View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8616_low_15 (Length: 241)
Name: NF8616_low_15
Description: NF8616
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8616_low_15 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 169; Significance: 9e-91; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 9477408 - 9477637
Alignment:
| Q |
1 |
tttctgctttcacaatgaaatcaattctaaacccaaagttttcatctttatcttgcaatttccccaaannnnnnnnnnnnnnnnnnntttcacatcctcg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
9477408 |
tttctgctttcacaatgaaatcaattctaaacccaaagttttcatctttatcttgcaatttccccaaactctcttctttctctctcttttcacatcctct |
9477507 |
T |
|
| Q |
101 |
tcaattctcaatccttttccgtaacaacccatcttcattttccaaccctcttcgcctcaactcaacaaaaccctttattcccaattctcaaaatcgaacc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9477508 |
tcaattctcaatccttttccgtaacaacccatcttcattttccaaccctcttcgcctcaactcaacaaaaccctttattcccaattctcaaaatcgaacc |
9477607 |
T |
|
| Q |
201 |
tttcaagcttcatcatctacttctggtgat |
230 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
9477608 |
tttcaagcttcatcatctacttctggtgat |
9477637 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University