View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8617_low_7 (Length: 332)

Name: NF8617_low_7
Description: NF8617
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8617_low_7
NF8617_low_7
[»] chr3 (6 HSPs)
chr3 (16-321)||(19199131-19199437)
chr3 (43-253)||(6777837-6778048)
chr3 (28-244)||(1596237-1596454)
chr3 (28-244)||(34437781-34437997)
chr3 (257-304)||(34437674-34437721)
chr3 (39-128)||(21565966-21566054)
[»] chr1 (8 HSPs)
chr1 (26-249)||(43782700-43782924)
chr1 (28-244)||(48999827-49000044)
chr1 (28-249)||(45152677-45152899)
chr1 (28-168)||(40553596-40553736)
chr1 (16-253)||(3375894-3376131)
chr1 (39-168)||(33297214-33297343)
chr1 (257-309)||(45152954-45153005)
chr1 (255-305)||(3375795-3375845)
[»] scaffold0018 (1 HSPs)
scaffold0018 (16-249)||(180324-180558)
[»] chr7 (3 HSPs)
chr7 (28-247)||(12627421-12627641)
chr7 (16-254)||(1326840-1327079)
chr7 (37-168)||(38457493-38457624)
[»] chr5 (9 HSPs)
chr5 (64-247)||(26653528-26653712)
chr5 (64-247)||(26925113-26925297)
chr5 (38-244)||(13274093-13274300)
chr5 (28-168)||(2742997-2743137)
chr5 (112-168)||(21101423-21101479)
chr5 (257-321)||(26653769-26653833)
chr5 (257-321)||(26925354-26925418)
chr5 (39-160)||(24209211-24209332)
chr5 (257-312)||(21101616-21101672)
[»] chr8 (3 HSPs)
chr8 (28-253)||(37227721-37227947)
chr8 (37-183)||(14096700-14096846)
chr8 (257-304)||(37227623-37227670)
[»] chr2 (4 HSPs)
chr2 (37-253)||(31116886-31117103)
chr2 (16-147)||(28035635-28035766)
chr2 (257-304)||(28035925-28035972)
chr2 (257-315)||(31116777-31116835)
[»] chr4 (11 HSPs)
chr4 (37-159)||(25147344-25147466)
chr4 (28-244)||(42705139-42705356)
chr4 (27-168)||(39465347-39465486)
chr4 (249-304)||(3681088-3681143)
chr4 (257-304)||(25147612-25147659)
chr4 (257-304)||(32305590-32305637)
chr4 (257-304)||(39465623-39465670)
chr4 (28-134)||(32307880-32307986)
chr4 (28-121)||(3680825-3680918)
chr4 (131-168)||(32305774-32305811)
chr4 (257-301)||(42705035-42705079)
[»] scaffold0251 (2 HSPs)
scaffold0251 (37-248)||(16977-17192)
scaffold0251 (257-304)||(16875-16922)
[»] scaffold0408 (1 HSPs)
scaffold0408 (37-183)||(7042-7188)
[»] chr6 (3 HSPs)
chr6 (28-168)||(6285814-6285954)
chr6 (64-181)||(35014337-35014454)
chr6 (39-129)||(2029728-2029818)
[»] scaffold0007 (1 HSPs)
scaffold0007 (97-168)||(257345-257416)
[»] scaffold0010 (1 HSPs)
scaffold0010 (39-137)||(32353-32451)


Alignment Details
Target: chr3 (Bit Score: 215; Significance: 1e-118; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 16 - 321
Target Start/End: Original strand, 19199131 - 19199437
Alignment:
Q  16 agagacaacaagacattacgtcctttcaggacatatgctagtactctagatggatcatggccggcaaatacaagagggtatgtcacttgccatagtgggt 115  Q
    ||||||||| |||||||||||||||| || |||||||||||| |||  |||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  19199131 agagacaacgagacattacgtccttttagaacatatgctagtgctccggatggatcatggccggcaaatacaagagggtatgtcacttgccagagtgggt 19199230  T
Q  116 tattaggcagtacgagtatgtctagactattcccaggcctcctacagacattgggcctcttacggcaggggacgtagctatggccttcgcagagttt-ct 214  Q
    | ||||||||||| |||||||| | ||| ||||||||||||||||| |||||||||||||||||||||||||||| | ||||||||||||||||||| ||    
