View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8616_low_16 (Length: 224)

Name: NF8616_low_16
Description: NF8616
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8616_low_16
NF8616_low_16
[»] chr6 (6 HSPs)
chr6 (1-218)||(1414295-1414512)
chr6 (1-218)||(1419844-1420058)
chr6 (72-218)||(1410990-1411136)
chr6 (73-208)||(1408109-1408244)
chr6 (1-71)||(1410895-1410965)
chr6 (1-62)||(1408019-1408080)
[»] chr8 (2 HSPs)
chr8 (73-198)||(3600507-3600632)
chr8 (73-198)||(14339374-14339499)


Alignment Details
Target: chr6 (Bit Score: 210; Significance: 1e-115; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 218
Target Start/End: Original strand, 1414295 - 1414512
Alignment:
Q  1 atgaggttaattcatgtactttggtgtttcaacctgtatgtgacatgtaaatttattcaagtttcaagtgacaaatgtgtgtaccctgcaatttataact 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1414295 atgaggttaattcatgtactttggtgtttcaacctgtatgtgacatgtaaatttattcaagtttcaagtgacaaatgtgtgtaccctgcaatttataact 1414394  T
Q  101 ttggtgactcaaattcagatactggaactatatatgcaacatatacaagtgttcaacctcctaatggaataagcttctttggaaacatatcaggaagagc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1414395 ttggtgactcaaattcagatactggaactatatatgcaacatatacaagtgttcaacctcctaatggaataagcttctttggaaacatatcaggaagagc 1414494  T
Q  201 ttctgatgtccatctcat 218  Q
    |||||||| || ||||||    
T  1414495 ttctgatggccgtctcat 1414512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 1 - 218
Target Start/End: Original strand, 1419844 - 1420058
Alignment:
Q  1 atgaggttaattcatgtactttggtgtttcaacctgtatgtgacatgtaaatttattcaagtttcaagtgacaaatgtgtgtaccctgcaatttataact 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |  |||||||||||||||||||||||||||    
T  1419844 atgaggttaattcatgtactttggtgtttcaacctgtatgtgacatgtacatttattcaagtttcaagtcatgaatgtgtgtaccctgcaatttataact 1419943  T
Q  101 ttggtgactcaaattcagatactggaactatatatgcaacatatacaagtgttcaacctcctaatggaataagcttctttggaaacatatcaggaagagc 200  Q
    |||||||||||||||||||||||||||||  ||||||||| |    | ||  ||||||||||||||| |||||   |||||||||||||||||| |||||    
T  1419944 ttggtgactcaaattcagatactggaactgcatatgcaactttcttatgtaatcaacctcctaatggcataag---ctttggaaacatatcagggagagc 1420040  T
Q  201 ttctgatgtccatctcat 218  Q
    |||||||| || ||||||    
T  1420041 ttctgatggccgtctcat 1420058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 107; E-Value: 8e-54
Query Start/End: Original strand, 72 - 218
Target Start/End: Original strand, 1410990 - 1411136
Alignment:
Q  72 caaatgtgtgtaccctgcaatttataactttggtgactcaaattcagatactggaactatatatgcaacatatacaagtgttcaacctcctaatggaata 171  Q
    |||||||||||||||||||||||||||||||||||| |||||||| ||||| |||||| |||||||||||| |||| |||||||| ||||||| ||||||    
T  1410990 caaatgtgtgtaccctgcaatttataactttggtgattcaaattcggataccggaactgtatatgcaacatttacaggtgttcaatctcctaacggaata 1411089  T
Q  172 agcttctttggaaacatatcaggaagagcttctgatgtccatctcat 218  Q
    ||||||||||||||||||||||||||||||||||||| || ||||||    
T  1411090 agcttctttggaaacatatcaggaagagcttctgatggccgtctcat 1411136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 73 - 208
Target Start/End: Original strand, 1408109 - 1408244
Alignment:
Q  73 aaatgtgtgtaccctgcaatttataactttggtgactcaaattcagatactggaactatatatgcaacatatacaagtgttcaacctcctaatggaataa 172  Q
    ||||||| ||||||||||||||| || ||||||||||||||||||||||||||| |   | |||||| ||| |||  ||||   ||||||||||| ||||    
T  1408109 aaatgtgagtaccctgcaatttacaattttggtgactcaaattcagatactggagcagcaaatgcaatatacacagctgttacgcctcctaatggtataa 1408208  T
Q  173 gcttctttggaaacatatcaggaagagcttctgatg 208  Q
    ||| |||||||| ||   ||||||||||||||||||    
T  1408209 gctactttggaagcaccacaggaagagcttctgatg 1408244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 1410895 - 1410965
Alignment:
Q  1 atgaggttaattcatgtactttggtgtttcaacctgtatgtgacatgtaaatttattcaagtttcaagtga 71  Q
    |||||| |||||||| |||||||||||||||| || |||||| |||||| |||||||||||| ||||||||    
T  1410895 atgaggctaattcatatactttggtgtttcaatctttatgtggcatgtacatttattcaagtctcaagtga 1410965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 1408019 - 1408080
Alignment:
Q  1 atgaggttaattcatgtactttggtgtttcaacctgtatgtgacatgtaaatttattcaagt 62  Q
    ||||| ||||||||||||||||||| |||||| |||| |||||||| || ||| ||||||||    
T  1408019 atgagattaattcatgtactttggtttttcaatctgtgtgtgacatttacattcattcaagt 1408080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 46; Significance: 2e-17; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 73 - 198
Target Start/End: Original strand, 3600507 - 3600632
Alignment:
Q  73 aaatgtgtgtaccctgcaatttataactttggtgactcaaattcagatactggaactatatatgcaacatatacaagtgttcaacctcctaatggaataa 172  Q
    |||||||| ||||| ||||| || |||||||||||||| ||||||||||||||| ||  ||||||||||    ||  |||| | | ||||||||| ||||    
T  3600507 aaatgtgtctacccagcaatatacaactttggtgactccaattcagatactggagctggatatgcaacaatggcagctgttgagcatcctaatggtataa 3600606  T
Q  173 gcttctttggaaacatatcaggaaga 198  Q
    |||||||||||| ||| |||||||||    
T  3600607 gcttctttggaagcatctcaggaaga 3600632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 73 - 198
Target Start/End: Original strand, 14339374 - 14339499
Alignment:
Q  73 aaatgtgtgtaccctgcaatttataactttggtgactcaaattcagatactggaactatatatgcaacatatacaagtgttcaacctcctaatggaataa 172  Q
    |||||||| ||||| ||||| || |||||||||||||| ||||||||||||||| ||  ||||||||||    ||  |||| |   ||||||||| ||||    
T  14339374 aaatgtgtctacccagcaatatacaactttggtgactccaattcagatactggagctggatatgcaacaacggcagctgttgagtatcctaatggtataa 14339473  T
Q  173 gcttctttggaaacatatcaggaaga 198  Q
    |||||||||||| ||| |||||||||    
T  14339474 gcttctttggaagcatctcaggaaga 14339499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University