View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8617_high_1 (Length: 620)
Name: NF8617_high_1
Description: NF8617
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8617_high_1 |
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Alignment Details
Target: chr6 (Bit Score: 429; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 429; E-Value: 0
Query Start/End: Original strand, 66 - 594
Target Start/End: Original strand, 11334126 - 11334654
Alignment:
| Q |
66 |
ttaatagatcccttatcactccaacattcccaacagataaaaagattcagcggaaccataaaattaaaatctaaccacctcattaatttgtggcaaaccg |
165 |
Q |
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| T |
11334126 |
ttaatagatcccttatcactccaacattcccaacggataaaaagattcggcggaaccataaaattaaaatctaaccacctcattaatttgtgccaaaccg |
11334225 |
T |
|
| Q |
166 |
acctttaccacctcacaatggaggaagatatgatttgatgactcttccgaaacattacaaaggacacaagaggtcgtagcccccaacggaaggacattcc |
265 |
Q |
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| T |
11334226 |
acctttaccacctcacaatggaggaagatatgatttgatgactcttccgaaacattacaaaggacataagaggtcgtagcccccaacggaaggacattcc |
11334325 |
T |
|
| Q |
266 |
ttacgcagagatttatctgagtctggattctatcatacataagctaccaagaaaaggccaccacttttaatggagccatgcttttccaaatattgcagaa |
365 |
Q |
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| T |
11334326 |
tcacacatagatttatctgactcgggattctatcatacataagcttccaagaaaaggccaccacttttaatggagccctgcttttccaaatattgacgaa |
11334425 |
T |
|
| Q |
366 |
aaccctcctttctaagccatcaaggttatcttccactaatacatcctcctctaacttcttatacatagagttcacagtataaacaccattttcctccaac |
465 |
Q |
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||||||||||||||||||| |||||||| |||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
11334426 |
aaccctcctttctaagccactgaggttatcatccactaaaacatcctcctctaacttcttatacatagagttcacagaataaacaccattttcctccaac |
11334525 |
T |
|
| Q |
466 |
ctccaccaccacctatcctctttttgagtaggcctaaaaccatccaaaatcctctaacaagttggcaaacaattcgccttcccaaaccaagaagttacgt |
565 |
Q |
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||||||||||||||||||| |||||||| ||||||||||||||||||||| | |||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
11334526 |
ctccaccaccacctatccttgttttgagtcggcctaaaaccatccaaaatcttgtaacaagttggcaaacaattggccttcccaaaccaagaagttacgt |
11334625 |
T |
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| Q |
566 |
ctccaagaccacacccaagaggctcctaa |
594 |
Q |
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| T |
11334626 |
ctccaagaccacacccaagaggctcctaa |
11334654 |
T |
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