View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8615_high_1 (Length: 554)
Name: NF8615_high_1
Description: NF8615
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8615_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 413; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 413; E-Value: 0
Query Start/End: Original strand, 92 - 544
Target Start/End: Original strand, 47707746 - 47708198
Alignment:
| Q |
92 |
cttgggcatgatgtttctcatgtgatgaaatctaaaagggtgttgcacaagacaaagaggttgttatttgattgtgtgagagaacttgcaaaaagtcttc |
191 |
Q |
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| T |
47707746 |
cttgggcatgatgtttctcatgtgatgaaatctaaaagggtgttgcacaagacaaagaggttgttatttgattgtgtgagagaacttacaaaaaatcttc |
47707845 |
T |
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| Q |
192 |
cagataaagattgtaagcaattcatgggtgccgaaaagttggggaagatgttatgggagaggacaaaagaatggagcgaaagaggtggaaattatgagag |
291 |
Q |
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| T |
47707846 |
cagaaaaagattgtaagcaattcatgggtgccgaaaagttggggaagatgttatgggagaggacaaaagaatggagtgaaagaggtggaaattatgagag |
47707945 |
T |
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| Q |
292 |
aaatctaagtaacttgctgaatttggattacttggattcaattaatgaatggagtgaatttaagactgaggtgaaagatgttagtattgagattgctgat |
391 |
Q |
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| T |
47707946 |
aaatctaagtaacttgctgaatttggattacttggattcaattaatgaatggagtgaatttaagaccgaggtgaaagatgttagtattgagattgctgat |
47708045 |
T |
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| Q |
392 |
gcaattttggaatgtgtgatcagggatgaagtagtatcagatatcattgaaattttatcacgcaacaaaattaatttctgttgttgtaagtaatatctcc |
491 |
Q |
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| T |
47708046 |
gcaattttggaatgtgtgattagggatgaagtagtatcagatatcattgaaattttatcacacaacaaaattaatttctgttgttgtaagtaatatctca |
47708145 |
T |
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| Q |
492 |
tgtccataagccattgcttcttaaatgatgggttgcttgctctctctgcttct |
544 |
Q |
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| T |
47708146 |
tgtcaataagccattgcttcttaaatgatgggttgcttgctctctctacttct |
47708198 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 20 - 94
Target Start/End: Original strand, 47707620 - 47707694
Alignment:
| Q |
20 |
tgtgtttgcggcatggttgtgccgaagaaattcaccgaggaatctctactatcagctgctctatttagttcactt |
94 |
Q |
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| T |
47707620 |
tgtgtttgcggcgtggttgtgccgaagaaattcaccgaggaatctctactatcagctgctctatttagttcactt |
47707694 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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