View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8615_high_2 (Length: 499)

Name: NF8615_high_2
Description: NF8615
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8615_high_2
NF8615_high_2
[»] chr2 (11 HSPs)
chr2 (236-495)||(32186699-32186955)
chr2 (1-135)||(33400990-33401124)
chr2 (236-331)||(32178099-32178194)
chr2 (263-308)||(41545610-41545655)
chr2 (186-231)||(12758548-12758593)
chr2 (4-77)||(18482614-18482687)
chr2 (186-238)||(4505676-4505728)
chr2 (185-217)||(7162695-7162727)
chr2 (267-303)||(19334189-19334225)
chr2 (263-307)||(19336926-19336970)
chr2 (186-230)||(27506992-27507036)
[»] chr4 (15 HSPs)
chr4 (1-116)||(49006256-49006374)
chr4 (263-340)||(51421935-51422012)
chr4 (263-308)||(1793667-1793712)
chr4 (186-217)||(35780573-35780604)
chr4 (186-229)||(45560721-45560764)
chr4 (186-216)||(54779460-54779490)
chr4 (263-300)||(20601692-20601729)
chr4 (186-223)||(25887301-25887338)
chr4 (186-223)||(29690950-29690987)
chr4 (186-223)||(48694722-48694759)
chr4 (263-303)||(3979125-3979165)
chr4 (263-303)||(8286644-8286684)
chr4 (171-227)||(36441298-36441353)
chr4 (263-303)||(37773488-37773528)
chr4 (186-226)||(55809883-55809923)
[»] chr5 (3 HSPs)
chr5 (155-225)||(33046367-33046437)
chr5 (186-237)||(39544257-39544308)
chr5 (94-135)||(33046263-33046304)
[»] chr3 (10 HSPs)
chr3 (186-235)||(32741098-32741147)
chr3 (265-340)||(33271910-33271985)
chr3 (186-231)||(33426354-33426399)
chr3 (263-303)||(38850326-38850366)
chr3 (186-230)||(50939485-50939529)
chr3 (263-303)||(54365012-54365052)
chr3 (263-300)||(30797862-30797899)
chr3 (262-303)||(49042141-49042182)
chr3 (263-303)||(48508440-48508480)
chr3 (263-303)||(48953456-48953496)
[»] chr8 (5 HSPs)
chr8 (265-303)||(32569747-32569785)
chr8 (186-230)||(10917199-10917243)
chr8 (186-223)||(15270142-15270179)
chr8 (186-223)||(45193875-45193912)
chr8 (186-230)||(42600589-42600633)
[»] chr7 (11 HSPs)
chr7 (265-338)||(24777168-24777241)
chr7 (186-231)||(29241546-29241591)
chr7 (186-231)||(36698760-36698805)
chr7 (186-238)||(18777035-18777087)
chr7 (263-303)||(44951360-44951400)
chr7 (186-237)||(10027616-10027667)
chr7 (262-305)||(44401162-44401205)
chr7 (271-305)||(1523856-1523890)
chr7 (186-223)||(9939442-9939479)
chr7 (184-216)||(38190501-38190533)
chr7 (263-303)||(40979965-40980005)
[»] chr6 (8 HSPs)
chr6 (184-231)||(609850-609897)
chr6 (186-229)||(23070906-23070949)
chr6 (263-301)||(7513029-7513067)
chr6 (186-220)||(20711969-20712003)
chr6 (263-303)||(5096039-5096079)
chr6 (189-229)||(12083660-12083700)
chr6 (263-303)||(12890780-12890820)
chr6 (263-303)||(30031461-30031501)
[»] chr1 (10 HSPs)
chr1 (186-229)||(3406329-3406372)
chr1 (186-229)||(3440448-3440491)
chr1 (186-217)||(5027991-5028022)
chr1 (186-229)||(27906965-27907008)
chr1 (265-303)||(5113950-5113988)
chr1 (186-230)||(13913733-13913777)
chr1 (263-303)||(39318334-39318374)
chr1 (186-230)||(40502041-40502085)
chr1 (263-303)||(44941813-44941853)
chr1 (263-303)||(52532653-52532693)
[»] scaffold0369 (1 HSPs)
scaffold0369 (186-223)||(14385-14422)
[»] scaffold0045 (1 HSPs)
scaffold0045 (265-293)||(86656-86684)
[»] scaffold0024 (1 HSPs)
scaffold0024 (263-303)||(82923-82963)


Alignment Details
Target: chr2 (Bit Score: 230; Significance: 1e-127; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 236 - 495
Target Start/End: Complemental strand, 32186955 - 32186699
Alignment:
Q  236 atagtagccaacgtggatccgtcactttttatgatagaacactatgacgtaatttgatttatgtagccaatcttatttaatacggtaaagcttggtcgtt 335  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  32186955 atagtagccaacgtggatccgtcactttttatgatagaacactataacgtaatttaatttatgtagccaatcttatttaatacggtaaagcttggtcgtt 32186856  T
