View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8616_low_3 (Length: 506)
Name: NF8616_low_3
Description: NF8616
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8616_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 446; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 446; E-Value: 0
Query Start/End: Original strand, 13 - 494
Target Start/End: Original strand, 19171141 - 19171622
Alignment:
| Q |
13 |
tggacatcagcaataataggagcagcatcagcagtagcagcaacatcaattctctcagcaaaaccaaaagacccaacattccatctcatctccatcaact |
112 |
Q |
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| T |
19171141 |
tggacatcagcaataataggagcagcatcagcagtagcagcaacatcaattctctcagcaaaaccaaaagacccaacatttcatctcatctccatcaact |
19171240 |
T |
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| Q |
113 |
tcacctccttaaaaccaagcctccccgttgtagacgcagaagttcttctaactgtccatgtcaccaatccaaacatagccccaattaactactcatcaac |
212 |
Q |
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|||| ||||||||||||||||||||||| |||||||||||||||||| |||| |||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
19171241 |
tcacttccttaaaaccaagcctccccgtcgtagacgcagaagttcttttaaccgtccatgtcaccaatccaaacatagctccaattaactactcatcaac |
19171340 |
T |
|
| Q |
213 |
aaccatgtcaattttctacgaaggttctctcctcggttcagctccggtccaagccgggtctcagccaccgaggtcatgtcagttactgagacttccggct |
312 |
Q |
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| T |
19171341 |
aaccatgtcaattttctacgaaggttctctcctcggttcagctccggtccaagccgggtctcagccaccgaggtcatgtcagttactgagacttcctgcc |
19171440 |
T |
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| Q |
313 |
cggcttaaagctcttcggctcgcgaaacacgcgagccgagtaatgtctgacgtggcgaaaagggagatggttcttgatgcggctgttgatattgctggca |
412 |
Q |
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| T |
19171441 |
cggcttaaagctcttcggctcgcgaaacacgcgagccgagtaatgtctgacgtggcgaaaagggagatggttcttgatgcagctgttgatattgctggca |
19171540 |
T |
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| Q |
413 |
ccgctagagttttgtggtgggaccataagtttaaagtgagagttaatagtcatattactgttgatcctgtttttcttgatgt |
494 |
Q |
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| T |
19171541 |
ccgctagagttttgtggtgggaccataagtttaaagtgagagttaatagtcatattactgttgatcctgtttttcttgatgt |
19171622 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 442 - 494
Target Start/End: Original strand, 43762641 - 43762693
Alignment:
| Q |
442 |
tttaaagtgagagttaatagtcatattactgttgatcctgtttttcttgatgt |
494 |
Q |
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|||||||||||||| |||| |||| |||||||||||||||||||||||||||| |
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| T |
43762641 |
tttaaagtgagagtaaatattcatgttactgttgatcctgtttttcttgatgt |
43762693 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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