View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8615_low_4 (Length: 435)

Name: NF8615_low_4
Description: NF8615
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8615_low_4
NF8615_low_4
[»] scaffold0043 (1 HSPs)
scaffold0043 (1-417)||(94515-94931)
[»] scaffold0611 (1 HSPs)
scaffold0611 (1-417)||(6369-6782)
[»] scaffold0873 (1 HSPs)
scaffold0873 (1-415)||(117-531)
[»] chr4 (4 HSPs)
chr4 (1-418)||(17986518-17986935)
chr4 (1-415)||(17159261-17159674)
chr4 (1-161)||(6700643-6700803)
chr4 (228-380)||(6700406-6700552)
[»] scaffold0343 (1 HSPs)
scaffold0343 (1-418)||(17656-18076)
[»] chr1 (1 HSPs)
chr1 (1-418)||(21456532-21456952)
[»] chr8 (8 HSPs)
chr8 (1-415)||(21459110-21459512)
chr8 (228-415)||(21989892-21990073)
chr8 (1-161)||(21989641-21989801)
chr8 (1-161)||(9326881-9327041)
chr8 (1-161)||(21204727-21204887)
chr8 (61-161)||(21332212-21332312)
chr8 (228-380)||(21204978-21205124)
chr8 (228-380)||(21331975-21332121)
[»] chr2 (5 HSPs)
chr2 (1-415)||(45022822-45023224)
chr2 (1-185)||(9505508-9505692)
chr2 (228-407)||(18659339-18659512)
chr2 (1-185)||(18659579-18659763)
chr2 (228-380)||(9505759-9505905)
[»] chr6 (8 HSPs)
chr6 (1-415)||(24923623-24924019)
chr6 (228-415)||(31365184-31365365)
chr6 (228-415)||(16906317-16906498)
chr6 (228-415)||(18167611-18167792)
chr6 (1-154)||(18199558-18199711)
chr6 (1-150)||(18167822-18167971)
chr6 (1-161)||(31365456-31365616)
chr6 (1-161)||(16906589-16906749)
[»] chr3 (7 HSPs)
chr3 (1-415)||(6430799-6431195)
chr3 (228-415)||(8981305-8981486)
chr3 (228-415)||(16409222-16409403)
chr3 (228-407)||(9545318-9545491)
chr3 (1-185)||(9545558-9545742)
chr3 (61-185)||(16409470-16409594)
chr3 (1-161)||(8981577-8981737)
[»] chr5 (9 HSPs)
chr5 (147-415)||(19383642-19383910)
chr5 (228-415)||(26194109-26194290)
chr5 (256-415)||(19380734-19380893)
chr5 (228-415)||(18388131-18388312)
chr5 (1-81)||(19383496-19383576)
chr5 (228-407)||(33947477-33947650)
chr5 (1-150)||(18388342-18388491)
chr5 (1-161)||(26193858-26194018)
chr5 (1-161)||(33947741-33947901)
[»] scaffold0549 (1 HSPs)
scaffold0549 (252-418)||(11079-11245)
[»] chr7 (18 HSPs)
chr7 (228-415)||(32106821-32107002)
chr7 (228-415)||(46505508-46505689)
chr7 (228-415)||(16133947-16134128)
chr7 (1-185)||(5383634-5383818)
chr7 (228-407)||(8509186-8509359)
chr7 (1-185)||(8509426-8509610)
chr7 (1-185)||(16133696-16133880)
chr7 (1-185)||(26350018-26350202)
chr7 (1-185)||(46505747-46505931)
chr7 (246-407)||(44905516-44905671)
chr7 (228-407)||(5383885-5384058)
chr7 (228-407)||(26350269-26350442)
chr7 (1-161)||(6542901-6543061)
chr7 (1-185)||(44905756-44905940)
chr7 (311-415)||(9537097-9537202)
chr7 (61-141)||(32107113-32107193)
chr7 (246-380)||(6542664-6542792)
chr7 (8-136)||(9536894-9537021)
[»] scaffold0277 (2 HSPs)
scaffold0277 (30-185)||(21048-21203)
scaffold0277 (228-415)||(21270-21451)
[»] scaffold0005 (2 HSPs)
scaffold0005 (61-183)||(311733-311855)
scaffold0005 (309-415)||(311999-312105)
[»] scaffold0254 (2 HSPs)
scaffold0254 (1-161)||(9734-9894)
scaffold0254 (228-380)||(9985-10131)
[»] scaffold0213 (1 HSPs)
scaffold0213 (231-295)||(20634-20698)


Alignment Details
Target: scaffold0043 (Bit Score: 345; Significance: 0; HSPs: 1)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 1 - 417
Target Start/End: Original strand, 94515 - 94931
Alignment:
Q  1 agggcaaagatcctgaggccagaggcgctggatctgctgacagctgaccaccttgaaggggttcatttgaagcattttgatcatcaagctcttgatcatc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||    
T  94515 agggcaaagatcctgaggccagaggcgctggatctgctgacagctgaccaccttgaaggggttcatttgaagcgtgttgatcatcaagctcttgatcatc 94614  T
Q  101 ttgattagccatgacttgaacatcttcaacattctgagcttcagacacttcaacgttctgagcagcagtggcttcaacattctgagctgcagatgtttcc 200  Q
    |||||||||||||| |||||||||||||||||||||||||| ||||||||||||||| ||||||||||||| ||||||||||||||||||| ||||||||    
T  94615 ttgattagccatgatttgaacatcttcaacattctgagctttagacacttcaacgttatgagcagcagtggtttcaacattctgagctgcaaatgtttcc 94714  T
Q  201 tgaacaacctgagctgtttctttgtcttcttgaaacacttcattgttgaagtcagtgttgatgtcttcaacattcagatcaaacctagttgagaaatcca 300  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||    
T  94715 tgaacaacctgagctgtttctttgtcttcttgagacacttcattgttgaagtcagtgttgatgtcttcaacattcagatcaaaccctgttgagaaatcca 94814  T
Q  301 tttgttcttcttgaacttcttcttcaatactcatatttgaagccaagagttcaaccacctcttgagtgtcttcatcaacattttgagtattaatctcagt 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||| |||||| ||||||| |  ||||||    
T  94815 tttgttcttcttgaacttcttcttcaatactcatatttgaagccaagagttcagccacctcttgagtgtcatcattaacattctgagtatcatactcagt 94914  T
Q  401 attttcttcaactctct 417  Q
    ||||||||||| |||||    
T  94915 attttcttcaagtctct 94931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0611 (Bit Score: 267; Significance: 1e-149; HSPs: 1)
Name: scaffold0611
Description:

Target: scaffold0611; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 1 - 417
Target Start/End: Complemental strand, 6782 - 6369
Alignment:
Q  1 agggcaaagatcctgaggccagaggcgctggatctgctgacagctgaccaccttgaaggggttcatttgaagcattttgatcatcaagctcttgatcatc 100  Q
    ||||||||||||||||||||||||||| ||||||||||||||| ||  || |||| | ||||||||||||||| | |||||||| ||||||||||| |||    
T  6782 agggcaaagatcctgaggccagaggcggtggatctgctgacagttgttcatcttggaagggttcatttgaagcgtgttgatcattaagctcttgattatc 6683  T
Q  101 ttgattagccatgacttgaacatcttcaacattctgagcttcagacacttcaacgttctgagcagcagtggcttcaacattctgagctgcagatgtttcc 200  Q
    |||||||||||||||||||||||||||||||||||| ||| |||||| |||||||| ||||||  || |||||||||||||||| | |||||||||||||    
T  6682 ttgattagccatgacttgaacatcttcaacattctgggctgcagacatttcaacgtcctgagctccattggcttcaacattctgtgttgcagatgtttcc 6583  T
Q  201 tgaacaacctgagctgtttctttgtcttcttgaaacacttcattgttgaagtcagtgttgatgtcttcaacattcagatcaaacctagttgagaaatcca 300  Q
    |||||||  ||||||||||||||||||||| |||||||||||   ||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  6582 tgaacaatttgagctgtttctttgtcttctagaaacacttca---ttgaagtcagtgttgatgtcttcaacattcagatcaaaccttgttgagaaatcca 6486  T
Q  301 tttgttcttcttgaacttcttcttcaatactcatatttgaagccaagagttcaaccacctcttgagtgtcttcatcaacattttgagtattaatctcagt 400  Q
    ||||||||||||||||| ||||||||||||||||||||||| |||||| |||| ||| |||||||||||| ||||||||||| |||| || || ||||||    
T  6485 tttgttcttcttgaactgcttcttcaatactcatatttgaaaccaagaattcagccatctcttgagtgtcatcatcaacattctgagcatcaaactcagt 6386  T
Q  401 attttcttcaactctct 417  Q
    |||||||||||||||||    
T  6385 attttcttcaactctct 6369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0873 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: scaffold0873
Description:

Target: scaffold0873; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 415
Target Start/End: Original strand, 117 - 531
Alignment:
Q  1 agggcaaagatcctgaggccagaggcgctggatctgctgacagctgaccaccttgaaggggttcatttgaagcattttgatcatcaagctcttgatcatc 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||| |||||||||||   ||||| ||||    
T  117 agggcaaagatcctgaggccagaggcgctggatctgctgacagctggccactttgaaggggttcatttgaagcatgttgatcatcaaatgcttgaccatc 216  T
Q  101 ttgattagccatgacttgaacatcttcaacattctgagcttcagacacttcaacgttctgagcagcagtggcttcaacattctgagctgcagatgtttcc 200  Q
    |||||||||||| |||||||||||||||||||||||||||| ||| |||||||| |||||||  | ||   ||||||||||||||||| ||| |||||      
T  217 ttgattagccataacttgaacatcttcaacattctgagctttagagacttcaacattctgagttggaggaacttcaacattctgagcttcagttgtttta 316  T
Q  201 tgaacaacctgagctgtttctttgtcttcttgaaacacttcattgttgaagtcagtgttgatgtcttcaacattcagatcaaacctagttgagaaatcca 300  Q
    ||||||  ||||||||||||||   | |||||||||||||||||||||||||||||||||   ||||||||||||||||||| || ||||||||||||||    
T  317 tgaacatactgagctgtttcttgaccatcttgaaacacttcattgttgaagtcagtgttggaatcttcaacattcagatcaatcccagttgagaaatcca 416  T
Q  301 tttgttcttcttgaacttcttcttcaatactcatatttgaagccaagagttcaaccacctcttgagtgtcttcatcaacattttgagtattaatctcagt 400  Q
    ||||||| |||||||| |||||||||||| |||| |||||||||||||| ||| |||| || ||||| |||||||||||||| ||||| | || ||||||    
T  417 tttgttcatcttgaacatcttcttcaatattcatgtttgaagccaagagctcagccacttcctgagtttcttcatcaacattctgagtgtgaaactcagt 516  T
Q  401 attttcttcaactct 415  Q
    |||||||||||||||    
T  517 attttcttcaactct 531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 234; Significance: 1e-129; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 1 - 418
Target Start/End: Original strand, 17986518 - 17986935