Q  336 gttgtatcaatcaaggacaatctgcttctacctatataacaaggtaatatactaatactactagattagagtttgcagacggatcatgaaaaagggcgat 435  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||| ||||||||||||||||||||||||||| |||    
T  32186855 gttgtatcaatcaaggacaatctgcttctacctatataacaaggtaatatactaat---actagattacagtttgcagacggatcatgaaaaagggtgat 32186759  T
Q  436 tggaaaattcaaagacgcctactttccattttgatgaaagaaaggataatgatgtccatc 495  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32186758 tggaaaattcaaagacgcctactttccattttgatgaaagaaaggataatgatgtccatc 32186699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 111; E-Value: 8e-56
Query Start/End: Original strand, 1 - 135
Target Start/End: Original strand, 33400990 - 33401124
Alignment:
Q  1 gaactagaggatatatggaggtttgattggtggtggtgacgagtgtgtatggcggtgcacggctgagagatggaggttgggcggggacacgaggttgggg 100  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  33400990 gaactagaggatatatggaggtttgattggtggtggtgacgggtgtgtgtggcggtgcacggctgagagatggaggttgggcggggacacaaggttgggg 33401089  T
Q  101 agaattgagaataagagggttgaaataaagaaaca 135  Q
    |||| ||||||||||||| |||||| |||||||||    
T  33401090 agaactgagaataagaggtttgaaagaaagaaaca 33401124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 236 - 331
Target Start/End: Complemental strand, 32178194 - 32178099
Alignment:
Q  236 atagtagccaacgtggatccgtcactttttatgatagaacactatgacgtaatttgatttatgtagccaatcttatttaatacggtaaagcttggt 331  Q
    ||||||||||| ||| ||| ||||||||||||||||||| |||||||||||||||||| |||||||||||||| ||||||||  ||||||||||||    
T  32178194 atagtagccaatgtgaatctgtcactttttatgatagaatactatgacgtaatttgatctatgtagccaatctcatttaatatagtaaagcttggt 32178099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 263 - 308
Target Start/End: Original strand, 41545610 - 41545655
Alignment:
Q  263 tttatgatagaacactatgacgtaatttgatttatgtagccaatct 308  Q
    ||||||||||||||||||||| ||||||||||||| ||||| ||||    
T  41545610 tttatgatagaacactatgacttaatttgatttatttagccgatct 41545655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 186 - 231
Target Start/End: Complemental strand, 12758593 - 12758548
Alignment:
Q  186 gggaggcccagctcggttgagctgtttgcacctccccaaggacggc 231  Q
    ||||||||||||||  | |||||||||||||||||||| |||||||    
T  12758593 gggaggcccagctctatagagctgtttgcacctccccatggacggc 12758548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 4 - 77
Target Start/End: Original strand, 18482614 - 18482687
Alignment:
Q  4 ctagaggatatatggaggtttgattggtggtggtgacgagtgtgtatggcggtgcacggctgagagatggaggt 77  Q
    |||||||||| ||| ||||| |||| |||||||| |   || ||| ||||| ||||||||||||||||||||||    
T  18482614 ctagaggatagatgaaggttggattagtggtggttattggtatgtgtggcgttgcacggctgagagatggaggt 18482687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 186 - 238
Target Start/End: Complemental strand, 4505728 - 4505676
Alignment:
Q  186 gggaggcccagctcggttgagctgtttgcacctccccaaggacggctctgata 238  Q
    ||||||||||||||| |||||||||||||||| || || ||||| | ||||||    
T  4505728 gggaggcccagctcgtttgagctgtttgcaccccctcagggacgcccctgata 4505676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 185 - 217
Target Start/End: Complemental strand, 7162727 - 7162695
Alignment:
Q  185 tgggaggcccagctcggttgagctgtttgcacc 217  Q
    |||||||||||||||| ||||||||||||||||    
T  7162727 tgggaggcccagctcgtttgagctgtttgcacc 7162695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 267 - 303
Target Start/End: Complemental strand, 19334225 - 19334189
Alignment:
Q  267 tgatagaacactatgacgtaatttgatttatgtagcc 303  Q
    ||||||||||||||||||| |||||||| ||||||||    
