View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8617_low_6 (Length: 338)
Name: NF8617_low_6
Description: NF8617
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8617_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 285; Significance: 1e-160; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 18 - 330
Target Start/End: Original strand, 26322986 - 26323298
Alignment:
| Q |
18 |
aatatgacaacccaaatcgattccttcaaccaactcattcaagaaaatgtctatactccttcagatctcaacaaagctattgcttatgtctcagttgctg |
117 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
26322986 |
aatatgacagcccaaatcgattccttcaaccaactcattcaagaaaatgtctatactccttcagatctcagcaaagctattgcttatgtctcagttgctg |
26323085 |
T |
|
| Q |
118 |
gaaatgactacaatcattacttggccacaaatggctctcttccggtaaatttattcattttgatatgagcagcgatgaaaatttcataactctattagtc |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||| |||||| ||||||||||| |
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| T |
26323086 |
gaaatgactacaatcattacttggccacaaatggctctcttccggtaaatttgttcattatgatatgagcagcgatgaaaacttcatatctctattagtc |
26323185 |
T |
|
| Q |
218 |
aatttcatacctcgatatgaattttaacaaataatttcatttaatatacgcagggttttccatctttcattgcttcagtggttaaacaaacaaccaccga |
317 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26323186 |
aatttcatacctcgacatgaattttaacaaataatttcatttaatatacgcagggttttccatctttcattgcttcagtggttaaacaaacaaccaccga |
26323285 |
T |
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| Q |
318 |
tttgattcatctc |
330 |
Q |
| |
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||||||||||||| |
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| T |
26323286 |
tttgattcatctc |
26323298 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 18 - 168
Target Start/End: Original strand, 26336003 - 26336153
Alignment:
| Q |
18 |
aatatgacaacccaaatcgattccttcaaccaactcattcaagaaaatgtctatactccttcagatctcaacaaagctattgcttatgtctcagttgctg |
117 |
Q |
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||||||||||||||||| ||||||||||||||| |||| ||| ||||||||||||||| |||||| ||| ||| |||||||||||||||| ||||||| |
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| T |
26336003 |
aatatgacaacccaaattgattccttcaaccaagtcatccaaaaaaatgtctatactctctcagatatcaccaattctattgcttatgtctctgttgctg |
26336102 |
T |
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| Q |
118 |
gaaatgactacaatcattacttggccacaaatggctctcttccggtaaatt |
168 |
Q |
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||||||||||| || ||||| |||||| | ||||||||||| ||||||||| |
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| T |
26336103 |
gaaatgactactatgattacatggccatagatggctctctttcggtaaatt |
26336153 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 22 - 136
Target Start/End: Original strand, 26328296 - 26328410
Alignment:
| Q |
22 |
tgacaacccaaatcgattccttcaaccaactcattcaagaaaatgtctatactccttcagatctcaacaaagctattgcttatgtctcagttgctggaaa |
121 |
Q |
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||||||| |||||| ||||||| | | ||||||||||||||||||| || ||||| |||||| ||| |||| |||| ||||||||||| ||||||||||| |
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| T |
26328296 |
tgacaacacaaatcaattccttaatcaaactcattcaagaaaatgtatacactccctcagatatcaccaaatctatagcttatgtctctgttgctggaaa |
26328395 |
T |
|
| Q |
122 |
tgactacaatcatta |
136 |
Q |
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|||||||||| |||| |
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| T |
26328396 |
tgactacaattatta |
26328410 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 234 - 329
Target Start/End: Original strand, 26342984 - 26343080
Alignment:
| Q |
234 |
atgaattttaacaaa-taatttcatttaatatacgcagggttttccatctttcattgcttcagtggttaaacaaacaaccaccgatttgattcatct |
329 |
Q |
| |
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|||||| |||||||| ||||||||||||| ||||||||||||| |||||||| |||| |||||| |||| |||||||||||| ||||||||||||| |
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| T |
26342984 |
atgaatgttaacaaaataatttcatttaaaatacgcagggtttcccatcttttattgaatcagtgattaaccaaacaaccaccaatttgattcatct |
26343080 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 234 - 330
Target Start/End: Original strand, 26336622 - 26336719
Alignment:
| Q |
234 |
atgaattttaacaaa-taatttcatttaatatacgcagggttttccatctttcattgcttcagtggttaaacaaacaaccaccgatttgattcatctc |
330 |
Q |
| |
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|||||| |||||||| |||||| ||| |||| | ||||||||| |||||||| |||| |||||| |||||||||||||||| |||||||||||||| |
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| T |
26336622 |
atgaatgttaacaaaataattttattgaataaatgcagggtttcccatcttttattgaatcagtgattaaacaaacaaccactaatttgattcatctc |
26336719 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 277 - 329
Target Start/End: Original strand, 26329353 - 26329405
Alignment:
| Q |
277 |
ccatctttcattgcttcagtggttaaacaaacaaccaccgatttgattcatct |
329 |
Q |
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||||||||||||| |||||| || |||||||||||||| ||||||||||||| |
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| T |
26329353 |
ccatctttcattgaatcagtgattgaacaaacaaccaccaatttgattcatct |
26329405 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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