Alignment:
Q  1 agggcaaagatcctgaggccagaggcgctggatctgctgacagctgaccaccttgaaggggttcatttgaagcattttgatcatcaagctcttgatcatc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||  ||||||||||   ||||||||||    
T  17986518 agggcaaagatcctgaggccagaggcgctggatctgctgacagctgaccactttgaaggggttcatttgaagcatgctgatcatcaaatgcttgatcatc 17986617  T
Q  101 ttgattagccatgacttgaacatcttcaacattctgagcttcagacacttcaacgttctgagcagcagtggcttcaacattctgagctgcagatgtttcc 200  Q
    |||||||||||| |||||||| ||||||||||||||||||||||| |||||||| |||||||  | ||   ||||||||||||||||| ||| ||||| |    
T  17986618 ttgattagccataacttgaacttcttcaacattctgagcttcagagacttcaacattctgagttggaggaacttcaacattctgagcttcagttgttttc 17986717  T
Q  201 tgaacaacctgagctgtttctttgtcttcttgaaacacttcattgttgaagtcagtgttgatgtcttcaacattcagatcaaacctagttgagaaatcca 300  Q
    ||||||  |||||||||||||| | | ||||||||||||||||||||||||||||||||||| ||||||||||||||||||| || ||||||||||||||    
T  17986718 tgaacatactgagctgtttcttggccatcttgaaacacttcattgttgaagtcagtgttgatatcttcaacattcagatcaatcccagttgagaaatcca 17986817  T
Q  301 tttgttcttcttgaacttcttcttcaatactcatatttgaagccaagagttcaaccacctcttgagtgtcttcatcaacattttgagtattaatctcagt 400  Q
    | || ||  ||||||||||||||||||||||||| ||||| ||||  | |||| | |||||||||||  | ||||||||| | |||| || || ||||||    
T  17986818 tgtgctcaacttgaacttcttcttcaatactcatgtttgaggccagtaattcagctacctcttgagttgcatcatcaacaatctgagcatcaaactcagt 17986917  T
Q  401 attttcttcaactctctg 418  Q
    ||||||||||||||||||    
T  17986918 attttcttcaactctctg 17986935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 1 - 415
Target Start/End: Complemental strand, 17159674 - 17159261
Alignment:
Q  1 agggcaaagatcctgaggccagaggcgctggatctgctgacagctgaccaccttgaaggggttcatttgaagcattttgatcatcaagctcttgatcatc 100  Q
    |||||||||||||||| |||| || |  |||||||| ||| | ||| ||||||||||| ||||||||||| ||||| |||||||||| | ||||| |||     
T  17159674 agggcaaagatcctgaagccaaagacattggatctgttgataactggccaccttgaagaggttcatttgatgcattctgatcatcaaacacttgaccatt 17159575  T
Q  101 ttgattagccatgacttgaacatcttcaacattctgagcttcagacacttcaacgttctgagcagcagtggcttcaacattctgagctgcagatgtttcc 200  Q
     ||||| | |||| |   || |||||||||||| |||||  ||||  || ||||||||||||||| ||   |||| |||||||| |||  || |||||||    
T  17159574 ctgattggtcatgcccaaaatatcttcaacattttgagcagcagaagctgcaacgttctgagcaggagaaacttccacattctgtgcttaagttgtttcc 17159475  T
Q  201 tgaacaacctgagctgtttctttgtcttcttgaaacacttcattgttgaagtcagtgttgatgtcttcaacattcagatcaaacctagttgagaaatcca 300  Q
    ||||||  |||| |||||||||   | |||||||||||||||||||| ||||||||||| || ||||||| ||| ||||||| || ||||||||| ||||    
T  17159474 tgaacatactga-ctgtttcttgaccatcttgaaacacttcattgttaaagtcagtgttaatatcttcaatattgagatcaatcccagttgagaactcca 17159376  T
Q  301 tttgttcttcttgaacttcttcttcaatactcatatttgaagccaagagttcaaccacctcttgagtgtcttcatcaacattttgagtattaatctcagt 400  Q
    | ||||   ||||||| ||||| ||||||  ||| |||||||| ||||| ||| |||| || || || |||||||||||||| |||||||   |||||||    
T  17159375 tatgtttaacttgaacatcttcatcaataaacatgtttgaagctaagagctcagccacttcctgggtatcttcatcaacattctgagtatccttctcagt 17159276  T
Q  401 attttcttcaactct 415  Q
    |||||||||||||||    
T  17159275 attttcttcaactct 17159261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 1 - 161
Target Start/End: Complemental strand, 6700803 - 6700643
Alignment:
Q  1 agggcaaagatcctgaggccagaggcgctggatctgctgacagctgaccaccttgaaggggttcatttgaagcattttgatcatcaagctcttgatcatc 100  Q
    |||||| ||||||||| |||| ||||   |||||  |||||||||| ||| || || |  |||||||||| ||||  |||||||||||||||||||  ||    
T  6700803 agggcagagatcctgatgccaaaggcatgggatcaactgacagctggccatctggaggaagttcatttgaggcatgctgatcatcaagctcttgattgtc 6700704  T
Q  101 ttgattagccatgacttgaacatcttcaacattctgagcttcagacacttcaacgttctga 161  Q
    ||||| ||||||||| |||| ||||||| ||||||| |||||||  ||| |||| ||||||    
T  6700703 ttgatcagccatgacatgaatatcttcatcattctgggcttcagttactgcaacattctga 6700643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 228 - 380
Target Start/End: Complemental strand, 6700552 - 6700406
Alignment:
Q  228 tcttgaaacacttcattgttgaagtcagtgttgatgtcttcaacattcagatcaaacctagttgagaaatccatttgttcttcttgaacttcttcttcaa 327  Q
    ||||||||||  ||| | ||||||||| ||||||| ||||||| ||| |||||||| | ||||||||| ||||      | |||||| ||||||||||||    
T  6700552 tcttgaaacaactcactattgaagtcaatgttgatatcttcaatattgagatcaaatccagttgagaactcca------catcttgagcttcttcttcaa 6700459  T
Q  328 tactcatatttgaagccaagagttcaaccacctcttgagtgtcttcatcaaca 380  Q
    |  ||||||||||||| ||||| ||| |||| || ||||| ||| ||||||||    
T  6700458 tgttcatatttgaagctaagagctcagccacttcctgagtttctccatcaaca 6700406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0343 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: scaffold0343
Description:

Target: scaffold0343; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 418
Target Start/End: Original strand, 17656 - 18076
Alignment:
Q  1 agggcaaagatcctgaggccagaggcgctggatctgctgacagctgaccaccttgaaggggttcatttgaagcattttgatcatcaagctcttgatcatc 100  Q
    |||||||||||||| |||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||  ||||||||||   ||||| ||||    
T  17656 agggcaaagatcctaaggccagaggcgctagatctgctgacagctgaccactttgaaggggttcatttgaagcatgatgatcatcaaatgcttgaacatc 17755  T
Q  101 ttgattagccatgacttgaacatcttcaacattctgagcttcagacacttcaacgttctgagcagcagtggcttcaacattctgagctgcagatgtttcc 200  Q
    |||||||||||| |||||||||||||||||||||||||||||||| |||||||| |||||||  | ||   ||||||||||||||||| ||| ||||| |    
T  17756 ttgattagccataacttgaacatcttcaacattctgagcttcagagacttcaacattctgagttggaggaacttcaacattctgagcttcagttgttttc 17855  T
Q  201 tgaacaacctgagctgtttctttgtcttcttgaaacacttcattgttgaagtcagtgttgatgtcttcaacattcagatcaaacctagttgagaaatcca 300  Q
    ||||||  ||||| |||||||| | | ||||||||||||| ||||||||||||||||||||| ||||||||||| ||||||| || ||||||||||||||    
T  17856 tgaacatactgagatgtttcttggccatcttgaaacacttaattgttgaagtcagtgttgatatcttcaacatttagatcaatcccagttgagaaatcca 17955  T
Q  301 tttgttcttcttgaacttcttct---tcaatactcatatttgaagccaagagttcaaccacctcttgagtgtcttcatcaacattttgagtattaatctc 397  Q
    | |||||  ||||||||||||||   ||||||||||| ||||| || |  | |||| | |||||||||||    ||||||||| | |||| || || |||    
T  17956 tgtgttcaacttgaacttcttcttcatcaatactcatgtttgaggctagtaattcagctacctcttgagttgtatcatcaacaatctgagcatcaaactc 18055  T
Q  398 agtattttcttcaactctctg 418  Q
    |||||||||||||||||||||    
T  18056 agtattttcttcaactctctg 18076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 418
Target Start/End: Complemental strand, 21456952 - 21456532
Alignment:
Q  1 agggcaaagatcctgaggccagaggcgctggatctgctgacagctgaccaccttgaaggggttcatttgaagcattttgatcatcaagctcttgatcatc 100  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||  ||||||||||   ||||||||||    
T  21456952 agggcaaagatcctgaggccagaggcgctggatctgctgatagctgaccactttgaaggggttcatttgaagcatgctgatcatcaaatgcttgatcatc 21456853  T
Q  101 ttgattagccatgacttgaacatcttcaacattctgagcttcagacacttcaacgttctgagcagcagtggcttcaacattctgagctgcagatgtttcc 200  Q
    |||||||||||| |||||||| ||||||||||||||||||||||| |||||||| |||||||  | ||   ||||||||||||||||| ||| ||||| |    
T  21456852 ttgattagccataacttgaacttcttcaacattctgagcttcagagacttcaacattctgagttggaggaacttcaacattctgagcttcagttgttttc 21456753  T
Q  201 tgaacaacctgagctgtttctttgtcttcttgaaacacttcattgttgaagtcagtgttgatgtcttcaacattcagatcaaacctagttgagaaatcca 300  Q
    ||||||  ||||| |||||||| | | ||||||||||||| ||||||||||||||||||||| ||||||||||| ||||| | || ||||||||||||||    
T  21456752 tgaacatactgagttgtttcttggccatcttgaaacacttgattgttgaagtcagtgttgatatcttcaacatttagatccatcccagttgagaaatcca 21456653  T
Q  301 tttgttcttcttgaacttcttct---tcaatactcatatttgaagccaagagttcaaccacctcttgagtgtcttcatcaacattttgagtattaatctc 397  Q
    | |||||  ||||||||||||||   ||||||||||| ||||| || |  | |||| | |||||||||||    ||||||||| | |||| || || |||    
T  21456652 tgtgttcaacttgaacttcttcttcatcaatactcatgtttgaggctagtaattcagctacctcttgagttgtatcatcaacaatctgagcatcaaactc 21456553  T
Q  398 agtattttcttcaactctctg 418  Q
    |||||||||||||||||||||    
T  21456552 agtattttcttcaactctctg 21456532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 129; Significance: 1e-66; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 1 - 415
Target Start/End: Complemental strand, 21459512 - 21459110
Alignment:
Q  1 agggcaaagatcctgaggccagaggcgctggatctgctgacagctgaccaccttgaaggggttcatttgaagcattttgatcatcaagctcttgatcatc 100  Q
