View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8617_low_5 (Length: 371)
Name: NF8617_low_5
Description: NF8617
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8617_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 208; Significance: 1e-114; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 120 - 355
Target Start/End: Complemental strand, 21814583 - 21814349
Alignment:
| Q |
120 |
tgacaaacacacaataaattttcaggtacattcatccaatataatttaatgtatttaatacatgcacttaaagctccttgtgtctcatgcattcctctcg |
219 |
Q |
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| T |
21814583 |
tgacaaacacacaatgaatttccaggtgcattcatccaatata-tttaatgtatttaatacatgcacttaaagctccttgtgtctcatgcattcctctcg |
21814485 |
T |
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| Q |
220 |
gtccaataccaattcatgcaaaaatcgtattttgtgcattgttttaatgtcaaactattgaaggagtaattgataaacatgaaattgaagagtaaagtaa |
319 |
Q |
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| T |
21814484 |
gtccaataccgattcatgcaaaaatcgtattttgtgcattgttttaatgtcaaactattgaaggagtaattgataaacatgaaattgaagagtaaagtaa |
21814385 |
T |
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| Q |
320 |
tatcaaatcaataacataaaaattaaatcagaatac |
355 |
Q |
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| T |
21814384 |
tatcaaatcaataacataaaaattaagtcagaatac |
21814349 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 9 - 88
Target Start/End: Complemental strand, 21814662 - 21814583
Alignment:
| Q |
9 |
tggtgttctatatatctatttgtgtcttatgcatgcatgatataacttttattttggaatggaatgagtttctacgttct |
88 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21814662 |
tggtgttctatatatctatttgtgtcttatgcatgcatgatataacttttattttggaatggaatgagtttctacgttct |
21814583 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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