View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8616_low_1 (Length: 592)
Name: NF8616_low_1
Description: NF8616
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8616_low_1 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 479; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 479; E-Value: 0
Query Start/End: Original strand, 19 - 581
Target Start/End: Complemental strand, 53488682 - 53488122
Alignment:
| Q |
19 |
aaacagattggaatcaagctccatttactgcttcttttaggaacttcaaagccaatggttgtgttttgtccaatggaatttcttcttgcaaatccaactc |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53488682 |
aaacagattggaatcaagctccatttactgcttcttttaggaacttcaaagccaatggttgtgttttgtccaatggaatttcttcttgcaaatccaactc |
53488583 |
T |
|
| Q |
119 |
ttcttctgacaatgcttggttgtatcaacaactggattctacaaatcagaaaagactcaaatgggtccagaagaattacatgatttacaattattgcaat |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
53488582 |
ttcttctgacaatgcttggttgtatcaacaactggattctacaaatcagaaaagactcaaatgggtccagaagaattacatgatttacaattactgcaat |
53488483 |
T |
|
| Q |
219 |
gaccttaaacgattccctcagggtcttcctctagaatgcattgtccgtaccaactcataagaattaagaggagtacaacttttaatagtttattacttgt |
318 |
Q |
| |
|
|||||||||||||||||||||||||| ||| | ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||| |
|
|
| T |
53488482 |
gaccttaaacgattccctcagggtctccctttggaatgcattgtccgtaccaactcataagaattaagaggagtacaacttttactagtttattacctgt |
53488383 |
T |
|
| Q |
319 |
aacatatgtgtgcannnnnnnnnaaccatctttcgattgccatcattctttaagctatgtcatttgagttattattatgttcaaaaatattggaagcatt |
418 |
Q |
| |
|
|| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53488382 |
aaaatatgtgtgca-ttttttttaaccatctttcgattgccatcattctttaagctatgtcatttgagttattattatgttcaaaaatattggaagcatt |
53488284 |
T |
|
| Q |
419 |
ttaacaactactcaaattagtaaaaccaaggaattttagcagcattcttaaaagcatgcaccaccaaagttgaatcggtttctatccacaaattgtgcca |
518 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
53488283 |
ttaacaactactcaaattaataaaaccaaggaattttagcagcattcttaaaagcatgcatcaccaaagttgaatcggtttctatccac-aattgtgcca |
53488185 |
T |
|
| Q |
519 |
ataatggtgataagctatttcaattactattaaactccttgaaatctctgcatgtaaagtatt |
581 |
Q |
| |
|
|| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53488184 |
atgatggtgataagctatttcaatcactattaaactccttgaaatctctgcatgtaaagtatt |
53488122 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 174 - 258
Target Start/End: Original strand, 53493228 - 53493312
Alignment:
| Q |
174 |
ctcaaatgggtccagaagaattacatgatttacaattattgcaatgaccttaaacgattccctcagggtcttcctctagaatgca |
258 |
Q |
| |
|
||||| ||||| ||||||||||||||||| || ||||| |||| ||| ||| |||| |||||||||||||||| |||||||| |
|
|
| T |
53493228 |
ctcaagtgggttcagaagaattacatgatctataattactgcagtgataacaaaagatttcctcagggtcttcctcaagaatgca |
53493312 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 186 - 221
Target Start/End: Original strand, 53495584 - 53495619
Alignment:
| Q |
186 |
cagaagaattacatgatttacaattattgcaatgac |
221 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||| |
|
|
| T |
53495584 |
cagaagaattacatgatttacaattattgcactgac |
53495619 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 178 - 216
Target Start/End: Original strand, 52591272 - 52591310
Alignment:
| Q |
178 |
aatgggtccagaagaattacatgatttacaattattgca |
216 |
Q |
| |
|
||||||| || |||||||||||||||||||||||||||| |
|
|
| T |
52591272 |
aatgggtgcaaaagaattacatgatttacaattattgca |
52591310 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 177 - 217
Target Start/End: Original strand, 53502660 - 53502700
Alignment:
| Q |
177 |
aaatgggtccagaagaattacatgatttacaattattgcaa |
217 |
Q |
| |
|
|||||||| ||||||||||||||||| |||||||| ||||| |
|
|
| T |
53502660 |
aaatgggtgcagaagaattacatgatatacaattactgcaa |
53502700 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 151 - 259
Target Start/End: Original strand, 37189131 - 37189239
Alignment:
| Q |
151 |
tggattctacaaatcagaaaagactcaaatgggtccagaagaattacatgatttacaattattgcaatgaccttaaacgattccctcagggtcttcctct |
250 |
Q |
| |
|
|||||||||||| ||| | || ||||| ||||| ||||||||||| ||||| ||||| || |||| ||| ||| |||| |||||||||||||||| |
|
|
| T |
37189131 |
tggattctacaagtcatgagaggctcaagtgggtgcagaagaattatatgatctacaactactgcactgataccaaaagatttcctcagggtcttcctca |
37189230 |
T |
|
| Q |
251 |
agaatgcat |
259 |
Q |
| |
|
||||||||| |
|
|
| T |
37189231 |
agaatgcat |
37189239 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University