View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8616_low_17 (Length: 223)
Name: NF8616_low_17
Description: NF8616
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8616_low_17 |
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Alignment Details
Target: chr2 (Bit Score: 148; Significance: 3e-78; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 12 - 208
Target Start/End: Original strand, 40546422 - 40546628
Alignment:
| Q |
12 |
taatactaacattattaatttaatnnnnnnnnttgcatcctaacatattttaaccgaattgtttgtatgcaatatacttcatcaaattattgctcaaggt |
111 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40546422 |
taatactaacattattaatttaataaaaaaaattgcatcctaacatattttaaccgaattgtttgtatgcaatatacttcatcaaattattgctcaaggt |
40546521 |
T |
|
| Q |
112 |
tgaaggtaactaatgatcaatacattgaagagatat----------agagagagaaacaaaagatgttcgtggagaagagaactttgaatcctaattaag |
201 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40546522 |
tgaaggtaactaatgatcaatacattgaagagatatatagagagagagagagagaaacaaaagatgttcgtggagaagagaactttgaatcctaattaag |
40546621 |
T |
|
| Q |
202 |
ttggatt |
208 |
Q |
| |
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||||||| |
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| T |
40546622 |
ttggatt |
40546628 |
T |
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