T  19199231 tcttaggcagtactagtatgtccaaactgttcccaggcctcctacaaacattgggcctcttacggcaggggacgtggttatggccttcgcagagtttgct 19199330  T
Q  215 ctacatgccctcagccagcaggagaggggtgatctagttttgtagagtatcacatcctattatgaacctccatgcgtccattcctgactacacagttgat 314  Q
    ||||||| |||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||    
T  19199331 ctacatgtcctcagccagtaggagaggggtgatctatttttgtagagtatcacatcctattatgaacccccctgcgtccattcctgactacacagttgat 19199430  T
Q  315 gtccatc 321  Q
    | |||||    
T  19199431 gcccatc 19199437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 43 - 253
Target Start/End: Original strand, 6777837 - 6778048
Alignment:
Q  43 aggacatatgctagtactctagatggatcatggccggcaaatacaagagggtatgtcacttgccatagtgggttattaggcagtacgagtatgtctagac 142  Q
    |||||||||||| || |||  ||||||||||||||| |||  ||| || |||  ||||||||| | || ||||| |||||||||||| ||||||| ||||    
T  6777837 aggacatatgctggtgctccggatggatcatggccgacaacgacaggatggtccgtcacttgctagagagggttcttaggcagtacgggtatgtccagac 6777936  T
Q  143 tattcccaggcctcctacagacattgggcctcttacggcaggggacgtagctatggccttcgcagagttt-ctctacatgccctcagccagcaggagagg 241  Q
    |||||  ||| ||||||||||||||| || | || ||||||  ||||| ||   ||||||| | |||||| ||||||||| ||||||||| ||| |||||    
T  6777937 tattctgagggctcctacagacattgagcttattgcggcagatgacgtggcccaggccttcacggagtttgctctacatgtcctcagccatcagcagagg 6778036  T
Q  242 ggtgatctagtt 253  Q
    ||||||| ||||    
T  6778037 ggtgatccagtt 6778048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 28 - 244
Target Start/End: Complemental strand, 1596454 - 1596237
Alignment:
Q  28 acattacgtcctttcaggacatatgctagtactctagatggatcatggccggcaaatacaagagggtatgtcacttgccatagtgggttattaggcagta 127  Q
    |||| ||| |||||||||||||||||| ||||||  |||||||||||||| |||   ||| || |||  ||||||||||| || ||||| ||||||||||    
T  1596454 acatcacgccctttcaggacatatgctggtactccggatggatcatggccagcagcgacaggatggtccgtcacttgccaaagcgggttcttaggcagta 1596355  T
Q  128 cgagtatgtctagactattcccaggcctcctacagacattgggcctcttacggcaggggacgtagctatggccttcgcagagttt-ctctacatgccctc 226  Q
    |  ||||||| |||||||||  ||| ||||||||||||||| || | || ||||||  ||||| ||   |||||||   |||||| ||||||||| ||||    
T  1596354 caggtatgtccagactattctgagggctcctacagacattgagcttattgcggcagatgacgtggcccaggccttcatggagtttgctctacatgtcctc 1596255  T
Q  227 agccagcaggagaggggt 244  Q
    | ||| ||| ||||||||    
T  1596254 acccatcagcagaggggt 1596237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 28 - 244
Target Start/End: Complemental strand, 34437997 - 34437781
Alignment:
Q  28 acattacgtcctttcaggacatatgctagtactctagatggatcatggccggcaaatacaagagggtatgtcacttgccatagtgggttattaggcagta 127  Q
    |||| ||| |||||||||||||||||| ||||||  |||||||||||| ||| |    || || |||  |||| || ||| || ||||| ||||||||||    
T  34437997 acatcacgccctttcaggacatatgctggtactccggatggatcatggtcggtagtggcaggatggtccgtcaatttccagagcgggttcttaggcagta 34437898  T
Q  128 cgagtatgtctagactattcccaggcctcctacagacattgggcctcttacggcaggggacgtagctatggccttcgcagagttt-ctctacatgccctc 226  Q
    || ||||||  |||||||||||||| ||||||| ||||||| || | || |||| |  ||||| || | || |||| | |||||| ||||||||| ||||    
T  34437897 cgggtatgtacagactattcccagggctcctactgacattgagcttattgcggcggatgacgtggcca-ggtcttcacggagtttgctctacatgtcctc 34437799  T
