View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8617_low_3 (Length: 451)

Name: NF8617_low_3
Description: NF8617
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8617_low_3
NF8617_low_3
[»] chr3 (5 HSPs)
chr3 (54-437)||(33095925-33096302)
chr3 (138-192)||(40878226-40878280)
chr3 (121-181)||(54923500-54923560)
chr3 (138-192)||(51053649-51053703)
chr3 (160-192)||(31812266-31812298)
[»] chr5 (3 HSPs)
chr5 (121-192)||(22792153-22792224)
chr5 (121-192)||(26526527-26526598)
chr5 (143-192)||(13542847-13542895)
[»] chr4 (6 HSPs)
chr4 (109-192)||(13849357-13849441)
chr4 (121-192)||(22988034-22988105)
chr4 (121-192)||(22717112-22717183)
chr4 (143-192)||(27031857-27031906)
chr4 (145-189)||(15540061-15540105)
chr4 (109-176)||(46343330-46343398)
[»] chr1 (5 HSPs)
chr1 (109-192)||(7204551-7204635)
chr1 (121-176)||(236584-236639)
chr1 (121-176)||(11064322-11064377)
chr1 (138-189)||(40685560-40685611)
chr1 (131-189)||(29511132-29511190)
[»] chr8 (7 HSPs)
chr8 (116-192)||(3728369-3728444)
chr8 (121-176)||(11098133-11098187)
chr8 (138-192)||(4312164-4312218)
chr8 (123-177)||(31291235-31291289)
chr8 (138-192)||(36442337-36442391)
chr8 (138-192)||(43149421-43149474)
chr8 (131-192)||(37817400-37817461)
[»] chr7 (3 HSPs)
chr7 (105-192)||(24333338-24333426)
chr7 (121-192)||(6328217-6328288)
chr7 (121-178)||(35289860-35289917)
[»] chr2 (2 HSPs)
chr2 (121-192)||(39417457-39417527)
chr2 (155-192)||(22999123-22999160)
[»] scaffold0027 (1 HSPs)
scaffold0027 (109-189)||(19359-19440)
[»] chr6 (1 HSPs)
chr6 (138-191)||(31242034-31242087)


Alignment Details
Target: chr3 (Bit Score: 251; Significance: 1e-139; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 54 - 437
Target Start/End: Original strand, 33095925 - 33096302
Alignment:
54 tattgtggcttctgatatatgttttcttgttattagagaagagnnnnnnnngtcacataagtccaga-tcaactgacaaaaattacgaatttgttaggtc 152  Q
    ||||||||||||| |||||||||||||||||||||||||||||        |||||||||||||  | ||||||| ||||||| ||||| |||||||| |    
33095925 tattgtggcttctaatatatgttttcttgttattagagaagagctttttt-gtcacataagtcctaactcaactggcaaaaatgacgaaattgttaggcc 33096023  T
153 gaacgtcatgactggggttcgaactccgacacctccacttnnnnnnnnnnnnnnnnagtttacgatgacttatgttactcaagtggtagtaagtaaggta 252  Q
    ||||||||||| |||||||| |||||||||||||||||||                ||||||||||||||||||||||||||||||||||||||||||||    
33096024 gaacgtcatgattggggttcaaactccgacacctccactttgtgtgtgtg------agtttacgatgacttatgttactcaagtggtagtaagtaaggta 33096117  T
253 agacactattcaaggaagaaaacatacctatgttctccgaaagtttgttggagctatagatttcttcttctcgttatagatgtttacactctgaaccatt 352  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
33096118 agacactattcaaggaagaaaacatacctatgttctccgaaagtttgttggagctatagatttcttcttctcgttatagaagtttacactctgaaccatt 33096217  T
353 ttgatttgcatatttttctgtggctcgggagatagtatacgcatcgaatgaattttaatttaaaatgaatacggtgatggaattg 437  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
33096218 ttgatttgcatatttttctgtggctcgggacatagtatacgcatcgaatgaattttaatttaaaatgaatacggtgatggaattg 33096302  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 138 - 192
Target Start/End: Complemental strand, 40878280 - 40878226
Alignment:
138 cgaatttgttaggtcgaacgtcatgactggggttcgaactccgacacctccactt 192  Q
    |||| ||||||||||||||||||||| || ||||||||| |||| ||||||||||    
40878280 cgaaattgttaggtcgaacgtcatgattgaggttcgaaccccgatacctccactt 40878226  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 121 - 181
Target Start/End: Original strand, 54923500 - 54923560
Alignment:
121 tcaactgacaaaaattacgaatttgttaggtcgaacgtcatgactggggttcgaactccga 181  Q
    |||||||  ||||||  |||| ||||||||||| |||||||||| ||||||||||||||||    
54923500 tcaactggtaaaaatgtcgaaattgttaggtcggacgtcatgaccggggttcgaactccga 54923560  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 138 - 192
Target Start/End: Original strand, 51053649 - 51053703
Alignment:
138 cgaatttgttaggtcgaacgtcatgactggggttcgaactccgacacctccactt 192  Q
    |||| |||||||||||||||||||||  ||||||||||| |||||| || |||||    
51053649 cgaaattgttaggtcgaacgtcatgatcggggttcgaaccccgacaacttcactt 51053703  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 160 - 192
Target Start/End: Original strand, 31812266 - 31812298
Alignment:
160 atgactggggttcgaactccgacacctccactt 192  Q
    ||||| |||||||||||||||||||||||||||    
31812266 atgaccggggttcgaactccgacacctccactt 31812298  T

