840389
Alignment:
| Q |
120 |
gaagtagaaatatttcattgatctagctatgaaaattttaacatatataaagtaatcaac |
179 |
Q |
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| T |
11840334 |
gaagtagaaatatttcattgatcga----tgaaaatttcaacatatataaagcaatcaac |
11840389 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 32 - 68
Target Start/End: Complemental strand, 35040395 - 35040359
Alignment:
| Q |
32 |
gtttgatccccaccctcaatataaaaactaacaatac |
68 |
Q |
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| T |
35040395 |
gtttgatccccaccctcagcataaaaactaacaatac |
35040359 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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