T  19334225 tgatagaacactatgacgtcatttgattcatgtagcc 19334189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 263 - 307
Target Start/End: Complemental strand, 19336970 - 19336926
Alignment:
Q  263 tttatgatagaacactatgacgtaatttgatttatgtagccaatc 307  Q
    |||||||||||||| |||| |||||||||||  ||||||||||||    
T  19336970 tttatgatagaacattatggcgtaatttgatccatgtagccaatc 19336926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 186 - 230
Target Start/End: Original strand, 27506992 - 27507036
Alignment:
Q  186 gggaggcccagctcggttgagctgtttgcacctccccaaggacgg 230  Q
    |||||||||||||| ||||||||||||||||| || || ||||||    
T  27506992 gggaggcccagctctgttgagctgtttgcaccccctcagggacgg 27507036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 68; Significance: 4e-30; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 1 - 116
Target Start/End: Complemental strand, 49006374 - 49006256
Alignment:
Q  1 gaactagaggatatatggaggtttgattggtggtggtgacgagtgtgtatggcggtgcacggctga--gagatggaggttgggcggggacacgaggtt-g 97  Q
    |||||| |||||||||||||||||||||||||||||||||  |||||| |||||| ||||||||||  |||||||||||||||||||||| ||||||| |    
T  49006374 gaactacaggatatatggaggtttgattggtggtggtgactggtgtgtgtggcggcgcacggctgagagagatggaggttgggcggggacgcgaggttag 49006275  T
Q  98 gggagaattgagaataaga 116  Q
    ||||||| |||||| ||||    
T  49006274 gggagaactgagaagaaga 49006256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 263 - 340
Target Start/End: Original strand, 51421935 - 51422012
Alignment:
Q  263 tttatgatagaacactatgacgtaatttgatttatgtagccaatcttatttaatacggtaaagcttggtcgttgttgt 340  Q
    |||||||||||||| ||||||||||||||||  ||||||||||||| | ||| |  | ||||||||||| ||||||||    
T  51421935 tttatgatagaacattatgacgtaatttgatccatgtagccaatctcacttagtgggataaagcttggttgttgttgt 51422012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 263 - 308
Target Start/End: Original strand, 1793667 - 1793712
Alignment:
Q  263 tttatgatagaacactatgacgtaatttgatttatgtagccaatct 308  Q
    ||||||||||| |||||||||||||||||||| |||||||| ||||    
T  1793667 tttatgatagagcactatgacgtaatttgattcatgtagccgatct 1793712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 186 - 217
Target Start/End: Original strand, 35780573 - 35780604
Alignment:
Q  186 gggaggcccagctcggttgagctgtttgcacc 217  Q
    ||||||||||||||||||||||||||||||||    
T  35780573 gggaggcccagctcggttgagctgtttgcacc 35780604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 186 - 229
Target Start/End: Original strand, 45560721 - 45560764
Alignment:
Q  186 gggaggcccagctcggttgagctgtttgcacctccccaaggacg 229  Q
    ||||||||||||||| |||||||||||||||| || ||||||||    
T  45560721 gggaggcccagctcgtttgagctgtttgcaccccctcaaggacg 45560764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 186 - 216
Target Start/End: Complemental strand, 54779490 - 54779460
Alignment:
Q  186 gggaggcccagctcggttgagctgtttgcac 216  Q
    |||||||||||||||||||||||||||||||    
T  54779490 gggaggcccagctcggttgagctgtttgcac 54779460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 263 - 300
Target Start/End: Complemental strand, 20601729 - 20601692
Alignment:
Q  263 tttatgatagaacactatgacgtaatttgatttatgta 300  Q
    |||||||||||||| ||||||||||||||||| |||||    
T  20601729 tttatgatagaacattatgacgtaatttgattcatgta 20601692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 186 - 223
Target Start/End: Original strand, 25887301 - 25887338
Alignment:
Q  186 gggaggcccagctcggttgagctgtttgcacctcccca 223  Q
    |||||||||||||| || ||||||||||||||||||||    
T  25887301 gggaggcccagctctgtagagctgtttgcacctcccca 25887338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 186 - 223
