View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8617_low_2 (Length: 556)
Name: NF8617_low_2
Description: NF8617
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8617_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 501; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 501; E-Value: 0
Query Start/End: Original strand, 10 - 538
Target Start/End: Original strand, 12922046 - 12922574
Alignment:
| Q |
10 |
agatggacatcagcacataaaggaagctaaagcatggaactttcttcagactatgcatgaatgaacattctgttttcattgaaaattctgttatcatatt |
109 |
Q |
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| T |
12922046 |
agatgcacataagcacataaaggaagctaaagcatggaactttcttcagactatgcatgaatgaaaattctgttatcattgaaaattctgttatcatatt |
12922145 |
T |
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| Q |
110 |
ttgagtacatccagtgaaccaaccatgagacaaaatgtatggtttgcaaagaaaacacataattatgcaacttaatttaatcatattcaaacttgcatgc |
209 |
Q |
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| T |
12922146 |
ttgagtacatccagtgaaccaaccatgagacaaaatgtatggtttgcaaagaaaacacataattatgcaacttaatttaatcatattcaaacttgcatgc |
12922245 |
T |
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| Q |
210 |
ttgtcttaagtggtccaaattgtaaaatcacatcaactgttcattaatcaattggttggatgcaagttatctaatgttgaatcattttattggtactcat |
309 |
Q |
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| T |
12922246 |
ttgtcttaagtggtccaaattgtaaaatcacatcaactgttcattaatcaattggttggatgcaagttatctaatgttgaatcattttattggtactcat |
12922345 |
T |
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| Q |
310 |
agttagatccctgattgaaataatatttgttcaaacttcacttatattccgactaaattttggaatagtcacaaaaataaaaatctagacttcgtcatta |
409 |
Q |
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| T |
12922346 |
agttagatccctgattgaaataatatttgttaaaactttacttatattccgactaaattttggaatagtcacaaaaataaaaatttagacttcgtcatta |
12922445 |
T |
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| Q |
410 |
tgagtcaaatcagatgcatgtaaacataaaatgtgtaatcatgtaccaactaaaatgttcaaactttacttatattccgactaaattatggattagtcac |
509 |
Q |
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| T |
12922446 |
tgagtcaaatcagatgcatgtaaacataaaatgtgtaatcatgtaccaactaaaatgttcaaactttacttatattccgactaaattatggattagtcac |
12922545 |
T |
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| Q |
510 |
gaaaataaaaatctagacttggtcattat |
538 |
Q |
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| T |
12922546 |
gaaaataaaaatctagacttggtcattat |
12922574 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 91; E-Value: 8e-44
Query Start/End: Original strand, 337 - 463
Target Start/End: Original strand, 12922501 - 12922626
Alignment:
| Q |
337 |
tgttcaaacttcacttatattccgactaaattttggaatagtcacaaaaataaaaatctagacttcgtcattatgagtcaaatcagatgcatgtaaacat |
436 |
Q |
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| T |
12922501 |
tgttcaaactttacttatattccgactaaattatggattagtcacgaaaataaaaatctagacttggtcattatgagtcagatcagatgcatgtaaacat |
12922600 |
T |
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| Q |
437 |
aaaatgtgtaatcatgtaccaactaaa |
463 |
Q |
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| T |
12922601 |
aaaatgtgt-atcctgtaccaactaaa |
12922626 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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