    |||||| ||||||||| |||| ||||  ||||||  ||||||||||  || || |||| ||||||||||| ||||| ||||||||||  |||||| |||     
T  21459512 agggcagagatcctgatgccaaaggcattggatcaactgacagctggacatctggaagaggttcatttgatgcattctgatcatcaaattcttgaacatt 21459413  T
Q  101 ttgattagccatgacttgaacatcttcaacattctgagcttcagacacttcaacgttctgagcagcagtggcttcaacattctgagctgcagatgtttcc 200  Q
     ||||||| ||||||  ||| ||||||||||||||||||  |||  |||  ||| |||||||||| |    |||||||||||||||||| || |||||||    
T  21459412 ctgattagacatgacaggaatatcttcaacattctgagcagcaggaactgtaacattctgagcagaac---cttcaacattctgagctgtagttgtttcc 21459316  T
Q  201 tgaacaacctgagctgtttctttgtcttcttgaaacacttcattgttgaagtcagtgttgatgtcttcaacattcagatcaaacctagttgagaaatcca 300  Q
    |||         ||||||||||   | |||||||| |||||||||||||||||||||||||| ||||||| ||| |||||||| | ||||||||| ||||    
T  21459315 tga---------gctgtttcttgtccatcttgaaatacttcattgttgaagtcagtgttgatatcttcaatattgagatcaaatccagttgagaattcca 21459225  T
Q  301 tttgttcttcttgaacttcttcttcaatactcatatttgaagccaagagttcaaccacctcttgagtgtcttcatcaacattttgagtattaatctcagt 400  Q
    | ||||| |||||||| |||||||||||| |||| |||||||||||||| |||  ||| || ||||| |||||||||| ||| ||||||||  |||||||    
T  21459224 tatgttcatcttgaacatcttcttcaatattcatgtttgaagccaagagctcagtcacttcctgagtatcttcatcaaaattctgagtattcttctcagt 21459125  T
Q  401 attttcttcaactct 415  Q
    |||||||||||||||    
T  21459124 attttcttcaactct 21459110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 228 - 415
Target Start/End: Original strand, 21989892 - 21990073
Alignment:
Q  228 tcttgaaacacttcattgttgaagtcagtgttgatgtcttcaacattcagatcaaacctagttgagaaatccatttgttcttcttgaacttcttcttcaa 327  Q
    ||||||||||||||| | ||||||||||||||||| ||||||| ||| |||||||| | ||||||||| ||||      | |||||| ||||||||||||    
T  21989892 tcttgaaacacttcactattgaagtcagtgttgatatcttcaatattgagatcaaatccagttgagaactcca------catcttgagcttcttcttcaa 21989985  T
Q  328 tactcatatttgaagccaagagttcaaccacctcttgagtgtcttcatcaacattttgagtattaatctcagtattttcttcaactct 415  Q
    |  ||||||||||||| ||||| ||| |||| || ||||| ||| |||||||||| ||||||  || |||||||||||||||||||||    
T  21989986 tgttcatatttgaagctaagagctcagccacttcctgagtttctccatcaacattctgagtaccaaactcagtattttcttcaactct 21990073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 1 - 161
Target Start/End: Original strand, 21989641 - 21989801
Alignment:
Q  1 agggcaaagatcctgaggccagaggcgctggatctgctgacagctgaccaccttgaaggggttcatttgaagcattttgatcatcaagctcttgatcatc 100  Q
    |||||| ||||||||| |||| ||||   |||||  |||||||||| ||| || || |  |||||||||| ||||  |||||||||||||||||||  ||    
T  21989641 agggcagagatcctgatgccaaaggcatgggatcaactgacagctggccatctggaggaagttcatttgaggcatgctgatcatcaagctcttgattgtc 21989740  T
Q  101 ttgattagccatgacttgaacatcttcaacattctgagcttcagacacttcaacgttctga 161  Q
    ||||| ||||||||| |||| ||||||| ||||||| |||||||  ||| |||| ||||||    
T  21989741 ttgatcagccatgacatgaatatcttcatcattctgggcttcagttactgcaacattctga 21989801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 1 - 161
Target Start/End: Original strand, 9326881 - 9327041
Alignment:
Q  1 agggcaaagatcctgaggccagaggcgctggatctgctgacagctgaccaccttgaaggggttcatttgaagcattttgatcatcaagctcttgatcatc 100  Q
    |||||| ||||||||| |||| ||||   |||||  |||||||||| ||| || || |  |||||||||| ||||  |||||||||||||||||||  ||    
T  9326881 agggcagagatcctgatgccaaaggcatgggatcaactgacagctggccatctggaggaagttcatttgaggcatgctgatcatcaagctcttgattgtc 9326980  T
Q  101 ttgattagccatgacttgaacatcttcaacattctgagcttcagacacttcaacgttctga 161  Q
    ||||| ||||||||| |||| | ||||| ||||||| |||||||  ||| |||| ||||||    
T  9326981 ttgatcagccatgacatgaataccttcatcattctgggcttcagttactgcaacattctga 9327041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 1 - 161
Target Start/End: Original strand, 21204727 - 21204887
Alignment:
Q  1 agggcaaagatcctgaggccagaggcgctggatctgctgacagctgaccaccttgaaggggttcatttgaagcattttgatcatcaagctcttgatcatc 100  Q
    |||||| ||||||||| |||| ||||   |||||  |||||||||| ||| || || |  |||||||||| ||||  |||||||||||||||||||  ||    
T  21204727 agggcagagatcctgatgccaaaggcatgggatcaactgacagctggccatctggaggaagttcatttgaggcatgctgatcatcaagctcttgattgtc 21204826  T
Q  101 ttgattagccatgacttgaacatcttcaacattctgagcttcagacacttcaacgttctga 161  Q
    ||||| ||||||||| |||| | ||||| ||||||| |||||||  ||| |||| ||||||    
T  21204827 ttgatcagccatgacatgaataccttcatcattctgggcttcagttactgcaacattctga 21204887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 61 - 161
Target Start/End: Complemental strand, 21332312 - 21332212
Alignment:
Q  61 gttcatttgaagcattttgatcatcaagctcttgatcatcttgattagccatgacttgaacatcttcaacattctgagcttcagacacttcaacgttctg 160  Q
    |||||||||| ||||  |||||||||||||||||||  ||| ||| ||||||||| |||| ||||||| ||||||| |||| ||||||| |||| |||||    
T  21332312 gttcatttgaggcatgctgatcatcaagctcttgattgtctcgatcagccatgacatgaatatcttcatcattctgggctttagacactgcaacattctg 21332213  T
Q  161 a 161  Q
    |    
T  21332212 a 21332212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 228 - 380
Target Start/End: Original strand, 21204978 - 21205124
Alignment:
Q  228 tcttgaaacacttcattgttgaagtcagtgttgatgtcttcaacattcagatcaaacctagttgagaaatccatttgttcttcttgaacttcttcttcaa 327  Q
    ||||||||||  ||| | ||||||||| ||||||| ||||||| ||| |||||||| | ||||||||| ||||      | |||||| ||||||||||||    
T  21204978 tcttgaaacaactcactattgaagtcaatgttgatatcttcaatattgagatcaaaaccagttgagaactcca------catcttgagcttcttcttcaa 21205071  T
Q  328 tactcatatttgaagccaagagttcaaccacctcttgagtgtcttcatcaaca 380  Q
    |  ||||||||||||| ||||| ||| |||| || ||||| ||| ||||||||    
T  21205072 tgttcatatttgaagctaagagctcagccacttcctgagtttctccatcaaca 21205124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 228 - 380
Target Start/End: Complemental strand, 21332121 - 21331975
Alignment:
Q  228 tcttgaaacacttcattgttgaagtcagtgttgatgtcttcaacattcagatcaaacctagttgagaaatccatttgttcttcttgaacttcttcttcaa 327  Q
    ||||||||||  ||| | ||||||||| ||||||| ||||||| ||| |||||||| | ||||||||| ||||      | |||||| ||||||||||||    
T  21332121 tcttgaaacaactcactattgaagtcaatgttgatatcttcaatattgagatcaaatccagttgagaactcca------catcttgagcttcttcttcaa 21332028  T
Q  328 tactcatatttgaagccaagagttcaaccacctcttgagtgtcttcatcaaca 380  Q
    |  ||||||||||||| ||||| ||| |||| || ||||| ||| ||||||||    
T  21332027 tgttcatatttgaagctaagagctcagccacttcctgagtttctccatcaaca 21331975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 129; Significance: 1e-66; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 1 - 415
Target Start/End: Complemental strand, 45023224 - 45022822
Alignment:
Q  1 agggcaaagatcctgaggccagaggcgctggatctgctgacagctgaccaccttgaaggggttcatttgaagcattttgatcatcaagctcttgatcatc 100  Q
    |||||| ||||||||| |||| ||||  ||||||  ||||||||||  || || |||| ||||||||||| ||||| ||||||||||  |||||| |||     
T  45023224 agggcagagatcctgatgccaaaggcattggatcaactgacagctggtcatctggaagaggttcatttgatgcattctgatcatcaaattcttgaacatt 45023125  T
Q  101 ttgattagccatgacttgaacatcttcaacattctgagcttcagacacttcaacgttctgagcagcagtggcttcaacattctgagctgcagatgtttcc 200  Q
    |||||||| ||||||  ||| ||||| ||||||||||||  |||  |||  ||| |||||||||| |    |||||||||||||||||| || |||||||    
T  45023124 ttgattagacatgacaggaatatctttaacattctgagcagcaggaactgtaacattctgagcagaac---cttcaacattctgagctgtagttgtttcc 45023028  T
Q  201 tgaacaacctgagctgtttctttgtcttcttgaaacacttcattgttgaagtcagtgttgatgtcttcaacattcagatcaaacctagttgagaaatcca 300  Q
    |||         ||||||||||   | |||||||| |||||||||||||||||||||||||| ||||||| ||| |||||||| | ||||||||| ||||    
T  45023027 tga---------gctgtttcttgtccatcttgaaatacttcattgttgaagtcagtgttgatatcttcaatattgagatcaaatccagttgagaattcca 45022937  T
Q  301 tttgttcttcttgaacttcttcttcaatactcatatttgaagccaagagttcaaccacctcttgagtgtcttcatcaacattttgagtattaatctcagt 400  Q
    | ||||| |||||||| |||||||||||| |||| |||||||||||||| |||  ||| || ||||| |||||||||| ||| ||||||||  |||||||    
T  45022936 tatgttcatcttgaacatcttcttcaatattcatgtttgaagccaagagctcagtcacttcctgagtatcttcatcaaaattctgagtattcttctcagt 45022837  T
Q  401 attttcttcaactct 415  Q
    |||||||||||||||    
T  45022836 attttcttcaactct 45022822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 1 - 185
Target Start/End: Original strand, 9505508 - 9505692
Alignment:
Q  1 agggcaaagatcctgaggccagaggcgctggatctgctgacagctgaccaccttgaaggggttcatttgaagcattttgatcatcaagctcttgatcatc 100  Q
    |||||| ||||||||| |||| ||||   |||||  |||||||||| ||| || || |  |||||||||| ||||  |||||||||||||||||||  ||    
