View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8616_low_11 (Length: 278)
Name: NF8616_low_11
Description: NF8616
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8616_low_11 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 238; Significance: 1e-132; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 1 - 267
Target Start/End: Complemental strand, 43217364 - 43217103
Alignment:
| Q |
1 |
agtgatattcgttggtgtccaccctctgcttagtggctaaaactcaatattgatggtgttgttcatcatctatatggcaaagcttcttgtggaggtttgc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43217364 |
agtgatattcgttggtgtccaccctctgcttagtggctaaaactcaatattgatggtgttgttcatcatctatatggcaaagcttcttgtggaggtttgc |
43217265 |
T |
|
| Q |
101 |
ttagggatcgtaccgatgctttcatcagaagtttcagtgaaaatctcggttgttgtaccacttttgcttcacagctctaggaatctatatgtgaatgaag |
200 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
43217264 |
ttagggatcgtaccgat-ctttcatcagaagtttcagtgaaaatctcggttgttgtaccacttttgcttcacagctctagg----gatatgtgaatgaag |
43217170 |
T |
|
| Q |
201 |
cttgcgcatcagaggggttttgatagtataaatggtgaaagtgactctcttaccgttattcatctca |
267 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43217169 |
cttgcgcatcagaggggttttgatagtataaatggtgaaagtgactctcttaccgttattcatctca |
43217103 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University