Target Start/End: Original strand, 29690950 - 29690987
Alignment:
Q  186 gggaggcccagctcggttgagctgtttgcacctcccca 223  Q
    |||||||||||||| || ||||||||||||||||||||    
T  29690950 gggaggcccagctctgtagagctgtttgcacctcccca 29690987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 186 - 223
Target Start/End: Complemental strand, 48694759 - 48694722
Alignment:
Q  186 gggaggcccagctcggttgagctgtttgcacctcccca 223  Q
    |||||||||||||| || ||||||||||||||||||||    
T  48694759 gggaggcccagctctgtagagctgtttgcacctcccca 48694722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 263 - 303
Target Start/End: Original strand, 3979125 - 3979165
Alignment:
Q  263 tttatgatagaacactatgacgtaatttgatttatgtagcc 303  Q
    |||||||||||||| ||||||||||||||||  ||||||||    
T  3979125 tttatgatagaacattatgacgtaatttgatccatgtagcc 3979165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 263 - 303
Target Start/End: Original strand, 8286644 - 8286684
Alignment:
Q  263 tttatgatagaacactatgacgtaatttgatttatgtagcc 303  Q
    ||||||||||||||||||||||| |||||||  ||||||||    
T  8286644 tttatgatagaacactatgacgtcatttgatccatgtagcc 8286684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 171 - 227
Target Start/End: Original strand, 36441298 - 36441353
Alignment:
Q  171 gaggcccatgaacttgggaggcccagctcggttgagctgtttgcacctccccaagga 227  Q
    ||||||||| |  ||||||| ||||||||||||||||| |||||| |||||||||||    
T  36441298 gaggcccatcactttgggagacccagctcggttgagctctttgca-ctccccaagga 36441353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 263 - 303
Target Start/End: Complemental strand, 37773528 - 37773488
Alignment:
Q  263 tttatgatagaacactatgacgtaatttgatttatgtagcc 303  Q
    ||||||||||||||||||||| ||||||||| ||| |||||    
T  37773528 tttatgatagaacactatgacataatttgatctatatagcc 37773488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 186 - 226
Target Start/End: Complemental strand, 55809923 - 55809883
Alignment:
Q  186 gggaggcccagctcggttgagctgtttgcacctccccaagg 226  Q
    ||||||||||||||  | |||||||||||||||||||||||    
T  55809923 gggaggcccagctctatagagctgtttgcacctccccaagg 55809883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 55; Significance: 2e-22; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 155 - 225
Target Start/End: Original strand, 33046367 - 33046437
Alignment:
Q  155 ggactacaattgtttcgaggcccatgaacttgggaggcccagctcggttgagctgtttgcacctccccaag 225  Q
    ||||||||||  |||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33046367 ggactacaatcttttttaggcccatgaacttgggaggcccagctcggttgagctgtttgcacctccccaag 33046437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 186 - 237
Target Start/End: Complemental strand, 39544308 - 39544257
Alignment:
Q  186 gggaggcccagctcggttgagctgtttgcacctccccaaggacggctctgat 237  Q
    |||||||||||||| || |||||||||||||||||||| ||| ||| |||||    
T  39544308 gggaggcccagctcagtagagctgtttgcacctccccagggatggccctgat 39544257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 94 - 135
Target Start/End: Original strand, 33046263 - 33046304
Alignment:
Q  94 gttggggagaattgagaataagagggttgaaataaagaaaca 135  Q
    ||||||||||| ||||||||||| |||||||| |||||||||    
T  33046263 gttggggagaactgagaataagatggttgaaagaaagaaaca 33046304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 186 - 235
Target Start/End: Complemental strand, 32741147 - 32741098
Alignment:
Q  186 gggaggcccagctcggttgagctgtttgcacctccccaaggacggctctg 235  Q
    ||||||||||||||||| |||||||||||||||||||| |||||||||||    
T  32741147 gggaggcccagctcggtagagctgtttgcacctccccagggacggctctg 32741098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 265 - 340