T  9505508 agggcagagatcctgatgccaaaggcatgggatcaactgacagctggccatctggaggaagttcatttgaggcatgctgatcatcaagctcttgattgtc 9505607  T
Q  101 ttgattagccatgacttgaacatcttcaacattctgagcttcagacacttcaacgttctgagcagcagtggcttcaacattctga 185  Q
    ||||| ||||||||| |||| ||||||| ||||||| ||||||||||||  ||| |||||| ||||||  | |||||||||||||    
T  9505608 ttgatcagccatgacatgaatatcttcatcattctgggcttcagacactgtaacattctgaccagcagaagtttcaacattctga 9505692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 228 - 407
Target Start/End: Complemental strand, 18659512 - 18659339
Alignment:
Q  228 tcttgaaacacttcattgttgaagtcagtgttgatgtcttcaacattcagatcaaacctagttgagaaatccatttgttcttcttgaacttcttcttcaa 327  Q
    ||||||||||  ||| ||||||||||| ||||||| ||||||| ||| |||||||| | ||||||||| ||||      | |||||| ||||||||||||    
T  18659512 tcttgaaacaactcactgttgaagtcaatgttgatatcttcaatattgagatcaaatccagttgagaactcca------catcttgagcttcttcttcaa 18659419  T
Q  328 tactcatatttgaagccaagagttcaaccacctcttgagtgtcttcatcaacattttgagtattaatctcagtattttct 407  Q
    |  ||||||||||||| ||||| ||| |||| || ||||| ||| |||||||||| ||||||  || |||||||||||||    
T  18659418 tgttcatatttgaagctaagagctcagccacttcctgagtttctccatcaacattctgagtaccaaactcagtattttct 18659339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 1 - 185
Target Start/End: Complemental strand, 18659763 - 18659579
Alignment:
Q  1 agggcaaagatcctgaggccagaggcgctggatctgctgacagctgaccaccttgaaggggttcatttgaagcattttgatcatcaagctcttgatcatc 100  Q
    |||||| ||||||||| |||| ||||   |||||  |||||||||| ||| || || |  |||||||||| ||||  |||||||||||||||||||  ||    
T  18659763 agggcagagatcctgatgccaaaggcatgggatcaactgacagctggccatctggaggaagttcatttgaggcatgctgatcatcaagctcttgattgtc 18659664  T
Q  101 ttgattagccatgacttgaacatcttcaacattctgagcttcagacacttcaacgttctgagcagcagtggcttcaacattctga 185  Q
    | ||| ||||||||| |||| ||||||| ||||||| |||| ||||||| |||| |||||| || |||  | |||||||||||||    
T  18659663 tcgatcagccatgacatgaatatcttcatcattctgggctttagacactgcaacattctgaccaacagaagtttcaacattctga 18659579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 228 - 380
Target Start/End: Original strand, 9505759 - 9505905
Alignment:
Q  228 tcttgaaacacttcattgttgaagtcagtgttgatgtcttcaacattcagatcaaacctagttgagaaatccatttgttcttcttgaacttcttcttcaa 327  Q
    ||||||||||  ||| | ||||||||| ||||||| ||||||| ||| |||||||| | ||||||||| ||||      | |||||| ||||||||||||    
T  9505759 tcttgaaacaactcactattgaagtcaatgttgatatcttcaatattgagatcaaatccagttgagaactcca------catcttgagcttcttcttcaa 9505852  T
Q  328 tactcatatttgaagccaagagttcaaccacctcttgagtgtcttcatcaaca 380  Q
    |  ||||||||||||| ||||| ||| |||| || ||||| ||| ||||||||    
T  9505853 tgttcatatttgaagctaagagctcagccacttcctgagtttctccatcaaca 9505905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 114; Significance: 1e-57; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 1 - 415
Target Start/End: Original strand, 24923623 - 24924019
Alignment:
Q  1 agggcaaagatcctgaggccagaggcgctggatctgctgacagctgaccaccttgaaggggttcatttgaagcattttgatcatcaagctcttgatcatc 100  Q
    |||||||||||||||| |||| ||||  |||||||||||||||||| ||| ||||||| ||||||||||| ||||| |||||| |||| |||||| |||     
T  24923623 agggcaaagatcctgaagccaaaggcattggatctgctgacagctggccatcttgaagaggttcatttgatgcattctgatcaacaagttcttgaacatt 24923722  T
Q  101 ttgattagccatgacttgaacatcttcaacattctgagcttcagacacttcaacgttctgagcagcagtggcttcaacattctgagctgcagatgtttcc 200  Q
     ||||||| ||  ||  ||| || |||||||||||||||  |||  ||| |||| |||||||||| |   ||||||||||||||||||  || || ||      
T  24923723 ctgattagacaaaacaggaatattttcaacattctgagcagcaggaactgcaacattctgagcagaa---gcttcaacattctgagctttagttgctt-- 24923817  T
Q  201 tgaacaacctgagctgtttctttgtcttcttgaaacacttcattgttgaagtcagtgttgatgtcttcaacattcagatcaaacctagttgagaaatcca 300  Q
           |||||||||||||||   | ||||||||||||||||||||||||||||||||||| ||||||| ||| |||||||| | ||||||||| ||||    
T  24923818 -------cctgagctgtttcttgtccatcttgaaacacttcattgttgaagtcagtgttgatatcttcaatattgagatcaaatccagttgagaactcca 24923910  T
Q  301 tttgttcttcttgaacttcttcttcaatactcatatttgaagccaagagttcaaccacctcttgagtgtcttcatcaacattttgagtattaatctcagt 400  Q
          | |||||| |||||||||||||  ||||||||||||| ||||  ||| |||| || ||||| |||||||||||||  ||||||| || |||| |    
T  24923911 ------catcttgagcttcttcttcaatgttcatatttgaagctaagatctcagccacttcctgagtttcttcatcaacatcctgagtatcaaactcaat 24924004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 228 - 415
Target Start/End: Complemental strand, 31365365 - 31365184
Alignment:
Q  228 tcttgaaacacttcattgttgaagtcagtgttgatgtcttcaacattcagatcaaacctagttgagaaatccatttgttcttcttgaacttcttcttcaa 327  Q
    ||||||||||||||| | ||||||||||||||||| ||||||| ||| |||||||| | ||||||||| ||||      | |||||| ||||||||||||    
T  31365365 tcttgaaacacttcactattgaagtcagtgttgatatcttcaatattgagatcaaatccagttgagaactcca------catcttgagcttcttcttcaa 31365272  T
Q  328 tactcatatttgaagccaagagttcaaccacctcttgagtgtcttcatcaacattttgagtattaatctcagtattttcttcaactct 415  Q
    |  ||||||||||||| ||||| ||| |||| || ||||| ||| |||||||||| ||||||  || |||||||||||||||||||||    
T  31365271 tgttcatatttgaagctaagagctcagccacttcctgagtttctccatcaacattctgagtaccaaactcagtattttcttcaactct 31365184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 228 - 415
Target Start/End: Complemental strand, 16906498 - 16906317
Alignment:
Q  228 tcttgaaacacttcattgttgaagtcagtgttgatgtcttcaacattcagatcaaacctagttgagaaatccatttgttcttcttgaacttcttcttcaa 327  Q
    ||||||||||  ||| | ||||||||| ||||||| ||||||| ||| |||||||| | ||||||||| ||||      | |||||| ||||||||||||    
T  16906498 tcttgaaacaactcactattgaagtcaatgttgatatcttcaatattgagatcaaatccagttgagaactcca------catcttgagcttcttcttcaa 16906405  T
Q  328 tactcatatttgaagccaagagttcaaccacctcttgagtgtcttcatcaacattttgagtattaatctcagtattttcttcaactct 415  Q
    |  ||||||||||||| ||||| ||| |||| || ||||| ||| |||||||||| ||||||| || |||| ||||||||||||||||    
T  16906404 tgttcatatttgaagctaagagctcagccacttcctgagtttctccatcaacattctgagtatcaaactcaatattttcttcaactct 16906317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 228 - 415
Target Start/End: Complemental strand, 18167792 - 18167611
Alignment:
Q  228 tcttgaaacacttcattgttgaagtcagtgttgatgtcttcaacattcagatcaaacctagttgagaaatccatttgttcttcttgaacttcttcttcaa 327  Q
    ||||||||||  ||| | ||||||||| ||||||| ||||||| ||| |||||||| | ||||||||| ||||      | |||||| ||||||||||||    
T  18167792 tcttgaaacaactcactattgaagtcaatgttgatatcttcaatattgagatcaaatccagttgagaactcca------catcttgagcttcttcttcaa 18167699  T
Q  328 tactcatatttgaagccaagagttcaaccacctcttgagtgtcttcatcaacattttgagtattaatctcagtattttcttcaactct 415  Q
    |  ||||||||||||| ||||| ||| |||| || ||||| | | |||||||||| ||||||  || |||||||||||||||||||||    
T  18167698 tgttcatatttgaagctaagagctcagccacttcctgagtttttccatcaacattctgagtaccaaactcagtattttcttcaactct 18167611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 1 - 154
Target Start/End: Complemental strand, 18199711 - 18199558
Alignment:
Q  1 agggcaaagatcctgaggccagaggcgctggatctgctgacagctgaccaccttgaaggggttcatttgaagcattttgatcatcaagctcttgatcatc 100  Q
    |||||||||||||||| |||| || |  | |||||||||||||||| ||||||||||| |||||||| || ||||| ||||||||||   ||| | |||     
T  18199711 agggcaaagatcctgaagccaaagccattagatctgctgacagctggccaccttgaagaggttcattagatgcattctgatcatcaaatactttaacatt 18199612  T
Q  101 ttgattagccatgacttgaacatcttcaacattctgagcttcagacacttcaac 154  Q
     ||||||| ||||||  ||| ||||||||||||||||||  |||| ||||||||    
T  18199611 ctgattagtcatgacaggaatatcttcaacattctgagcagcagaaacttcaac 18199558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 1 - 150
Target Start/End: Complemental strand, 18167971 - 18167822
Alignment:
Q  1 agggcaaagatcctgaggccagaggcgctggatctgctgacagctgaccaccttgaaggggttcatttgaagcattttgatcatcaagctcttgatcatc 100  Q
    |||||| ||||||||| |||| ||||   |||||  |||||||||| ||| || || |  |||||||||| ||||  |||||||||||||||||||  ||    
T  18167971 agggcagagatcctgatgccaaaggcatgggatcaactgacagctggccatctggaggaagttcatttgaggcatgctgatcatcaagctcttgattgtc 18167872  T
Q  101 ttgattagccatgacttgaacatcttcaacattctgagcttcagacactt 150  Q
    ||||| ||||||||| |||| ||||||| ||||||| |||| ||||||||    
T  18167871 ttgatcagccatgacatgaatatcttcatcattctgggctttagacactt 18167822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 1 - 161
Target Start/End: Complemental strand, 31365616 - 31365456
Alignment:
Q  1 agggcaaagatcctgaggccagaggcgctggatctgctgacagctgaccaccttgaaggggttcatttgaagcattttgatcatcaagctcttgatcatc 100  Q