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Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 121 - 192
Target Start/End: Complemental strand, 22792224 - 22792153
Alignment:
121 tcaactgacaaaaattacgaatttgttaggtcgaacgtcatgactggggttcgaactccgacacctccactt 192  Q
    ||||||| |||||||  |||| ||||||||||| ||||| |||| ||||||||||| |||||||||||||||    
22792224 tcaactggcaaaaatgccgaaattgttaggtcggacgtcttgacaggggttcgaaccccgacacctccactt 22792153  T

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Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 121 - 192
Target Start/End: Original strand, 26526527 - 26526598
Alignment:
121 tcaactgacaaaaattacgaatttgttaggtcgaacgtcatgactggggttcgaactccgacacctccactt 192  Q
    ||||||| |||||||  |||| |||||||| ||||||||||||| | |||||||||||||  ||||||||||    
26526527 tcaactggcaaaaataccgaaattgttaggccgaacgtcatgaccgaggttcgaactccggtacctccactt 26526598  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 143 - 192
Target Start/End: Complemental strand, 13542895 - 13542847
Alignment:
143 ttgttaggtcgaacgtcatgactggggttcgaactccgacacctccactt 192  Q
    ||||||||| | |||||||||| ||| |||||||||||||||||||||||    
13542895 ttgttaggttggacgtcatgaccggg-ttcgaactccgacacctccactt 13542847  T

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Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 109 - 192
Target Start/End: Original strand, 13849357 - 13849441
Alignment:
109 cataagtcc-agatcaactgacaaaaattacgaatttgttaggtcgaacgtcatgactggggttcgaactccgacacctccactt 192  Q
    ||||||||| || |||||||||||||||  |||| ||||||||||  ||||| |||  ||||||||||| |||||||||||||||    
13849357 cataagtcctagctcaactgacaaaaatgtcgaaattgttaggtcagacgtcttgatcggggttcgaaccccgacacctccactt 13849441  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 121 - 192
Target Start/End: Complemental strand, 22988105 - 22988034
Alignment:
121 tcaactgacaaaaattacgaatttgttaggtcgaacgtcatgactggggttcgaactccgacacctccactt 192  Q
    ||||| |||||||||  |||| ||||||||||||||||||||||| | |||||||| |||| ||||| ||||    
22988105 tcaaccgacaaaaatgtcgaaattgttaggtcgaacgtcatgactagagttcgaaccccgatacctctactt 22988034  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 121 - 192
Target Start/End: Original strand, 22717112 - 22717183
Alignment:
121 tcaactgacaaaaattacgaatttgttaggtcgaacgtcatgactggggttcgaactccgacacctccactt 192  Q
    ||||| |||||||||  |||| ||||||||||||||||||||| | | |||||||| |||| ||||| ||||    
22717112 tcaaccgacaaaaatgtcgaaattgttaggtcgaacgtcatgattagagttcgaaccccgatacctctactt 22717183  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 143 - 192
Target Start/End: Complemental strand, 27031906 - 27031857
Alignment:
143 ttgttaggtcgaacgtcatgactggggttcgaactccgacacctccactt 192  Q
    |||| |||||| |||||||||| | ||||||||||||||||||| |||||    
27031906 ttgtcaggtcgtacgtcatgaccgtggttcgaactccgacaccttcactt 27031857  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 145 - 189
Target Start/End: Original strand, 15540061 - 15540105
Alignment:
145 gttaggtcgaacgtcatgactggggttcgaactccgacacctcca 189  Q
    |||||||||||||| |||| ||||||||||||| || ||||||||    
15540061 gttaggtcgaacgttatgattggggttcgaacttcggcacctcca 15540105  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 109 - 176
Target Start/End: Original strand, 46343330 - 46343398
Alignment:
109 cataagtcc-agatcaactgacaaaaattacgaatttgttaggtcgaacgtcatgactggggttcgaac 176  Q
    ||||||||| || ||||||||||||| |  |||| |||||||| || |||||||||| |||||||||||    
46343330 cataagtcctagctcaactgacaaaagtgccgaaattgttaggccggacgtcatgaccggggttcgaac 46343398  T