Q  227 agccagcaggagaggggt 244  Q
    ||||| ||||| ||||||    
T  34437798 agccatcaggataggggt 34437781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 257 - 304
Target Start/End: Complemental strand, 34437721 - 34437674
Alignment:
Q  257 tagagtatcacatcctattatgaacctccatgcgtccattcctgacta 304  Q
    ||||||||||||||||||| ||||||||| |||| |||||||||||||    
T  34437721 tagagtatcacatcctattgtgaacctccctgcgcccattcctgacta 34437674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 39 - 128
Target Start/End: Original strand, 21565966 - 21566054
Alignment:
Q  39 tttcaggacatatgctagtactctagatggatcatggccggcaaatacaagagggtatgtcacttgccatagtgggttattaggcagtac 128  Q
    ||||||||| | |||| ||||||| ||||||||||||||| |||| | |||| ||| |||||||||||  || ||||| | |||||||||    
T  21565966 tttcaggacgtgtgct-gtactctggatggatcatggccgacaaacaaaagatggtgtgtcacttgcccgagcgggttctgaggcagtac 21566054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 121; Significance: 6e-62; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 26 - 249
Target Start/End: Complemental strand, 43782924 - 43782700
Alignment:
Q  26 agacattacgtcctttcaggacatatgctagtactctagatggatcatggccggcaaatacaagagggtatgtcacttgccatagtgggttattaggcag 125  Q
    |||||||||| ||||||| |||||||||||||||||| |||||||||||| ||||||| ||| |||||| |||||||||||| || | ||| |||||||     
T  43782924 agacattacgccctttcacgacatatgctagtactctggatggatcatggtcggcaaagacatgagggtctgtcacttgccagagcgagttcttaggcaa 43782825  T
Q  126 tacgagtatgtctagactattcccaggcctcctacagacattgggcctcttacggcaggggacgtagctatggccttcgcagagttt-ctctacatgccc 224  Q
    |||||||||||| ||||||| |||| ||||||||||||||||||||||||| || || ||||||| |||||||||| |   |||||| ||||||||| ||    
T  43782824 tacgagtatgtccagactatacccatgcctcctacagacattgggcctcttgcgtcaagggacgtggctatggcctccatggagtttgctctacatgtcc 43782725  T
Q  225 tcagccagcaggagaggggtgatct 249  Q
    |||||||||||||||||||||||||    
T  43782724 tcagccagcaggagaggggtgatct 43782700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 28 - 244
Target Start/End: Original strand, 48999827 - 49000044
Alignment:
Q  28 acattacgtcctttcaggacatatgctagtactctagatggatcatggccggcaaatacaagagggtatgtcacttgccatagtgggttattaggcagta 127  Q
    |||| ||| |||||||||||||||||| ||||||  |||||||||||||||||||  ||| || |||  ||||||||||| || ||||| ||||||||||    
T  48999827 acatcacgccctttcaggacatatgctggtactccggatggatcatggccggcaacgacaggatggtccgtcacttgccagagcgggttcttaggcagta 48999926  T
Q  128 cgagtatgtctagactattcccaggcctcctacagacattgggcctcttacggcaggggacgtagctatggccttcgcagagttt-ctctacatgccctc 226  Q
    || |||||||||||||||||||||| ||||||||||||||| || | || |||| |  ||||| |||  ||||||| | |||||| ||||||||| ||||    
T  48999927 cgggtatgtctagactattcccagggctcctacagacattgagcttattgcggcggatgacgtggctcaggccttcacggagtttgctctacatgtcctc 49000026  T
Q  227 agccagcaggagaggggt 244  Q
    ||||| ||||| ||||||    
T  49000027 agccatcaggataggggt 49000044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 28 - 249
Target Start/End: Original strand, 45152677 - 45152899
Alignment:
Q  28 acattacgtcctttcaggacatatgctagtactctagatggatcatggccggcaaatacaagagggtatgtcacttgccatagtgggttattaggcagta 127  Q