    |||||| ||||||||| |||| ||||   |||||  |||||||||| ||| || || |  |||||||||| ||||  |||||||||||||||||||  ||    
T  31365616 agggcagagatcctgatgccaaaggcatgggatcaactgacagctggccatctggaggaagttcatttgaggcatgctgatcatcaagctcttgattgtc 31365517  T
Q  101 ttgattagccatgacttgaacatcttcaacattctgagcttcagacacttcaacgttctga 161  Q
    ||||| ||||||||| |||| ||||||| ||||||| |||||||  ||| |||| ||||||    
T  31365516 ttgatcagccatgacatgaatatcttcatcattctgggcttcagttactgcaacattctga 31365456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 1 - 161
Target Start/End: Complemental strand, 16906749 - 16906589
Alignment:
Q  1 agggcaaagatcctgaggccagaggcgctggatctgctgacagctgaccaccttgaaggggttcatttgaagcattttgatcatcaagctcttgatcatc 100  Q
    |||||| ||||||||| |||| ||||   |||||  |||||||||| ||| || || |  |||||||||| ||||  |||||||||||||||||||  ||    
T  16906749 agggcagagatcctgatgccaaaggcatgggatcaactgacagctggccatctggaggaagttcatttgaggcatgctgatcatcaagctcttgattgtc 16906650  T
Q  101 ttgattagccatgacttgaacatcttcaacattctgagcttcagacacttcaacgttctga 161  Q
    ||||| ||||||||| |||| | ||||| ||||||| |||||||  ||| |||| ||||||    
T  16906649 ttgatcagccatgacatgaataccttcatcattctgggcttcagttactgcaacattctga 16906589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 102; Significance: 2e-50; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 1 - 415
Target Start/End: Complemental strand, 6431195 - 6430799
Alignment:
Q  1 agggcaaagatcctgaggccagaggcgctggatctgctgacagctgaccaccttgaaggggttcatttgaagcattttgatcatcaagctcttgatcatc 100  Q
    |||||||||||||||| |||| ||||  ||||| |||||||||||| ||| ||||||| ||||||||||| ||||| |||||| |||  |||||| |||     
T  6431195 agggcaaagatcctgaagccaaaggcattggatatgctgacagctggccatcttgaagaggttcatttgatgcattctgatcaacaaattcttgaacatt 6431096  T
Q  101 ttgattagccatgacttgaacatcttcaacattctgagcttcagacacttcaacgttctgagcagcagtggcttcaacattctgagctgcagatgtttcc 200  Q
     ||||||| || |||  ||| || |||||||||||||||  |||  ||| |||| |||||||||| |   ||||||||||||||||||  || || ||      
T  6431095 ctgattagacaagacaggaatattttcaacattctgagcagcaggaactgcaacattctgagcagaa---gcttcaacattctgagctttagttgctt-- 6431001  T
Q  201 tgaacaacctgagctgtttctttgtcttcttgaaacacttcattgttgaagtcagtgttgatgtcttcaacattcagatcaaacctagttgagaaatcca 300  Q
           | |||||||||||||   | ||||||||||||||| ||||||||||||||||||| ||||||| ||| |||||||| | ||||||||| ||||    
T  6431000 -------cttgagctgtttcttgtccatcttgaaacacttcactgttgaagtcagtgttgatatcttcaatattgagatcaaatccagttgagaactcca 6430908  T
Q  301 tttgttcttcttgaacttcttcttcaatactcatatttgaagccaagagttcaaccacctcttgagtgtcttcatcaacattttgagtattaatctcagt 400  Q
          | |||||| |||||||||||||  ||||||||||||| ||||  ||| |||| || ||||| |||||||||||||  ||||||| || |||| |    
T  6430907 ------catcttgagcttcttcttcaatgttcatatttgaagctaagatctcagccacttcctgagtttcttcatcaacatcctgagtatcaaactcaat 6430814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 228 - 415
Target Start/End: Complemental strand, 8981486 - 8981305
Alignment:
Q  228 tcttgaaacacttcattgttgaagtcagtgttgatgtcttcaacattcagatcaaacctagttgagaaatccatttgttcttcttgaacttcttcttcaa 327  Q
    ||||||||||||||| | ||||||||||||||||| ||||||| ||| |||||||| | ||||||||| ||||      | |||||| ||||||||||||    
T  8981486 tcttgaaacacttcactattgaagtcagtgttgatatcttcaatattgagatcaaatccagttgagaactcca------catcttgagcttcttcttcaa 8981393  T
Q  328 tactcatatttgaagccaagagttcaaccacctcttgagtgtcttcatcaacattttgagtattaatctcagtattttcttcaactct 415  Q
    |  ||||||||||||| ||||| ||| |||| || ||||| ||| |||||||||| ||||||  || |||||||||||||||||||||    
T  8981392 tgttcatatttgaagctaagagctcagccacttcctgagtttctccatcaacattctgagtaccaaactcagtattttcttcaactct 8981305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 228 - 415
Target Start/End: Complemental strand, 16409403 - 16409222
Alignment:
Q  228 tcttgaaacacttcattgttgaagtcagtgttgatgtcttcaacattcagatcaaacctagttgagaaatccatttgttcttcttgaacttcttcttcaa 327  Q
    ||||||||||||||| | ||||||||||||||||| ||||||| ||| |||||||| | ||||||||| ||||      | |||||| ||||||||||||    
T  16409403 tcttgaaacacttcactattgaagtcagtgttgatttcttcaatattgagatcaaatccagttgagaactcca------catcttgagcttcttcttcaa 16409310  T
Q  328 tactcatatttgaagccaagagttcaaccacctcttgagtgtcttcatcaacattttgagtattaatctcagtattttcttcaactct 415  Q
    |  ||||||| ||||| ||||| ||| |||| || || || |||||||||||||| ||||||| || |||| ||||||||||||||||    
T  16409309 tgttcatattagaagctaagagctcagccacttcctgggtttcttcatcaacattctgagtatcaaactcaatattttcttcaactct 16409222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 228 - 407
Target Start/End: Complemental strand, 9545491 - 9545318
Alignment:
Q  228 tcttgaaacacttcattgttgaagtcagtgttgatgtcttcaacattcagatcaaacctagttgagaaatccatttgttcttcttgaacttcttcttcaa 327  Q
    ||||||||||  ||| | ||||||||| ||||||| ||||||| ||| |||||||| | ||||||||| ||||      | |||||| ||||||||||||    
T  9545491 tcttgaaacaactcactattgaagtcaatgttgatatcttcaatattgagatcaaatccagttgagaactcca------catcttgagcttcttcttcaa 9545398  T
Q  328 tactcatatttgaagccaagagttcaaccacctcttgagtgtcttcatcaacattttgagtattaatctcagtattttct 407  Q
    |  ||||||||||||| ||||| ||| |||| || ||||| ||| |||||||||| ||||||  || |||||||||||||    
T  9545397 tgttcatatttgaagctaagagctcagccacttcctgagtttctccatcaacattctgagtaccaaactcagtattttct 9545318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 1 - 185
Target Start/End: Complemental strand, 9545742 - 9545558
Alignment:
Q  1 agggcaaagatcctgaggccagaggcgctggatctgctgacagctgaccaccttgaaggggttcatttgaagcattttgatcatcaagctcttgatcatc 100  Q
    |||||| ||||||||| |||| ||||   |||||  |||||||||| ||| || || |  |||||||||| ||||  |||||||||||||||||||  ||    
T  9545742 agggcagagatcctgatgccaaaggcatgggatcaactgacagctggccatctggaggaagttcatttgaggcatgctgatcatcaagctcttgattgtc 9545643  T
Q  101 ttgattagccatgacttgaacatcttcaacattctgagcttcagacacttcaacgttctgagcagcagtggcttcaacattctga 185  Q
    | ||| ||||||||| |||| ||||||| ||||||| |||| ||||||| |||| |||||| || |||  | |||||||||||||    
T  9545642 tcgatcagccatgacatgaatatcttcatcattctgggctttagacactgcaacattctgaccaacagaagtttcaacattctga 9545558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 61 - 185
Target Start/End: Complemental strand, 16409594 - 16409470
Alignment:
Q  61 gttcatttgaagcattttgatcatcaagctcttgatcatcttgattagccatgacttgaacatcttcaacattctgagcttcagacacttcaacgttctg 160  Q
    |||||||||| ||||  |||||||||||||||||||  ||||||| ||||||||| |||| ||||||| |||| || |||||||||||| || | |||||    
T  16409594 gttcatttgaggcatgctgatcatcaagctcttgattgtcttgatcagccatgacatgaatatcttcatcattatgggcttcagacactgcagcattctg 16409495  T
Q  161 agcagcagtggcttcaacattctga 185  Q
    | ||||||  | |||||||||||||    
T  16409494 accagcagaagtttcaacattctga 16409470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 1 - 161
Target Start/End: Complemental strand, 8981737 - 8981577
Alignment:
Q  1 agggcaaagatcctgaggccagaggcgctggatctgctgacagctgaccaccttgaaggggttcatttgaagcattttgatcatcaagctcttgatcatc 100  Q
    |||||| ||||||||| |||| ||||   |||||  |||||||||| ||| || || |  |||||||||| ||||  |||||||||||||||||||  ||    
T  8981737 agggcagagatcctgatgccaaaggcatgggatcaactgacagctggccatctggaggaagttcatttgaggcatgctgatcatcaagctcttgattgtc 8981638  T
Q  101 ttgattagccatgacttgaacatcttcaacattctgagcttcagacacttcaacgttctga 161  Q
    ||||| ||||||||| |||| ||||||| ||||||| |||||||  ||| |||| ||||||    
T  8981637 ttgatcagccatgacatgaatatcttcatcattctgggcttcagttactgcaacattctga 8981577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 93; Significance: 4e-45; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 147 - 415
Target Start/End: Original strand, 19383642 - 19383910
Alignment:
Q  147 acttcaacgttctgagcagcagtggcttcaacattctgagctgcagatgtttcctgaacaacctgagctgtttctttgtcttcttgaaacacttcattgt 246  Q
    |||||||| |||||||||||||   |||||||| ||||||||  |  |||||||||||||   | || ||||||||   | |||||||||| || |||||    
T  19383642 acttcaacattctgagcagcagaaacttcaacaatctgagctttatttgtttcctgaacatattaagatgtttcttgaccatcttgaaacatttaattgt 19383741  T
Q  247 tgaagtcagtgttgatgtcttcaacattcagatcaaacctagttgagaaatccatttgttcttcttgaacttcttcttcaatactcatatttgaagccaa 346  Q
    |||||||||||||||| ||||||| ||| |||||||||| |||||||||  |||| |||||  ||||||| |||||||||||   ||| |||||||| ||    
T  19383742 tgaagtcagtgttgatatcttcaatattgagatcaaacccagttgagaaccccatatgttcaacttgaacatcttcttcaatcaacatgtttgaagctaa 19383841  T
Q  347 gagttcaaccacctcttgagtgtcttcatcaacattttgagtattaatctcagtattttcttcaactct 415  Q
