View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8616_low_6 (Length: 408)
Name: NF8616_low_6
Description: NF8616
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8616_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 205; Significance: 1e-112; HSPs: 9)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 17 - 241
Target Start/End: Original strand, 47919764 - 47919983
Alignment:
| Q |
17 |
agcaatcagcaaggagaaaagaagtgaggagagtgatgagtgagaagagtatgagaacaatacaccctgcaatccagcccaattgtgcaacagcccatgc |
116 |
Q |
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| T |
47919764 |
agcaatcagcaaggagaaaagaagtgaggagagtgatgagtgagaagagtatgagaacaatacaccctgcaatccagcccaattgtgcaacagcccatgc |
47919863 |
T |
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| Q |
117 |
caatgacaacactccagatcctatcacagcagtcactatgtgtgcactcgcagttacccatgatccttcatgcacataaaattatccatgttaaaataac |
216 |
Q |
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| T |
47919864 |
caatgacaacactccagatcctatcacagcagtcactatgtgtgcactcgcagttacccatgatccttcatgcacataaaattatccatgttaaaataac |
47919963 |
T |
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| Q |
217 |
aagctaagtaactagattacttgac |
241 |
Q |
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|||||||||||||||||||| |
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| T |
47919964 |
-----aagtaactagattacttgac |
47919983 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 17 - 187
Target Start/End: Original strand, 47910950 - 47911120
Alignment:
| Q |
17 |
agcaatcagcaaggagaaaagaagtgaggagagtgatgagtgagaagagtatgagaacaatacaccctgcaatccagcccaattgtgcaacagcccatgc |
116 |
Q |
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| T |
47910950 |
agcaatcagccagtaaaaaagaagtgaggagagtgatgagtgaaaagagtatgagaataaaactccctgcaatccaacccaattgtgcaacagcccatgc |
47911049 |
T |
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| Q |
117 |
caatgacaacactccagatcctatcacagcagtcactatgtgtgcactcgcagttacccatgatccttcat |
187 |
Q |
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| T |
47911050 |
caatgacaacactccagatcctattacagcagtcactatgtgtgcacttgcagtcacccatgttccttcat |
47911120 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 278 - 370
Target Start/End: Original strand, 47920030 - 47920122
Alignment:
| Q |
278 |
catgtcaagatgaaaacctgttcgttttatgagaccatcatcatcgtattttccatcatgtatggagaagctactctgcagtgccatggctca |
370 |
Q |
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| T |
47920030 |
catgtcaagatgaaaacctgttcgttttatgagaccatcatcatcatatttttcatcatgtatggagaagctactctgcagtgccatggctca |
47920122 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 17 - 187
Target Start/End: Original strand, 47924994 - 47925164
Alignment:
| Q |
17 |
agcaatcagcaaggagaaaagaagtgaggagagtgatgagtgagaagagtatgagaacaatacaccctgcaatccagcccaattgtgcaacagcccatgc |
116 |
Q |
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| T |
47924994 |
agcaatcagccatgagacaagaagtgaggagagtaatggctgaaaagatgatgagagtgatagtccctgcaatccaacccaactgagcaacagcccatgc |
47925093 |
T |
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| Q |
117 |
caatgacaacactccagatcctatcacagcagtcactatgtgtgcactcgcagttacccatgatccttcat |
187 |
Q |
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| T |
47925094 |
caatgacaacactccagatcctattatagtcgtcactatgtgtgcactcgcagttatccatgttccttcat |
47925164 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 17 - 201
Target Start/End: Original strand, 47903852 - 47904036
Alignment:
| Q |
17 |
agcaatcagcaaggagaaaagaagtgaggagagtgatgagtgagaagagtatgagaacaatacaccctgcaatccagcccaattgtgcaacagcccatgc |
116 |
Q |
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| T |
47903852 |
agcaatcagccattagaatagaagtgaagagagtgacaagggaaaagagtatgagaacaatagtccctccgatccatcccaactgagcaacggcccatgc |
47903951 |
T |
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| Q |
117 |
caatgacaacactccagatcctatcacagcagtcactatgtgtgcactcgcagttacccatgatccttcatgcacataaaattat |
201 |
Q |
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| T |
47903952 |
cagcgacaacactccagaccctattacagccgtcactatgtgtgcactcgaagtgaaccatgttccttcatgcacatacaattat |
47904036 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 291 - 365
Target Start/End: Original strand, 47911205 - 47911279
Alignment:
| Q |
291 |
aaacctgttcgttttatgagaccatcatcatcgtattttccatcatgtatggagaagctactctgcagtgccatg |
365 |
Q |
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| T |
47911205 |
aaacctgttcgttttatgtgaccatcatcatcatattttacactatcaatggataagctactctgcactgccatg |
47911279 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 313 - 362
Target Start/End: Original strand, 47925288 - 47925337
Alignment:
| Q |
313 |
catcatcatcgtattttccatcatgtatggagaagctactctgcagtgcc |
362 |
Q |
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| T |
47925288 |
catcatcatcgtatcttccatcatccatggagaagctactctgcagtgcc |
47925337 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 85 - 164
Target Start/End: Original strand, 10299763 - 10299842
Alignment:
| Q |
85 |
gcaatccagcccaattgtgcaacagcccatgccaatgacaacactccagatcctatcacagcagtcactatgtgtgcact |
164 |
Q |
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| T |
10299763 |
gcaatccatccaagttgtgcaatagcccatgccaaagacagcactccagaaccaatcacagctgtgattatgtgtgcact |
10299842 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 291 - 356
Target Start/End: Original strand, 47904146 - 47904211
Alignment:
| Q |
291 |
aaacctgttcgttttatgagaccatcatcatcgtattttccatcatgtatggagaagctactctgc |
356 |
Q |
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| T |
47904146 |
aaacctgttcgtttcatgcgaccatcatcatcatactttccatcttctatggaaaaactactctgc |
47904211 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 87 - 140
Target Start/End: Complemental strand, 42997025 - 42996972
Alignment:
| Q |
87 |
aatccagcccaattgtgcaacagcccatgccaatgacaacactccagatcctat |
140 |
Q |
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| T |
42997025 |
aatccagcgcgattgagcaatagccaatgtcaatgacaacactccagatcctat |
42996972 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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