View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8616_high_6 (Length: 250)
Name: NF8616_high_6
Description: NF8616
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8616_high_6 |
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Alignment Details
Target: chr6 (Bit Score: 77; Significance: 8e-36; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 149 - 245
Target Start/End: Complemental strand, 26878054 - 26877958
Alignment:
| Q |
149 |
tagaagataagattaaatcaatatttcagaagaaggattttctttcccaattaaaaatcatatgacattgtgagagatacataatttagtacattaa |
245 |
Q |
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| T |
26878054 |
tagaagataaaattaaatcaatatttcagaagaaggattttctttcccaattagaaatcttatgacattgcgagagatacataatttagtgcattaa |
26877958 |
T |
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Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 33 - 92
Target Start/End: Original strand, 27588459 - 27588518
Alignment:
| Q |
33 |
tggtttcctgacaatatacagtgaaagaagaatgaaaacttagtttatatttagagaaaa |
92 |
Q |
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| T |
27588459 |
tggtttcctgacaatatacagtcaaagaagaatgaatacttggtttataaatagagaaaa |
27588518 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 33 - 111
Target Start/End: Complemental strand, 5083151 - 5083071
Alignment:
| Q |
33 |
tggtttcctgacaatatacagtgaaagaagaa-tgaaaacttagtttatattta-gagaaaagtttcataaattaccaaca |
111 |
Q |
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| T |
5083151 |
tggttttctgtcaatgtacagtaaaagaagaaatgaatgcttagtttatagttaagagaaaagttgcaaaaattaccaaca |
5083071 |
T |
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