    ||| ||| |||| || ||||| |||||||||||||| |||||||   ||||||||||||||||||||||    
T  19383842 gagctcagccacttcctgagtatcttcatcaacattctgagtatccttctcagtattttcttcaactct 19383910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 228 - 415
Target Start/End: Original strand, 26194109 - 26194290
Alignment:
Q  228 tcttgaaacacttcattgttgaagtcagtgttgatgtcttcaacattcagatcaaacctagttgagaaatccatttgttcttcttgaacttcttcttcaa 327  Q
    ||||||||||||||| | ||||||||||||||||| ||||||| ||| |||||||| | ||||||||| ||||      | |||||| ||||||||||||    
T  26194109 tcttgaaacacttcactattgaagtcagtgttgatatcttcaatattgagatcaaatccagttgagaactcca------catcttgagcttcttcttcaa 26194202  T
Q  328 tactcatatttgaagccaagagttcaaccacctcttgagtgtcttcatcaacattttgagtattaatctcagtattttcttcaactct 415  Q
    |  ||||||||||||| ||||| ||| |||| || ||||| ||| |||||||||| ||||||  || |||||||||||||||||||||    
T  26194203 tgttcatatttgaagctaagagctcagccacttcctgagtttctccatcaacattctgagtaccaaactcagtattttcttcaactct 26194290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 256 - 415
Target Start/End: Original strand, 19380734 - 19380893
Alignment:
Q  256 tgttgatgtcttcaacattcagatcaaacctagttgagaaatccatttgttcttcttgaacttcttcttcaatactcatatttgaagccaagagttcaac 355  Q
    ||||||| ||||||| ||| ||||||| || ||||||||| ||||| |||||  ||||||| |||||||||||   ||| |||||||| ||||| ||| |    
T  19380734 tgttgatatcttcaatattgagatcaatcccagttgagaactccatatgttcaacttgaacatcttcttcaatcaacatgtttgaagctaagagctcagc 19380833  T
Q  356 cacctcttgagtgtcttcatcaacattttgagtattaatctcagtattttcttcaactct 415  Q
    ||| || ||||| |||||||||||||| |||||||   ||||||||||||||||||||||    
T  19380834 cacttcctgagtatcttcatcaacattctgagtatccttctcagtattttcttcaactct 19380893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 228 - 415
Target Start/End: Complemental strand, 18388312 - 18388131
Alignment:
Q  228 tcttgaaacacttcattgttgaagtcagtgttgatgtcttcaacattcagatcaaacctagttgagaaatccatttgttcttcttgaacttcttcttcaa 327  Q
    ||||||||||  ||| | ||||||||| ||||||| ||||||| ||| |||||||| | ||||||||| ||||      | |||||| ||||||||||||    
T  18388312 tcttgaaacaactcactattgaagtcaatgttgatatcttcaatattgagatcaaatccagttgagaactcca------catcttgagcttcttcttcaa 18388219  T
Q  328 tactcatatttgaagccaagagttcaaccacctcttgagtgtcttcatcaacattttgagtattaatctcagtattttcttcaactct 415  Q
    |  ||||||||||||| ||||| ||| |||| || ||||| | | |||||||||| ||||||  || |||||||||||||||||||||    
T  18388218 tgttcatatttgaagctaagagctcagccacttcctgagtttttccatcaacattctgagtaccaaactcagtattttcttcaactct 18388131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 19383496 - 19383576
Alignment:
Q  1 agggcaaagatcctgaggccagaggcgctggatctgctgacagctgaccaccttgaaggggttcatttgaagcattttgat 81  Q
    |||||||||||| |||||||| |||| ||||||||||||||||||| ||||||||||| ||||||||||| ||||| ||||    
T  19383496 agggcaaagatcatgaggccaaaggcactggatctgctgacagctggccaccttgaagaggttcatttgatgcattctgat 19383576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 228 - 407
Target Start/End: Complemental strand, 33947650 - 33947477
Alignment:
Q  228 tcttgaaacacttcattgttgaagtcagtgttgatgtcttcaacattcagatcaaacctagttgagaaatccatttgttcttcttgaacttcttcttcaa 327  Q
    ||||||||||  ||| | ||||||||| ||||||| ||||||| ||| |||||||| | ||||||||| ||||      | |||||| ||||||||||||    
T  33947650 tcttgaaacaactcactattgaagtcaatgttgatatcttcaatattgagatcaaatccagttgagaactcca------catcttgagcttcttcttcaa 33947557  T
Q  328 tactcatatttgaagccaagagttcaaccacctcttgagtgtcttcatcaacattttgagtattaatctcagtattttct 407  Q
    |  ||||||||||||| ||||| ||| |||| || ||||| ||| |||||||||| ||||||  || |||||||||||||    
T  33947556 tgttcatatttgaagctaagagctcagccacttcctgagtttctccatcaacattctgagtaccaaactcagtattttct 33947477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 1 - 150
Target Start/End: Complemental strand, 18388491 - 18388342
Alignment:
Q  1 agggcaaagatcctgaggccagaggcgctggatctgctgacagctgaccaccttgaaggggttcatttgaagcattttgatcatcaagctcttgatcatc 100  Q
    |||||| ||||||||| |||| ||||   |||||  |||||||||| ||| || || |  |||||||||| ||||  |||||||||||||||||||  ||    
T  18388491 agggcagagatcctgatgccaaaggcatgggatcaactgacagctggccatctggaggaagttcatttgaggcatgctgatcatcaagctcttgattgtc 18388392  T
Q  101 ttgattagccatgacttgaacatcttcaacattctgagcttcagacactt 150  Q
    ||||| ||||||||| |||| ||||||| ||||||| |||| ||||||||    
T  18388391 ttgatcagccatgacatgaatatcttcatcattctgggctttagacactt 18388342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 1 - 161
Target Start/End: Original strand, 26193858 - 26194018
Alignment:
Q  1 agggcaaagatcctgaggccagaggcgctggatctgctgacagctgaccaccttgaaggggttcatttgaagcattttgatcatcaagctcttgatcatc 100  Q
    |||||| ||||||||| |||| ||||   |||||  |||||||||| ||| || || |  |||||||||| ||||  |||||||||||||||||||  ||    
T  26193858 agggcagagatcctgatgccaaaggcatgggatcaactgacagctggccatctggaggaagttcatttgaggcatgctgatcatcaagctcttgattgtc 26193957  T
Q  101 ttgattagccatgacttgaacatcttcaacattctgagcttcagacacttcaacgttctga 161  Q
    ||||| ||||||||| |||| ||||||| ||||||| |||||||  ||| |||| ||||||    
T  26193958 ttgatcagccatgacatgaatatcttcatcattctgggcttcagttactgcaacattctga 26194018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 1 - 161
Target Start/End: Complemental strand, 33947901 - 33947741
Alignment:
Q  1 agggcaaagatcctgaggccagaggcgctggatctgctgacagctgaccaccttgaaggggttcatttgaagcattttgatcatcaagctcttgatcatc 100  Q
    |||||| ||||||||| |||| ||||   |||||  |||||||||| ||| || || |  |||||||||| ||||  |||||||||||||||||||  ||    
T  33947901 agggcagagatcctgatgccaaaggcatgggatcaactgacagctggccatctggaggaagttcatttgaggcatgctgatcatcaagctcttgattgtc 33947802  T
Q  101 ttgattagccatgacttgaacatcttcaacattctgagcttcagacacttcaacgttctga 161  Q
    | ||| ||||||||| |||| ||||||| ||||||| |||| ||||||| |||| ||||||    
T  33947801 tcgatcagccatgacatgaatatcttcatcattctgggctttagacactgcaacattctga 33947741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0549 (Bit Score: 79; Significance: 9e-37; HSPs: 1)
Name: scaffold0549
Description:

Target: scaffold0549; HSP #1
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 252 - 418
Target Start/End: Complemental strand, 11245 - 11079
Alignment:
Q  252 tcagtgttgatgtcttcaacattcagatcaaacctagttgagaaatccatttgttcttcttgaacttcttcttcaatactcatatttgaagccaagagtt 351  Q
    ||||||||||| ||||||||||||||||||| || ||||||||||||||| || ||  ||||||||||||||||||||||||| ||||| ||||  | ||    
T  11245 tcagtgttgatatcttcaacattcagatcaatcccagttgagaaatccatgtgctcaacttgaacttcttcttcaatactcatgtttgaggccagtaatt 11146  T
Q  352 caaccacctcttgagtgtcttcatcaacattttgagtattaatctcagtattttcttcaactctctg 418  Q
    || | |||||||||||  | ||||||||| | |||| || || ||||||||||||||||||||||||    
T  11145 cagctacctcttgagttgcatcatcaacaatctgagcatcaaactcagtattttcttcaactctctg 11079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 73; Significance: 3e-33; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 228 - 415
Target Start/End: Complemental strand, 32107002 - 32106821
Alignment:
Q  228 tcttgaaacacttcattgttgaagtcagtgttgatgtcttcaacattcagatcaaacctagttgagaaatccatttgttcttcttgaacttcttcttcaa 327  Q
    ||||||||||||||| | ||||||||||||||||| ||||||| ||| |||||||| | ||||||||| ||||      | |||||| ||||||||||||    
T  32107002 tcttgaaacacttcactattgaagtcagtgttgatatcttcaatattgagatcaaatccagttgagaactcca------catcttgagcttcttcttcaa 32106909  T
Q  328 tactcatatttgaagccaagagttcaaccacctcttgagtgtcttcatcaacattttgagtattaatctcagtattttcttcaactct 415  Q
    |  ||||||||||||| ||||| ||| |||| || ||||| ||| |||||||||| ||||||  || |||||||||||||||||||||    
T  32106908 tgttcatatttgaagctaagagctcagccacttcctgagtttctccatcaacattctgagtaccaaactcagtattttcttcaactct 32106821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 228 - 415
Target Start/End: Complemental strand, 46505689 - 46505508
Alignment:
Q  228 tcttgaaacacttcattgttgaagtcagtgttgatgtcttcaacattcagatcaaacctagttgagaaatccatttgttcttcttgaacttcttcttcaa 327  Q
    ||||||||||  ||| | ||||||||| ||||||| ||||||| ||| |||||||| ||||||||||| ||||      | |||||| ||||||||||||    
T  46505689 tcttgaaacaactcactattgaagtcaatgttgatatcttcaatattgagatcaaatctagttgagaactcca------catcttgagcttcttcttcaa 46505596  T
Q  328 tactcatatttgaagccaagagttcaaccacctcttgagtgtcttcatcaacattttgagtattaatctcagtattttcttcaactct 415  Q
    |  ||||||||||||| ||||| ||| |||| || ||||| |||||||||||||| ||||||  || |||||||||||||||||||||    
T  46505595 tgttcatatttgaagctaagagctcagccacttcctgagtttcttcatcaacattctgagtaccaaactcagtattttcttcaactct 46505508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 228 - 415
