View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8617_low_15 (Length: 231)
Name: NF8617_low_15
Description: NF8617
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8617_low_15 |
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Alignment Details
Target: chr8 (Bit Score: 209; Significance: 1e-114; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 209
Target Start/End: Complemental strand, 36332066 - 36331858
Alignment:
| Q |
1 |
agccaaaatatactcaaaggtaatggttgaactcctggaacagcatcaagcatgttattgtctctagctacattttttcttttcacttctatgattgctg |
100 |
Q |
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| T |
36332066 |
agccaaaatatactcaaaggtaatggttgaactcctggaacagcatcaagcatgttattgtctctagctacattttttcttttcacttctatgattgctg |
36331967 |
T |
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| Q |
101 |
caattgccatcgagatgcaggatagtattaggccgacacctatgcgctgcaggtgcgtgactccggttggtatgccggtgaatttacgaagaactggcac |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36331966 |
caattgccatcgagatgcaggatagtattaggccgacacctatgcgctgcaggtgcgtgactccggttggtatgccggtgaatttacgaagaactggcac |
36331867 |
T |
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| Q |
201 |
gcatattcg |
209 |
Q |
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||||||||| |
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| T |
36331866 |
gcatattcg |
36331858 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 1 - 209
Target Start/End: Complemental strand, 36324805 - 36324597
Alignment:
| Q |
1 |
agccaaaatatactcaaaggtaatggttgaactcctggaacagcatcaagcatgttattgtctctagctacattttttcttttcacttctatgattgctg |
100 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| | |
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| T |
36324805 |
agccaaaatatactcaaaggtaatggttgaactcctggaacagcatcaagcatgttattatctctagctacattttttcttttcacttctatgattgccg |
36324706 |
T |
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| Q |
101 |
caattgccatcgagatgcaggatagtattaggccgacacctatgcgctgcaggtgcgtgactccggttggtatgccggtgaatttacgaagaactggcac |
200 |
Q |
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| T |
36324705 |
cgattgccatcgagatgcaggatagtattaggccaacgcctattcgctgcaagtgagtaatgccggttggtatgccagtgaatttacggagaagtggcac |
36324606 |
T |
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| Q |
201 |
gcatattcg |
209 |
Q |
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||| ||||| |
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| T |
36324605 |
gcagattcg |
36324597 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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