Target Start/End: Complemental strand, 33271985 - 33271910
Alignment:
Q  265 tatgatagaacactatgacgtaatttgatttatgtagccaatcttatttaatacggtaaagcttggtcgttgttgt 340  Q
    ||||||||||||||||||||| ||||||| ||||||||||| |  | |||||| | |||||||| || ||||||||    
T  33271985 tatgatagaacactatgacgtcatttgatctatgtagccaaccccacttaataagataaagcttagttgttgttgt 33271910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 186 - 231
Target Start/End: Complemental strand, 33426399 - 33426354
Alignment:
Q  186 gggaggcccagctcggttgagctgtttgcacctccccaaggacggc 231  Q
    ||||||||||||||  |||||||||||||||||||||| |||||||    
T  33426399 gggaggcccagctccattgagctgtttgcacctccccatggacggc 33426354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 263 - 303
Target Start/End: Original strand, 38850326 - 38850366
Alignment:
Q  263 tttatgatagaacactatgacgtaatttgatttatgtagcc 303  Q
    |||||||||||||||||||||||||||||||  ||||||||    
T  38850326 tttatgatagaacactatgacgtaatttgatccatgtagcc 38850366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 186 - 230
Target Start/End: Original strand, 50939485 - 50939529
Alignment:
Q  186 gggaggcccagctcggttgagctgtttgcacctccccaaggacgg 230  Q
    |||||||||||||| |||||||||||||||||||| || ||||||    
T  50939485 gggaggcccagctctgttgagctgtttgcacctcctcagggacgg 50939529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 263 - 303
Target Start/End: Complemental strand, 54365052 - 54365012
Alignment:
Q  263 tttatgatagaacactatgacgtaatttgatttatgtagcc 303  Q
    |||||||||||||||||||||||||||||||  ||||||||    
T  54365052 tttatgatagaacactatgacgtaatttgatccatgtagcc 54365012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 263 - 300
Target Start/End: Complemental strand, 30797899 - 30797862
Alignment:
Q  263 tttatgatagaacactatgacgtaatttgatttatgta 300  Q
    |||||||||||||| |||||||||||||||| ||||||    
T  30797899 tttatgatagaacattatgacgtaatttgatctatgta 30797862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 262 - 303
Target Start/End: Original strand, 49042141 - 49042182
Alignment:
Q  262 ttttatgatagaacactatgacgtaatttgatttatgtagcc 303  Q
    |||||||||||||||||||| |||||||||||  ||||||||    
T  49042141 ttttatgatagaacactatggcgtaatttgatccatgtagcc 49042182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 263 - 303
Target Start/End: Original strand, 48508440 - 48508480
Alignment:
Q  263 tttatgatagaacactatgacgtaatttgatttatgtagcc 303  Q
    ||||||||||||||||||| |||||||||||  ||||||||    
T  48508440 tttatgatagaacactatggcgtaatttgatccatgtagcc 48508480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 263 - 303
Target Start/End: Complemental strand, 48953496 - 48953456
Alignment:
Q  263 tttatgatagaacactatgacgtaatttgatttatgtagcc 303  Q
    |||||||||||||||||||||||||||| ||  ||||||||    
T  48953496 tttatgatagaacactatgacgtaatttaatccatgtagcc 48953456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 265 - 303
Target Start/End: Complemental strand, 32569785 - 32569747
Alignment:
Q  265 tatgatagaacactatgacgtaatttgatttatgtagcc 303  Q
    ||||||||||||||||||||| |||||||||||||||||    
T  32569785 tatgatagaacactatgacgtcatttgatttatgtagcc 32569747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 186 - 230
Target Start/End: Complemental strand, 10917243 - 10917199
Alignment:
Q  186 gggaggcccagctcggttgagctgtttgcacctccccaaggacgg 230  Q
    |||||||||||||| ||||||||||||||||| || |||||||||    
T  10917243 gggaggcccagctctgttgagctgtttgcaccccctcaaggacgg 10917199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 186 - 223
Target Start/End: Original strand, 15270142 - 15270179
Alignment:
Q  186 gggaggcccagctcggttgagctgtttgcacctcccca 223  Q