Target Start/End: Original strand, 16133947 - 16134128
Alignment:
Q  228 tcttgaaacacttcattgttgaagtcagtgttgatgtcttcaacattcagatcaaacctagttgagaaatccatttgttcttcttgaacttcttcttcaa 327  Q
    ||||||||||  ||| | ||||||||| ||||||| ||||||| ||| |||||||| | ||||||||| ||||      | |||||| ||||||||||||    
T  16133947 tcttgaaacaactcactattgaagtcaatgttgatatcttcaatattgagatcaaatccagttgagaactcca------catcttgagcttcttcttcaa 16134040  T
Q  328 tactcatatttgaagccaagagttcaaccacctcttgagtgtcttcatcaacattttgagtattaatctcagtattttcttcaactct 415  Q
    |  ||||||||||||| ||||| ||| |||| || ||||| ||| |||||||||| ||||||  || |||||||||||||||||||||    
T  16134041 tgttcatatttgaagctaagagctcagccacttcctgagtttctccatcaacattctgagtaccaaactcagtattttcttcaactct 16134128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 1 - 185
Target Start/End: Original strand, 5383634 - 5383818
Alignment:
Q  1 agggcaaagatcctgaggccagaggcgctggatctgctgacagctgaccaccttgaaggggttcatttgaagcattttgatcatcaagctcttgatcatc 100  Q
    |||||| ||||||||| |||| ||||   |||||  |||||||||| ||| || || |  |||||||||| ||||  |||||||||||||||||||  ||    
T  5383634 agggcagagatcctgatgccaaaggcatgggatcaactgacagctggccatctggaggaagttcatttgaggcatgctgatcatcaagctcttgattgtc 5383733  T
Q  101 ttgattagccatgacttgaacatcttcaacattctgagcttcagacacttcaacgttctgagcagcagtggcttcaacattctga 185  Q
    | ||| ||||||||| |||| ||||||| ||||||| |||| ||||||| |||| |||||| || |||  | |||||||||||||    
T  5383734 tcgatcagccatgacatgaatatcttcatcattctgggctttagacactgcaacattctgaccaacagaagtttcaacattctga 5383818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 228 - 407
Target Start/End: Complemental strand, 8509359 - 8509186
Alignment:
Q  228 tcttgaaacacttcattgttgaagtcagtgttgatgtcttcaacattcagatcaaacctagttgagaaatccatttgttcttcttgaacttcttcttcaa 327  Q
    ||||||||||  ||| | ||||||||| ||||||| ||||||| ||| |||||||| | ||||||||| ||||      | |||||| ||||||||||||    
T  8509359 tcttgaaacaactcactattgaagtcaatgttgatatcttcaatattgagatcaaatccagttgagaactcca------catcttgagcttcttcttcaa 8509266  T
Q  328 tactcatatttgaagccaagagttcaaccacctcttgagtgtcttcatcaacattttgagtattaatctcagtattttct 407  Q
    |  ||||||||||||| ||||| ||| |||| || ||||| ||| |||||||||| ||||||  || |||||||||||||    
T  8509265 tgttcatatttgaagctaagagctcagccacttcctgagtttctccatcaacattctgagtaccaaactcagtattttct 8509186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 1 - 185
Target Start/End: Complemental strand, 8509610 - 8509426
Alignment:
Q  1 agggcaaagatcctgaggccagaggcgctggatctgctgacagctgaccaccttgaaggggttcatttgaagcattttgatcatcaagctcttgatcatc 100  Q
    |||||| ||||||||| |||| ||||   |||||  |||||||||| ||| || || |  |||||||||| ||||  |||||||||||||||||||  ||    
T  8509610 agggcagagatcctgatgccaaaggcatgggatcaactgacagctggccatctggaggaagttcatttgaggcatgctgatcatcaagctcttgattgtc 8509511  T
Q  101 ttgattagccatgacttgaacatcttcaacattctgagcttcagacacttcaacgttctgagcagcagtggcttcaacattctga 185  Q
    | ||| ||||||||| |||| ||||||| ||||||| |||| ||||||| |||| |||||| || |||  | |||||||||||||    
T  8509510 tcgatcagccatgacatgaatatcttcatcattctgggctttagacactgcaacattctgaccaacagaagtttcaacattctga 8509426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 1 - 185
Target Start/End: Original strand, 16133696 - 16133880
Alignment:
Q  1 agggcaaagatcctgaggccagaggcgctggatctgctgacagctgaccaccttgaaggggttcatttgaagcattttgatcatcaagctcttgatcatc 100  Q
    |||||| ||||||||| |||| ||||   |||||  |||||||||| ||| || || |  |||||||||| ||||  |||||||||||||||||||  ||    
T  16133696 agggcagagatcctgatgccaaaggcatgggatcaactgacagctggccatctggaggaagttcatttgaggcatgctgatcatcaagctcttgattgtc 16133795  T
Q  101 ttgattagccatgacttgaacatcttcaacattctgagcttcagacacttcaacgttctgagcagcagtggcttcaacattctga 185  Q
    | ||| ||||||||| |||| ||||||| ||||||| |||| ||||||| |||| |||||| || |||  | |||||||||||||    
T  16133796 tcgatcagccatgacatgaatatcttcatcattctgggctttagacactgcaacattctgaccaacagaagtttcaacattctga 16133880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 1 - 185
Target Start/End: Original strand, 26350018 - 26350202
Alignment:
Q  1 agggcaaagatcctgaggccagaggcgctggatctgctgacagctgaccaccttgaaggggttcatttgaagcattttgatcatcaagctcttgatcatc 100  Q
    |||||| ||||||||| |||| ||||   |||||  |||||||||| ||| || || |  |||||||||| ||||  |||||||||||||||||||  ||    
T  26350018 agggcagagatcctgatgccaaaggcatgggatcaactgacagctggccatctggaggaagttcatttgaggcatgctgatcatcaagctcttgattgtc 26350117  T
Q  101 ttgattagccatgacttgaacatcttcaacattctgagcttcagacacttcaacgttctgagcagcagtggcttcaacattctga 185  Q
    | ||| ||||||||| |||| ||||||| ||||||| |||| ||||||| |||| |||||| || |||  | |||||||||||||    
T  26350118 tcgatcagccatgacatgaatatcttcatcattctgggctttagacactgcaacattctgaccaacagaagtttcaacattctga 26350202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 1 - 185
Target Start/End: Complemental strand, 46505931 - 46505747
Alignment:
Q  1 agggcaaagatcctgaggccagaggcgctggatctgctgacagctgaccaccttgaaggggttcatttgaagcattttgatcatcaagctcttgatcatc 100  Q
    |||||| ||||||||| |||| ||||   |||||  |||||||||| ||| || || |  |||||||||| ||||  |||||||||||||||||||  ||    
T  46505931 agggcagagatcctgatgccaaaggcatgggatcaactgacagctggccatctggaggaagttcatttgaggcatgctgatcatcaagctcttgattgtc 46505832  T
Q  101 ttgattagccatgacttgaacatcttcaacattctgagcttcagacacttcaacgttctgagcagcagtggcttcaacattctga 185  Q
    | ||| ||||||||| |||| ||||||| ||||||| |||| ||||||| |||| |||||| || |||  | |||||||||||||    
T  46505831 tcgatcagccatgacatgaatatcttcatcattctgggctttagacactgcaacattctgaccaacagaagtttcaacattctga 46505747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 246 - 407
Target Start/End: Complemental strand, 44905671 - 44905516
Alignment:
Q  246 ttgaagtcagtgttgatgtcttcaacattcagatcaaacctagttgagaaatccatttgttcttcttgaacttcttcttcaatactcatatttgaagcca 345  Q
    ||||||||| ||||||| ||||||| ||| |||||||| | ||||||||| ||||      | |||||| |||||||||||||  ||||||||||||| |    
T  44905671 ttgaagtcaatgttgatatcttcaatattgagatcaaatccagttgagaactcca------catcttgagcttcttcttcaatgttcatatttgaagcta 44905578  T
Q  346 agagttcaaccacctcttgagtgtcttcatcaacattttgagtattaatctcagtattttct 407  Q
    |||| ||| |||| || ||||| ||| |||||||||| ||||||  || |||||||||||||    
T  44905577 agagctcagccacttcctgagtttctccatcaacattctgagtaccaaactcagtattttct 44905516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 228 - 407
Target Start/End: Original strand, 5383885 - 5384058
Alignment:
Q  228 tcttgaaacacttcattgttgaagtcagtgttgatgtcttcaacattcagatcaaacctagttgagaaatccatttgttcttcttgaacttcttcttcaa 327  Q
    ||||||||||  ||| | ||||||||| ||||||| ||||||| ||| ||||| || | ||||||||| ||||      | |||||| ||||||||||||    
T  5383885 tcttgaaacaactcactattgaagtcaatgttgatatcttcaatattgagatcgaatccagttgagaactcca------catcttgagcttcttcttcaa 5383978  T
Q  328 tactcatatttgaagccaagagttcaaccacctcttgagtgtcttcatcaacattttgagtattaatctcagtattttct 407  Q
    |  ||||||||||||| ||||| ||| |||| || ||||| ||| |||||||||| ||||||  || |||||||||||||    
T  5383979 tgttcatatttgaagctaagagctcagccacttcctgagtttctccatcaacattctgagtaccaaactcagtattttct 5384058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 228 - 407
Target Start/End: Original strand, 26350269 - 26350442
Alignment:
Q  228 tcttgaaacacttcattgttgaagtcagtgttgatgtcttcaacattcagatcaaacctagttgagaaatccatttgttcttcttgaacttcttcttcaa 327  Q
    ||||||||||  ||| | ||||||||| ||||||| ||||||| ||| |||||||| | ||||||||| ||||      | |||||| ||||||||||||    
T  26350269 tcttgaaacaactcactattgaagtcaatgttgatatcttcaatattgagatcaaatccagttgagaactcca------catcttgagcttcttcttcaa 26350362  T
Q  328 tactcatatttgaagccaagagttcaaccacctcttgagtgtcttcatcaacattttgagtattaatctcagtattttct 407  Q
    |  ||||||||||||| ||||| ||| |||| || ||||| ||| |||||| ||| ||||||  || |||||||||||||    
T  26350363 tgttcatatttgaagctaagagctcagccacttcctgagtttctccatcaatattctgagtaccaaactcagtattttct 26350442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 1 - 161
Target Start/End: Complemental strand, 6543061 - 6542901
Alignment:
Q  1 agggcaaagatcctgaggccagaggcgctggatctgctgacagctgaccaccttgaaggggttcatttgaagcattttgatcatcaagctcttgatcatc 100  Q
    |||||| ||||||||| |||| ||||   |||||  |||||||||| ||| || || |  |||||||||| ||||  |||||||||||||||||||  ||    
T  6543061 agggcagagatcctgatgccaaaggcatgggatcaactgacagctggccatctggaggaagttcatttgaggcatgctgatcatcaagctcttgattgtc 6542962  T
Q  101 ttgattagccatgacttgaacatcttcaacattctgagcttcagacacttcaacgttctga 161  Q
