View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8616_high_3 (Length: 400)
Name: NF8616_high_3
Description: NF8616
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8616_high_3 |
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Alignment Details
Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 194 - 274
Target Start/End: Original strand, 41872152 - 41872230
Alignment:
| Q |
194 |
ccttacactctatctgctcccgaaagcgcatctgcagaccgctaattcctcatacacagacggggtaagaattgcttatta |
274 |
Q |
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| T |
41872152 |
ccttacactccatctgatcccgaaagcgcatttgtagatcgttaattcctcatacac--acagggtaataattgcttatta |
41872230 |
T |
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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 276 - 339
Target Start/End: Original strand, 41872328 - 41872395
Alignment:
| Q |
276 |
agacagacgagattcaatagcgaaagaaata----cctcaactccaagagcagcggataatataactc |
339 |
Q |
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| T |
41872328 |
agactgacgagattcaatagcgaaacaaatatatacctcaactccaagagtagcagataatataactc |
41872395 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 285 - 323
Target Start/End: Complemental strand, 50183133 - 50183095
Alignment:
| Q |
285 |
agattcaatagcgaaagaaatacctcaactccaagagca |
323 |
Q |
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| T |
50183133 |
agattcaataacgaaagaaatacctcaactccaagagca |
50183095 |
T |
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