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Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 109 - 192
Target Start/End: Complemental strand, 7204635 - 7204551
Alignment:
109 cataagtcc-agatcaactgacaaaaattacgaatttgttaggtcgaacgtcatgactggggttcgaactccgacacctccactt 192  Q
    ||||||||| || ||||||| |||||||  |||| |||||||| ||||| ||||||| ||||||||||| |||| ||||||||||    
7204635 cataagtcctagctcaactggcaaaaatgccgaaattgttaggccgaacatcatgaccggggttcgaaccccgatacctccactt 7204551  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 121 - 176
Target Start/End: Original strand, 236584 - 236639
Alignment:
121 tcaactgacaaaaattacgaatttgttaggtcgaacgtcatgactggggttcgaac 176  Q
    |||||||||||||||  |||| |||||||| || |||||||||| |||||||||||    
236584 tcaactgacaaaaatgtcgaaattgttaggccggacgtcatgaccggggttcgaac 236639  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 121 - 176
Target Start/End: Complemental strand, 11064377 - 11064322
Alignment:
121 tcaactgacaaaaattacgaatttgttaggtcgaacgtcatgactggggttcgaac 176  Q
    |||||||| ||||||  ||||||| ||| |||||||| ||||||||||||||||||    
11064377 tcaactgataaaaatgtcgaatttattaagtcgaacgccatgactggggttcgaac 11064322  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 138 - 189
Target Start/End: Original strand, 40685560 - 40685611
Alignment:
138 cgaatttgttaggtcgaacgtcatgactggggttcgaactccgacacctcca 189  Q
    |||| ||||||||||| | |||||||| |||||||||||||||| |||||||    
40685560 cgaaattgttaggtcggatgtcatgaccggggttcgaactccgatacctcca 40685611  T

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Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 131 - 189
Target Start/End: Original strand, 29511132 - 29511190
Alignment:
131 aaaattacgaatttgttaggtcgaacgtcatgactggggttcgaactccgacacctcca 189  Q
    ||||| ||||| |||||||| |||| |||||||| ||||||||||| |||| |||||||    
29511132 aaaatgacgaaattgttaggccgaatgtcatgaccggggttcgaaccccgatacctcca 29511190  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 116 - 192
Target Start/End: Complemental strand, 3728444 - 3728369
Alignment:
116 ccagatcaactgacaaaaattacgaatttgttaggtcgaacgtcatgactggggttcgaactccgacacctccactt 192  Q
    |||| |||||||||||||  | |||| ||||||||||| | ||||||| |||||||||||| |||| ||||||||||    
3728444 ccagctcaactgacaaaatat-cgaaattgttaggtcggatgtcatgattggggttcgaaccccgatacctccactt 3728369  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 121 - 176
Target Start/End: Complemental strand, 11098187 - 11098133
Alignment:
121 tcaactgacaaaaattacgaatttgttaggtcgaacgtcatgactggggttcgaac 176  Q
    |||||||||||||  | |||| ||||||||||||| ||||||||||||||||||||    
11098187 tcaactgacaaaatat-cgaaattgttaggtcgaatgtcatgactggggttcgaac 11098133  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 138 - 192
Target Start/End: Original strand, 4312164 - 4312218
Alignment:
138 cgaatttgttaggtcgaacgtcatgactggggttcgaactccgacacctccactt 192  Q
    |||| ||||||||||| | | ||||||||||||||||||||||  ||||||||||    
4312164 cgaaattgttaggtcggatgccatgactggggttcgaactccggtacctccactt 4312218  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 123 - 177
Target Start/End: Original strand, 31291235 - 31291289
Alignment:
123 aactgacaaaaattacgaatttgttaggtcgaacgtcatgactggggttcgaact 177  Q
    |||||||||||||  |||| |||||||| ||||||||||||  ||||||||||||    
31291235 aactgacaaaaatgccgaaattgttaggccgaacgtcatgatcggggttcgaact 31291289  T

