View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8616_low_4 (Length: 490)
Name: NF8616_low_4
Description: NF8616
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8616_low_4 |
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| [»] chr1 (1 HSPs) |
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| [»] scaffold0082 (1 HSPs) |
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| [»] scaffold0094 (1 HSPs) |
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| [»] scaffold0187 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 421; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 421; E-Value: 0
Query Start/End: Original strand, 5 - 490
Target Start/End: Complemental strand, 37882609 - 37882127
Alignment:
| Q |
5 |
acgagcagaacctgtgttgtattgcaacaaccttcacagtcttcatataaaacgtttattgataatcatcnnnnnnnnatttcatagattagagaaaatt |
104 |
Q |
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| T |
37882609 |
acgagcagcaactgtgttgtattgcaacaaccttcacagtcttcatataaaacgtttattgataatcatcttttt---atttcatagattagagaaaatt |
37882513 |
T |
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| Q |
105 |
ttaacaagttaaggatattaagagatagtgagttggaaacaagggaaacttggtcttttcggtgttctcttaaaaacacgcgggcgtactccttgcttct |
204 |
Q |
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| T |
37882512 |
ttaacaagttaaggatattaagagatagtgagttggaaacaagggaaacttggttttttcggtgttctcttaaaaacacgcgggcgtactccttgcttct |
37882413 |
T |
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| Q |
205 |
ggggacattgatccaaagctcgagtacggtccgtgcgccgtttttcttctcgaccatgaccaatgtcaatgtggtaccatcccgtttttggttcccattg |
304 |
Q |
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| T |
37882412 |
ggggacattgatccgaagctcgagtacggtccgtgcgccgtttttcttctctaccatgaccaatgtcaatgtggtaccctcccgtttttggttcccattg |
37882313 |
T |
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| Q |
305 |
ggtttaccttgattacaggtcgaccccatggcaggagattttggaggaagagaggagatatagtatttcacgttgcagtacacattacaacagccacatt |
404 |
Q |
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| T |
37882312 |
ggtttaccttgtttacaggtcgaccccatggcaggagattttggaagaggagaggagatatagtatttcacgttgcagtacacattacaacagccacatt |
37882213 |
T |
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| Q |
405 |
gttcataatcacaatagtagcggtcatgactgcatccaccactgcaagttcgcaaccacaatctgtgttttgataactatgatctc |
490 |
Q |
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| T |
37882212 |
gttcataatcacaatagtagcggtcatgactgcatccaccactgcaagttcgcaaccacaatctgtgttttgataactatgatctc |
37882127 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0082 (Bit Score: 99; Significance: 1e-48; HSPs: 1)
Name: scaffold0082
Description:
Target: scaffold0082; HSP #1
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 154 - 264
Target Start/End: Original strand, 14752 - 14862
Alignment:
| Q |
154 |
ttggtcttttcggtgttctcttaaaaacacgcgggcgtactccttgcttctggggacattgatccaaagctcgagtacggtccgtgcgccgtttttcttc |
253 |
Q |
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| T |
14752 |
ttggttttttcggtgttctcttaaaaacacgcgggcgtactccttgcttctggggacattgatccgaagctcgagtacggtccgtgcgccgtttttcttc |
14851 |
T |
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| Q |
254 |
tcgaccatgac |
264 |
Q |
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| T |
14852 |
tctaccatgac |
14862 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0094 (Bit Score: 59; Significance: 9e-25; HSPs: 1)
Name: scaffold0094
Description:
Target: scaffold0094; HSP #1
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 264 - 334
Target Start/End: Original strand, 41833 - 41903
Alignment:
| Q |
264 |
ccaatgtcaatgtggtaccatcccgtttttggttcccattgggtttaccttgattacaggtcgaccccatg |
334 |
Q |
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| T |
41833 |
ccaatatcaatgtggtaccctcccgtttttggttcccattgggtttaccttgtttacaggtcgaccccatg |
41903 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 51; Significance: 5e-20; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 169 - 263
Target Start/End: Original strand, 17604524 - 17604618
Alignment:
| Q |
169 |
ttctcttaaaaacacgcgggcgtactccttgcttctggggacattgatccaaagctcgagtacggtccgtgcgccgtttttcttctcgaccatga |
263 |
Q |
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| T |
17604524 |
ttctcttaaaaacaatcgggcatactctttgcttatggggacattgatctgaagctcgagtacggtctatgtgccgtttttcttctctaccatga |
17604618 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 219 - 264
Target Start/End: Original strand, 51195790 - 51195835
Alignment:
| Q |
219 |
aaagctcgagtacggtccgtgcgccgtttttcttctcgaccatgac |
264 |
Q |
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| T |
51195790 |
aaagctggagtacggtccgtgcgcggtttttcttctctaccatgac |
51195835 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0187 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0187
Description:
Target: scaffold0187; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 393 - 443
Target Start/End: Original strand, 6264 - 6314
Alignment:
| Q |
393 |
aacagccacattgttcataatcacaatagtagcggtcatgactgcatccac |
443 |
Q |
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| T |
6264 |
aacaaccacaatgttcataatcacaatagtagcggtcttgattgcaaccac |
6314 |
T |
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