View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8615_high_4 (Length: 295)
Name: NF8615_high_4
Description: NF8615
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8615_high_4 |
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Alignment Details
Target: chr2 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 277
Target Start/End: Complemental strand, 39300150 - 39299874
Alignment:
| Q |
1 |
tcaagagagactcatgaacttggttcaaatgtgaagcagagtgatagggatcatcatcatgctgctgctaccaaccttggacacaaacaaggttttcagt |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| ||||||||||||| |
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| T |
39300150 |
tcaagagagactcatgaacttggttcaaatgtgaagcagagtgatagggatcatcatcatgctgctgctacgaaccttggtcacaagcaaggttttcagt |
39300051 |
T |
|
| Q |
101 |
ctcactctgatcaaaatgtgaaacagagtgagagggatcgtcatcatgctacaaatgtagttggacacagacaaggtgcagaaggcatgaaagaaagagg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39300050 |
ctcactctgatcaaaatgtgaaacagagtgagagggatcgtcatcatgctacaaatgtagttggacacagacaaggtgcagaaggcatgaaagaaagagg |
39299951 |
T |
|
| Q |
201 |
tgaaggtttgggagatattggtggaagaggannnnnnnnnnnnnnccatgaacttggttcaaactttcagtctcttc |
277 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
39299950 |
tgaaggtttgggagatattggtggaagaggaagagaaagagagagccatgaacttggttcaaactttcagtctcttc |
39299874 |
T |
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