    |||||||||||||| || ||||||||||||||||||||    
T  15270142 gggaggcccagctctgtagagctgtttgcacctcccca 15270179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 186 - 223
Target Start/End: Original strand, 45193875 - 45193912
Alignment:
Q  186 gggaggcccagctcggttgagctgtttgcacctcccca 223  Q
    |||||||||||||| || ||||||||||||||||||||    
T  45193875 gggaggcccagctctgtagagctgtttgcacctcccca 45193912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 186 - 230
Target Start/End: Complemental strand, 42600633 - 42600589
Alignment:
Q  186 gggaggcccagctcggttgagctgtttgcacctccccaaggacgg 230  Q
    |||||||||||||| ||||||||||||||||| || || ||||||    
T  42600633 gggaggcccagctctgttgagctgtttgcaccccctcagggacgg 42600589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.0000000007; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 265 - 338
Target Start/End: Original strand, 24777168 - 24777241
Alignment:
Q  265 tatgatagaacactatgacgtaatttgatttatgtagccaatcttatttaatacggtaaagcttggtcgttgtt 338  Q
    ||||||||||||||||||||| |||||||| |||||||| ||| || ||| |  | ||||||||||| ||||||    
T  24777168 tatgatagaacactatgacgtcatttgattcatgtagccgatcctacttagtgggataaagcttggttgttgtt 24777241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 186 - 231
Target Start/End: Original strand, 29241546 - 29241591
Alignment:
Q  186 gggaggcccagctcggttgagctgtttgcacctccccaaggacggc 231  Q
    |||||||||||||| || ||||||||||||||||||||||| ||||    
T  29241546 gggaggcccagctctgtagagctgtttgcacctccccaaggccggc 29241591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 186 - 231
Target Start/End: Original strand, 36698760 - 36698805
Alignment:
Q  186 gggaggcccagctcggttgagctgtttgcacctccccaaggacggc 231  Q
    |||||||||||||| || ||||||||||||||||||||||| ||||    
T  36698760 gggaggcccagctctgtagagctgtttgcacctccccaaggccggc 36698805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 186 - 238
Target Start/End: Original strand, 18777035 - 18777087
Alignment:
Q  186 gggaggcccagctcggttgagctgtttgcacctccccaaggacggctctgata 238  Q
    ||||||||||||||| ||||||||||||||||||| || ||||| | ||||||    
T  18777035 gggaggcccagctcgtttgagctgtttgcacctcctcagggacgcccctgata 18777087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 263 - 303
Target Start/End: Original strand, 44951360 - 44951400
Alignment:
Q  263 tttatgatagaacactatgacgtaatttgatttatgtagcc 303  Q
    |||||||||||||||||||||||||||||||  ||||||||    
T  44951360 tttatgatagaacactatgacgtaatttgatccatgtagcc 44951400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 186 - 237
Target Start/End: Complemental strand, 10027667 - 10027616
Alignment:
Q  186 gggaggcccagctcggttgagctgtttgcacctccccaaggacggctctgat 237  Q
    |||||||||||||| || |||||||||||||||||||| || |||| |||||    
T  10027667 gggaggcccagctctgtagagctgtttgcacctccccagggccggccctgat 10027616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 262 - 305
Target Start/End: Complemental strand, 44401205 - 44401162
Alignment:
Q  262 ttttatgatagaacactatgacgtaatttgatttatgtagccaa 305  Q
    ||||||||||||||| ||||||||||||||||  ||||||||||    
T  44401205 ttttatgatagaacattatgacgtaatttgatccatgtagccaa 44401162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 271 - 305
Target Start/End: Original strand, 1523856 - 1523890
Alignment:
Q  271 agaacactatgacgtaatttgatttatgtagccaa 305  Q
    |||||||||||||||||||||||| ||||||||||    
T  1523856 agaacactatgacgtaatttgattcatgtagccaa 1523890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 186 - 223
Target Start/End: Original strand, 9939442 - 9939479
Alignment:
Q  186 gggaggcccagctcggttgagctgtttgcacctcccca 223  Q
