View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8616_low_12 (Length: 258)
Name: NF8616_low_12
Description: NF8616
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8616_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 229; Significance: 1e-126; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 163325 - 163565
Alignment:
| Q |
1 |
tgagatatattgcaataagttgagataacaaggtcgtttagcatgatcaaaaagtaaatggtatgcttaaaatagaaaaaggcgttttaagtgttgaaga |
100 |
Q |
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| T |
163325 |
tgagatatatagcaataagttgagataacaaggtcgtttagcatgatcaaaaagtaaatggtatgcttaaaatagaaaaaggcgttttaagtgttgaaga |
163424 |
T |
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| Q |
101 |
tgaatggtaataggtttgtgcatgaattgagaaagcttgttgatgttgactgataagtcaggaaggttgggatttcaatgttgaagagcaccaattattt |
200 |
Q |
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| T |
163425 |
tgaatggtaataggtttgtgcatgaattgagaaagcttgttgatgttgactgataagtcaggaaggttgggatttaaatgttgaagagcaccaattattt |
163524 |
T |
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| Q |
201 |
gcctatatatggtggagttggtggatactgaagcatcatgt |
241 |
Q |
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| T |
163525 |
gcctatatgtggtggagttggtggatactgaagcatcatgt |
163565 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 86 - 144
Target Start/End: Original strand, 40113122 - 40113180
Alignment:
| Q |
86 |
tttaagtgttgaagatgaatggtaataggtttgtgcatgaattgagaaagcttgttgat |
144 |
Q |
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| T |
40113122 |
tttaaatgttgaagatgaagggatataggtttatgcatgaattgggagagcttgttgat |
40113180 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 113 - 145
Target Start/End: Original strand, 654274 - 654306
Alignment:
| Q |
113 |
ggtttgtgcatgaattgagaaagcttgttgatg |
145 |
Q |
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| T |
654274 |
ggtttgtacatgaattgagaaagcttgttgatg |
654306 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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