View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8617_high_6 (Length: 264)
Name: NF8617_high_6
Description: NF8617
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8617_high_6 |
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Alignment Details
Target: chr8 (Bit Score: 216; Significance: 1e-119; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 15 - 249
Target Start/End: Original strand, 1182505 - 1182744
Alignment:
| Q |
15 |
ataattatatgtgaatgagctattggtaactggaagtaatcaaagtgagattgagaagttcaaacacacaatgtagtgtgaatttgaaatgactgattta |
114 |
Q |
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| T |
1182505 |
ataattatatgtgaatgagctattggtaactggaagtaatcaaagtgagattgagaagttcaaacacacaatgtagtgtgaatttgaaatgactgattta |
1182604 |
T |
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| Q |
115 |
ggaaaactctcttatttctgaggaatggagtttaaagctagcaagatgggaa-----atgcatcatcagaagtacattggtgaactgctagaaaagtttg |
209 |
Q |
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| T |
1182605 |
ggaaaactctcttatttcttaggaatggagtttaaagctagcaagatgggaaaggttatgcatcatcagaagtacattggtgaactgctagaaaagtttg |
1182704 |
T |
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| Q |
210 |
atatgacagattgcaacactgtcacaaatccttctgaaac |
249 |
Q |
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| T |
1182705 |
atatgacagattgcaacactgtcacaaatccttctgaaac |
1182744 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 78; Significance: 2e-36; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 19 - 132
Target Start/End: Complemental strand, 32369018 - 32368905
Alignment:
| Q |
19 |
ttatatgtgaatgagctattggtaactggaagtaatcaaagtgagattgagaagttcaaacacacaatgtagtgtgaatttgaaatgactgatttaggaa |
118 |
Q |
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|||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||| ||||||||| |
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| T |
32369018 |
ttatatgtagatgacctattggtaactggaagtaatcaaagtgagattgagaagttcaaacacactatgcagtgtgaatttgaaatgacttatttaggaa |
32368919 |
T |
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| Q |
119 |
aactctcttatttc |
132 |
Q |
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| T |
32368918 |
gactatcatatttc |
32368905 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 22 - 246
Target Start/End: Complemental strand, 8169354 - 8169124
Alignment:
| Q |
22 |
tatgtgaatgagctattggtaactggaagtaatcaaagtgagattgagaagttcaaacacacaatgtagtgtgaatttgaaatgactgatttaggaaaac |
121 |
Q |
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| T |
8169354 |
tatgtggatgatctattagtaactggaagcaattaaagtgagattgagaaattcaaacacacaatgcagtgtgaatttaaaatgaccgacttaggaagat |
8169255 |
T |
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| Q |
122 |
tctctta-tttctgaggaatggagtttaaagctagcaagatgggaa-----atgcatcatcagaagtacattggtgaactgctagaaaagtttgatatga |
215 |
Q |
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| T |
8169254 |
tttcttatttttttaggaatggaattcaaaactatcaagctaggaatagttatgcatcaacaaaagtatattggtgagctacatgaaagatttgatatgt |
8169155 |
T |
|
| Q |
216 |
cagattgcaacactgtcacaaatccttctga |
246 |
Q |
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| T |
8169154 |
caaattgcaatactatcacaaatccatctga |
8169124 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 57; Significance: 7e-24; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 40 - 132
Target Start/End: Original strand, 26075976 - 26076068
Alignment:
| Q |
40 |
gtaactggaagtaatcaaagtgagattgagaagttcaaacacacaatgtagtgtgaatttgaaatgactgatttaggaaaactctcttatttc |
132 |
Q |
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| T |
26075976 |
gtaactggaagtaatccaagtgagattgagaagttcaaacacactatgaagtgtgagtttgaaatgactggtttgggaagattatcttatttc |
26076068 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 19 - 118
Target Start/End: Original strand, 12368312 - 12368411
Alignment:
| Q |
19 |
ttatatgtgaatgagctattggtaactggaagtaatcaaagtgagattgagaagttcaaacacacaatgtagtgtgaatttgaaatgactgatttaggaa |
118 |
Q |
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| T |
12368312 |
ttatatgtaaatgacttactagtaactggaagtaatccaactgagattgagaagttcaaacacactatgaagtgtgagtttgaaatgactgatttgggaa |
12368411 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 40 - 118
Target Start/End: Complemental strand, 4958963 - 4958885
Alignment:
| Q |
40 |
gtaactggaagtaatcaaagtgagattgagaagttcaaacacacaatgtagtgtgaatttgaaatgactgatttaggaa |
118 |
Q |
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|||||| ||||||||| ||||||||||||||||||||||||||| ||| ||||||| |||||||||| |||||| |||| |
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| T |
4958963 |
gtaactagaagtaatccaagtgagattgagaagttcaaacacactatgaagtgtgagtttgaaatgattgatttgggaa |
4958885 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 19 - 132
Target Start/End: Original strand, 5242769 - 5242882
Alignment:
| Q |
19 |
ttatatgtgaatgagctattggtaactggaagtaatcaaagtgagattgagaagttcaaacacacaatgtagtgtgaatttgaaatgactgatttaggaa |
118 |
Q |
| |
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|||||||| |||| |||||||| ||||||| |||| | ||||||||| |||||||||||||| ||| |||||||||||||||| ||||||| |||| |
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| T |
5242769 |
ttatatgtagatgacctattggtgcctggaagcaatcgtaatgagattgaaaagttcaaacacactatgcggtgtgaatttgaaatgtctgattttggaa |
5242868 |
T |
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| Q |
119 |
aactctcttatttc |
132 |
Q |
| |
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||| || |||||| |
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| T |
5242869 |
gactgtcatatttc |
5242882 |
T |
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