    ||||| ||||||||| |||| | ||||| ||||||| |||||||  ||| |||| ||||||    
T  6542961 ttgatcagccatgacatgaataccttcatcattctgggcttcagttactgcaacattctga 6542901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 1 - 185
Target Start/End: Complemental strand, 44905940 - 44905756
Alignment:
Q  1 agggcaaagatcctgaggccagaggcgctggatctgctgacagctgaccaccttgaaggggttcatttgaagcattttgatcatcaagctcttgatcatc 100  Q
    |||||| ||||||||| |||| ||||   |||||  |||||||||| ||| || || |  |||||||||| ||||  ||| |||||||||||||||  ||    
T  44905940 agggcagagatcctgatgccaaaggcatgggatcaactgacagctggccatctggaggaagttcatttgaggcatgctgagcatcaagctcttgattgtc 44905841  T
Q  101 ttgattagccatgacttgaacatcttcaacattctgagcttcagacacttcaacgttctgagcagcagtggcttcaacattctga 185  Q
    | ||| || |||||| |||| ||||||| ||||||| |||| ||||||| |||| |||||| || |||  | |||||||||||||    
T  44905840 tcgatcagtcatgacatgaatatcttcatcattctgggctttagacactgcaacattctgaccaacagaagtttcaacattctga 44905756  T

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Target: chr7; HSP #15
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 311 - 415
Target Start/End: Original strand, 9537097 - 9537202
Alignment:
Q  311 ttgaacttcttcttcaatactcatatttgaagccaagagttcaaccacctcttgagtgtcttcatcaacattttgagtattaatctcagta-ttttcttc 409  Q
    |||| ||||||||||| | ||||| |||||||| ||||| ||| |||| || ||||| |||||||||||||| ||||||| || |||| || ||||||||    
T  9537097 ttgagcttcttcttcagtgctcatgtttgaagctaagagctcagccacttcctgagtttcttcatcaacattatgagtatcaaactcaatatttttcttc 9537196  T
Q  410 aactct 415  Q
    ||||||    
T  9537197 aactct 9537202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 61 - 141
Target Start/End: Complemental strand, 32107193 - 32107113
Alignment:
Q  61 gttcatttgaagcattttgatcatcaagctcttgatcatcttgattagccatgacttgaacatcttcaacattctgagctt 141  Q
    |||||||||| ||||  |||||||||||||||||||  ||||||| ||||||||| |||| ||||||| ||||||| ||||    
T  32107193 gttcatttgaggcatgctgatcatcaagctcttgattgtcttgatcagccatgacatgaatatcttcatcattctgggctt 32107113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 246 - 380
Target Start/End: Complemental strand, 6542792 - 6542664
Alignment:
Q  246 ttgaagtcagtgttgatgtcttcaacattcagatcaaacctagttgagaaatccatttgttcttcttgaacttcttcttcaatactcatatttgaagcca 345  Q
    ||||||||| ||||||| ||||||| ||| |||||||| | ||||||||| ||||      | |||||| |||||||||||||  ||||||||||||| |    
T  6542792 ttgaagtcaatgttgatatcttcaatattgagatcaaaaccagttgagaactcca------catcttgagcttcttcttcaatgttcatatttgaagcta 6542699  T
Q  346 agagttcaaccacctcttgagtgtcttcatcaaca 380  Q
    |||| ||| |||| || ||||| ||| ||||||||    
T  6542698 agagctcagccacttcctgagtttctccatcaaca 6542664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 8 - 136
Target Start/End: Original strand, 9536894 - 9537021
Alignment:
Q  8 agatcctgaggccagaggcgctggatctgctgacagctgaccaccttgaaggggttcatttgaagcattttgatcatcaagctcttgatcatcttgatta 107  Q
    ||||||||| |||| ||||  ||||||  || ||||||| |||  | || || |||||||||| ||||  ||||||||||||||| |||  ||||||| |    
T  9536894 agatcctgatgccaaaggcattggatcaactaacagctggccatttggagggagttcatttgaggcatgctgatcatcaagctctagattgtcttgatca 9536993  T
Q  108 gccatgacttgaacatcttcaacattctg 136  Q
    |||||||  |||||||||||| |||||||    
T  9536994 gccatga-atgaacatcttcatcattctg 9537021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277 (Bit Score: 64; Significance: 8e-28; HSPs: 2)
Name: scaffold0277
Description:

Target: scaffold0277; HSP #1
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 30 - 185
Target Start/End: Original strand, 21048 - 21203
Alignment:
Q  30 ggatctgctgacagctgaccaccttgaaggggttcatttgaagcattttgatcatcaagctcttgatcatcttgattagccatgacttgaacatcttcaa 129  Q
    ||||| ||||||||||| ||| || || || |||||||||| ||||  ||||| ||||||||||| |  ||||||| ||||||| | ||||||||||||     
T  21048 ggatcagctgacagctggccatctagagggagttcatttgaggcatgctgatcgtcaagctcttggttgtcttgatcagccatggcatgaacatcttcat 21147  T
Q  130 cattctgagcttcagacacttcaacgttctgagcagcagtggcttcaacattctga 185  Q
    ||||||| |||||||||||  |||| ||||||||||||| || |||||||||||||    
T  21148 cattctgggcttcagacacagcaacattctgagcagcagaggtttcaacattctga 21203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 228 - 415
Target Start/End: Original strand, 21270 - 21451
Alignment:
Q  228 tcttgaaacacttcattgttgaagtcagtgttgatgtcttcaacattcagatcaaacctagttgagaaatccatttgttcttcttgaacttcttcttcaa 327  Q
    ||||||||||||||| ||||||||| | ||||||| ||||||| ||| |||||||| | |||||||||  |||      | ||||||  |||||||||||    
T  21270 tcttgaaacacttcactgttgaagttaatgttgatatcttcaatattgagatcaaatccagttgagaacacca------cgtcttgagtttcttcttcaa 21363  T
Q  328 tactcatatttgaagccaagagttcaaccacctcttgagtgtcttcatcaacattttgagtattaatctcagtattttcttcaactct 415  Q
    |  |||||||||| || ||||  ||| |||| || ||||| |||||||||||||| ||| ||| || |||| ||||||||||||||||    
T  21364 tgttcatatttgaggctaagatctcagccacttcctgagtttcttcatcaacattctgaatatcaaactcaatattttcttcaactct 21451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 63; Significance: 3e-27; HSPs: 2)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 61 - 183
Target Start/End: Original strand, 311733 - 311855
Alignment:
Q  61 gttcatttgaagcattttgatcatcaagctcttgatcatcttgattagccatgacttgaacatcttcaacattctgagcttcagacacttcaacgttctg 160  Q
    |||||||||| ||||  |||||||||||||||||||  ||||||| ||||||||| |||||||||||| ||||||| ||||||| |||| |||| |||||    
T  311733 gttcatttgaggcatgctgatcatcaagctcttgattgtcttgatcagccatgacatgaacatcttcatcattctgggcttcagtcactgcaacattctg 311832  T
Q  161 agcagcagtggcttcaacattct 183  Q
    ||||||||  | |||||||||||    
T  311833 agcagcagaagtttcaacattct 311855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 309 - 415
Target Start/End: Original strand, 311999 - 312105
Alignment:
Q  309 tcttgaacttcttcttcaatactcatatttgaagccaagagttcaaccacctcttgagtgtcttcatcaacattttgagtattaatctcagtattttctt 408  Q
    |||||| ||||||||||||| ||||| |||||||| ||||| ||| |||| || ||||  |||||||||||||| ||||||| || |||| |||||||||    
T  311999 tcttgagcttcttcttcaatgctcatgtttgaagctaagagctcagccacttcctgagcttcttcatcaacattctgagtatcaaactcaatattttctt 312098  T
Q  409 caactct 415  Q
    |||||||    
T  312099 caactct 312105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0254 (Bit Score: 49; Significance: 7e-19; HSPs: 2)
Name: scaffold0254
Description:

Target: scaffold0254; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 1 - 161
Target Start/End: Original strand, 9734 - 9894
Alignment:
Q  1 agggcaaagatcctgaggccagaggcgctggatctgctgacagctgaccaccttgaaggggttcatttgaagcattttgatcatcaagctcttgatcatc 100  Q
    |||||| ||||||||| |||| ||||   |||||  |||||||||| ||| || || |  |||||||||| ||||  |||||||||||||||||||  ||    
T  9734 agggcagagatcctgatgccaaaggcatgggatcaactgacagctggccatctggaggaagttcatttgaggcatgctgatcatcaagctcttgattgtc 9833  T
Q  101 ttgattagccatgacttgaacatcttcaacattctgagcttcagacacttcaacgttctga 161  Q
    ||||| ||||||||| |||| ||||||| ||||||| |||||||  ||| |||| ||||||    
T  9834 ttgatcagccatgacatgaatatcttcatcattctgggcttcagttactgcaacattctga 9894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0254; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 228 - 380
Target Start/End: Original strand, 9985 - 10131
Alignment:
Q  228 tcttgaaacacttcattgttgaagtcagtgttgatgtcttcaacattcagatcaaacctagttgagaaatccatttgttcttcttgaacttcttcttcaa 327  Q
    ||||||||||  ||| | ||||||||| ||||||| ||||||| ||| |||||||| | ||||||||| ||||      | |||||| ||||||||||||    
T  9985 tcttgaaacaactcactattgaagtcaatgttgatatcttcaatattgagatcaaatccagttgagaactcca------catcttgagcttcttcttcaa 10078  T
Q  328 tactcatatttgaagccaagagttcaaccacctcttgagtgtcttcatcaaca 380  Q
    |  ||||||||||||| ||||| ||| |||| || ||||| ||| ||||||||    
T  10079 tgttcatatttgaagctaagagctcagccacttcctgagtttctccatcaaca 10131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0213 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0213
Description:

Target: scaffold0213; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 231 - 295
Target Start/End: Complemental strand, 20698 - 20634
Alignment:
Q  231 tgaaacacttcattgttgaagtcagtgttgatgtcttcaacattcagatcaaacctagttgagaa 295  Q
    |||||||||||||| ||||||||||||||||  |||||||  || |||||||||| |||||||||    
T  20698 tgaaacacttcatttttgaagtcagtgttgagatcttcaatgttgagatcaaacccagttgagaa 20634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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