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Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 138 - 192
Target Start/End: Original strand, 36442337 - 36442391
Alignment:
138 cgaatttgttaggtcgaacgtcatgactggggttcgaactccgacacctccactt 192  Q
    |||| ||||||||||| | ||||||| ||||||||||||||||  ||||||||||    
36442337 cgaaattgttaggtcggatgtcatgattggggttcgaactccggtacctccactt 36442391  T

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Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 138 - 192
Target Start/End: Complemental strand, 43149474 - 43149421
Alignment:
138 cgaatttgttaggtcgaacgtcatgactggggttcgaactccgacacctccactt 192  Q
    |||| ||||||||||| ||||||| |||  |||||||||||||||||||||||||    
43149474 cgaaattgttaggtcggacgtcat-actaaggttcgaactccgacacctccactt 43149421  T

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Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 131 - 192
Target Start/End: Original strand, 37817400 - 37817461
Alignment:
131 aaaattacgaatttgttaggtcgaacgtcatgactggggttcgaactccgacacctccactt 192  Q
    ||||| ||||| ||||||||||| | | |||||| ||||||||||| |||| ||||||||||    
37817400 aaaatgacgaaattgttaggtcggatgccatgaccggggttcgaaccccgatacctccactt 37817461  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000003; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 105 - 192
Target Start/End: Original strand, 24333338 - 24333426
Alignment:
105 gtcacataagtcc-agatcaactgacaaaaattacgaatttgttaggtcgaacgtcatgactggggttcgaactccgacacctccactt 192  Q
    ||||||||||||| || |||||| ||||||||  |||| |||||||| ||| ||||||||  ||||||||||||||   ||||||||||    
24333338 gtcacataagtcctagctcaacttacaaaaatgtcgaaattgttaggccgagcgtcatgatcggggttcgaactccagtacctccactt 24333426  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 121 - 192
Target Start/End: Complemental strand, 6328288 - 6328217
Alignment:
121 tcaactgacaaaaattacgaatttgttaggtcgaacgtcatgactggggttcgaactccgacacctccactt 192  Q
    ||||||| |||||||  | || ||||||||| | ||||||||||| |||||||||| |||| ||||||||||    
6328288 tcaactggcaaaaatgtcaaaattgttaggttggacgtcatgactagggttcgaaccccgatacctccactt 6328217  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 121 - 178
Target Start/End: Original strand, 35289860 - 35289917
Alignment:
121 tcaactgacaaaaattacgaatttgttaggtcgaacgtcatgactggggttcgaactc 178  Q
    |||||||||||||||   ||| ||||||||||  ||||||||| ||||||||||||||    
35289860 tcaactgacaaaaatgctgaaattgttaggtcagacgtcatgattggggttcgaactc 35289917  T

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Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 121 - 192
Target Start/End: Original strand, 39417457 - 39417527
Alignment:
121 tcaactgacaaaaattacgaatttgttaggtcgaacgtcatgactggggttcgaactccgacacctccactt 192  Q
    |||||||||||||||  |||| |||||||| || | |||||||| |||||||||||||||| | ||||||||    
39417457 tcaactgacaaaaataccgaaattgttaggccggatgtcatgac-ggggttcgaactccgatatctccactt 39417527  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 155 - 192
Target Start/End: Original strand, 22999123 - 22999160
Alignment:
155 acgtcatgactggggttcgaactccgacacctccactt 192  Q
    |||||||||| ||||||||||| |||||||||||||||    
22999123 acgtcatgaccggggttcgaaccccgacacctccactt 22999160  T

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Target: scaffold0027 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 109 - 189
Target Start/End: Complemental strand, 19440 - 19359
Alignment:
109 cataagtcc-agatcaactgacaaaaattacgaatttgttaggtcgaacgtcatgactggggttcgaactccgacacctcca 189  Q
    ||||||||| || ||||||| |||||||   ||| |||||||| || ||||||||| |||||||||||| |||| |||||||    
19440 cataagtcctagttcaactggcaaaaatgttgaaattgttaggccggacgtcatgattggggttcgaaccccgatacctcca 19359  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 138 - 191
Target Start/End: Complemental strand, 31242087 - 31242034
Alignment:
138 cgaatttgttaggtcgaacgtcatgactggggttcgaactccgacacctccact 191  Q
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31242087 cgaaattgttaggccggacgtcatgaccggggttcgaatcccgacacctccact 31242034  T

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