    |||||||||||||| || ||||||||||||||||||||    
T  9939442 gggaggcccagctctgtagagctgtttgcacctcccca 9939479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 184 - 216
Target Start/End: Original strand, 38190501 - 38190533
Alignment:
Q  184 ttgggaggcccagctcggttgagctgtttgcac 216  Q
    ||||||||||||||||||||||||| |||||||    
T  38190501 ttgggaggcccagctcggttgagctctttgcac 38190533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 263 - 303
Target Start/End: Complemental strand, 40980005 - 40979965
Alignment:
Q  263 tttatgatagaacactatgacgtaatttgatttatgtagcc 303  Q
    ||||||||||||||||||| |||||||||||  ||||||||    
T  40980005 tttatgatagaacactatggcgtaatttgatccatgtagcc 40979965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 184 - 231
Target Start/End: Original strand, 609850 - 609897
Alignment:
Q  184 ttgggaggcccagctcggttgagctgtttgcacctccccaaggacggc 231  Q
    ||||||||||||||||||||||||| ||||||| |||| ||| |||||    
T  609850 ttgggaggcccagctcggttgagctctttgcacttcccaaagaacggc 609897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 186 - 229
Target Start/End: Original strand, 23070906 - 23070949
Alignment:
Q  186 gggaggcccagctcggttgagctgtttgcacctccccaaggacg 229  Q
    ||||||||||||||| |||||||||||||||| || ||||||||    
T  23070906 gggaggcccagctcgtttgagctgtttgcaccccctcaaggacg 23070949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 263 - 301
Target Start/End: Complemental strand, 7513067 - 7513029
Alignment:
Q  263 tttatgatagaacactatgacgtaatttgatttatgtag 301  Q
    |||||||||||||| |||||||||||||||| |||||||    
T  7513067 tttatgatagaacattatgacgtaatttgatctatgtag 7513029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 186 - 220
Target Start/End: Original strand, 20711969 - 20712003
Alignment:
Q  186 gggaggcccagctcggttgagctgtttgcacctcc 220  Q
    |||||||||||||| ||||||||||||||||||||    
T  20711969 gggaggcccagctctgttgagctgtttgcacctcc 20712003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 263 - 303
Target Start/End: Original strand, 5096039 - 5096079
Alignment:
Q  263 tttatgatagaacactatgacgtaatttgatttatgtagcc 303  Q
    |||||||||||||| |||| ||||||||||| |||||||||    
T  5096039 tttatgatagaacattatggcgtaatttgatctatgtagcc 5096079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 189 - 229
Target Start/End: Original strand, 12083660 - 12083700
Alignment:
Q  189 aggcccagctcggttgagctgtttgcacctccccaaggacg 229  Q
    |||||||||||| |||||||||||||||| || ||||||||    
T  12083660 aggcccagctcgtttgagctgtttgcaccccctcaaggacg 12083700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 263 - 303
Target Start/End: Original strand, 12890780 - 12890820
Alignment:
Q  263 tttatgatagaacactatgacgtaatttgatttatgtagcc 303  Q
    ||||||||||||||||||| |||||||||||  ||||||||    
T  12890780 tttatgatagaacactatggcgtaatttgatccatgtagcc 12890820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 263 - 303
Target Start/End: Original strand, 30031461 - 30031501
Alignment:
Q  263 tttatgatagaacactatgacgtaatttgatttatgtagcc 303  Q
    ||||||||||||||||||| |||||||||||  ||||||||    
T  30031461 tttatgatagaacactatggcgtaatttgatccatgtagcc 30031501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 186 - 229
Target Start/End: Complemental strand, 3406372 - 3406329
Alignment:
Q  186 gggaggcccagctcggttgagctgtttgcacctccccaaggacg 229  Q
    ||||||||||||||| |||||||||||||||| || ||||||||    
T  3406372 gggaggcccagctcgtttgagctgtttgcaccccctcaaggacg 3406329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 186 - 229
Target Start/End: Original strand, 3440448 - 3440491
Alignment:
Q  186 gggaggcccagctcggttgagctgtttgcacctccccaaggacg 229  Q
