View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8616_low_8 (Length: 321)
Name: NF8616_low_8
Description: NF8616
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8616_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 274; Significance: 1e-153; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 28 - 305
Target Start/End: Complemental strand, 4412068 - 4411791
Alignment:
| Q |
28 |
tagataatacttacggatggaggaaattctgaaacatccaatcacgtagaacggaaacagatctttctggcaagcccctttggggcctccataactgatc |
127 |
Q |
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| T |
4412068 |
tagataatacttacggatggaggaaattctgaaacatccaatcacgtagaacggaaacagatctttctggcaagcccctttggggcctccataactgatc |
4411969 |
T |
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| Q |
128 |
tttccttttcaactgttgaagagcccattgcttttgaatgaatgaagtttcaacagataattccttatcctcttctgaccatgaactgttaaaatttgat |
227 |
Q |
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| T |
4411968 |
tttccttttcaactgttgaagagcccattgcttttgaatgaatgaagtttcaacagataattccttatcctcttctgaccatgaactgttaaaatttgat |
4411869 |
T |
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| Q |
228 |
cccatggaaagaatatgtttgctaatcctctctctcaagtccttatatagttgagaaaccgttttgacagcaaagtgc |
305 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
4411868 |
cccatggaaagaatatgtttgctaatcctctctctcaagtccttatatagtcgagaaaccgttttgacagcaaagtgc |
4411791 |
T |
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