    ||||||||||||||| |||||||||||||||| || ||||||||    
T  3440448 gggaggcccagctcgtttgagctgtttgcaccccctcaaggacg 3440491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 186 - 217
Target Start/End: Original strand, 5027991 - 5028022
Alignment:
Q  186 gggaggcccagctcggttgagctgtttgcacc 217  Q
    ||||||||||||||||||||||||||||||||    
T  5027991 gggaggcccagctcggttgagctgtttgcacc 5028022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 186 - 229
Target Start/End: Original strand, 27906965 - 27907008
Alignment:
Q  186 gggaggcccagctcggttgagctgtttgcacctccccaaggacg 229  Q
    ||||||||||||||| |||||||||||||||| || ||||||||    
T  27906965 gggaggcccagctcgtttgagctgtttgcaccccctcaaggacg 27907008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 265 - 303
Target Start/End: Original strand, 5113950 - 5113988
Alignment:
Q  265 tatgatagaacactatgacgtaatttgatttatgtagcc 303  Q
    ||||||||||||||||||||| |||||||| ||||||||    
T  5113950 tatgatagaacactatgacgtcatttgattcatgtagcc 5113988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 186 - 230
Target Start/End: Original strand, 13913733 - 13913777
Alignment:
Q  186 gggaggcccagctcggttgagctgtttgcacctccccaaggacgg 230  Q
    |||||||||||||| ||||||||||||||||| || || ||||||    
T  13913733 gggaggcccagctctgttgagctgtttgcaccccctcagggacgg 13913777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 263 - 303
Target Start/End: Original strand, 39318334 - 39318374
Alignment:
Q  263 tttatgatagaacactatgacgtaatttgatttatgtagcc 303  Q
    ||||||||||||||||||| |||||||||||  ||||||||    
T  39318334 tttatgatagaacactatggcgtaatttgatccatgtagcc 39318374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 186 - 230
Target Start/End: Original strand, 40502041 - 40502085
Alignment:
Q  186 gggaggcccagctcggttgagctgtttgcacctccccaaggacgg 230  Q
    |||||||||||||| ||||||||||||||||| || || ||||||    
T  40502041 gggaggcccagctctgttgagctgtttgcaccccctcagggacgg 40502085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 263 - 303
Target Start/End: Complemental strand, 44941853 - 44941813
Alignment:
Q  263 tttatgatagaacactatgacgtaatttgatttatgtagcc 303  Q
    ||||||||||||||||||| |||||||||||  ||||||||    
T  44941853 tttatgatagaacactatggcgtaatttgatccatgtagcc 44941813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 263 - 303
Target Start/End: Complemental strand, 52532693 - 52532653
Alignment:
Q  263 tttatgatagaacactatgacgtaatttgatttatgtagcc 303  Q
    |||||||||||||| |||| |||||||||||| ||||||||    
T  52532693 tttatgatagaacattatggcgtaatttgattcatgtagcc 52532653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0369 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0369
Description:

Target: scaffold0369; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 186 - 223
Target Start/End: Complemental strand, 14422 - 14385
Alignment:
Q  186 gggaggcccagctcggttgagctgtttgcacctcccca 223  Q
    |||||||||||||| || ||||||||||||||||||||    
T  14422 gggaggcccagctctgtagagctgtttgcacctcccca 14385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 265 - 293
Target Start/End: Complemental strand, 86684 - 86656
Alignment:
Q  265 tatgatagaacactatgacgtaatttgat 293  Q
    |||||||||||||||||||||||||||||    
T  86684 tatgatagaacactatgacgtaatttgat 86656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 263 - 303
Target Start/End: Original strand, 82923 - 82963
Alignment:
Q  263 tttatgatagaacactatgacgtaatttgatttatgtagcc 303  Q
    ||||||||||||||||||||||| |||||||  ||||||||    
T  82923 tttatgatagaacactatgacgtcatttgatccatgtagcc 82963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University