    |||| ||| |||||||||||||||| | |||||| ||||||||||||||||||||| ||| | ||||   | |||||| | || ||||| |||||||||     
T  45152677 acatcacgccctttcaggacatatgttggtactccagatggatcatggccggcaaagacatgcgggttcattacttgctagagcgggttcttaggcagtt 45152776  T
Q  128 cgagtatgtctagactattcccaggcctcctacagacattgggcctcttacggcaggggacgtagctatggccttcgcagagttt-ctctacatgccctc 226  Q
    || ||||||| ||||| |||| |||| |||||||||||||||||||||| || ||| ||| || ||||||||||||   |||||| |||||||||  |||    
T  45152777 cgggtatgtccagactgttcctaggcatcctacagacattgggcctcttgcgacagcggatgtggctatggccttcatggagtttgctctacatgttctc 45152876  T
Q  227 agccagcaggagaggggtgatct 249  Q
    ||||| | ||||| |||||||||    
T  45152877 agccaactggagatgggtgatct 45152899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 28 - 168
Target Start/End: Complemental strand, 40553736 - 40553596
Alignment:
Q  28 acattacgtcctttcaggacatatgctagtactctagatggatcatggccggcaaatacaagagggtatgtcacttgccatagtgggttattaggcagta 127  Q
    |||| ||| ||||||| |||||||||| ||||||  ||||||||||||||||||   ||| || |||  ||||||||||| || ||||| ||||||||||    
T  40553736 acatcacgccctttcatgacatatgctggtactccggatggatcatggccggcagcgacaggatggtccgtcacttgccagagcgggttcttaggcagta 40553637  T
Q  128 cgagtatgtctagactattcccaggcctcctacagacattg 168  Q
    |||||||||| |||||||||||||| |||||||||||||||    
T  40553636 cgagtatgtccagactattcccagggctcctacagacattg 40553596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 16 - 253
Target Start/End: Complemental strand, 3376131 - 3375894
Alignment:
Q  16 agagacaacaagacattacgtcctttcaggacatatgctagtactctagatggatcatggccggcaaatacaagagggtatgtcacttgccatagtgggt 115  Q
    |||||| || ||||||  || |||||||||||||||  | ||||||  |||||||||||||||| | | ||| || |||  ||||||||||| || ||||    
T  3376131 agagacgacgagacatggcgccctttcaggacatattttggtactccggatggatcatggccggtagagacaggatggtccgtcacttgccagagcgggt 3376032  T
Q  116 tattaggcagtacgagtatgtctagactattcccaggcctcctacagacattgggcctcttacggcaggggacgtagctatggccttcgcagag-tttct 214  Q
    | ||||||| |||  ||||||| |||||  ||||||  |||||||||| ||||||||||||  | ||| ||| || |||||| |||||   ||| |||||    
T  3376031 tcttaggcaatacatgtatgtccagactggtcccagagctcctacagatattgggcctcttgtgccagaggaggtggctatgaccttcatggagttttct 3375932  T
Q  215 ctacatgccctcagccagcaggagaggggtgatctagtt 253  Q
    ||||||| ||||||||||||||||| |||||||||||||    
T  3375931 ctacatgtcctcagccagcaggaga-gggtgatctagtt 3375894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 39 - 168
Target Start/End: Complemental strand, 33297343 - 33297214
Alignment:
Q  39 tttcaggacatatgctagtactctagatggatcatggccggcaaatacaagagggtatgtcacttgccatagtgggttattaggcagtacgagtatgtct 138  Q
    |||||||||||||||| ||||||  ||||||||||||||| ||   ||| || |||  ||||||||||| || ||||| |||||||||||| ||||| |     
T  33297343 tttcaggacatatgctggtactccggatggatcatggccgacagcgacaggatggtccgtcacttgccagagcgggttcttaggcagtacgggtatgacc 33297244  T
Q  139 agactattcccaggcctcctacagacattg 168  Q
    |||||||||||||| |||||||||||||||    
T  33297243 agactattcccagggctcctacagacattg 33297214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 257 - 309
Target Start/End: Original strand, 45152954 - 45153005
Alignment:
Q  257 tagagtatcacatcctattatgaacctccatgcgtccattcctgactacacag 309  Q
    ||||||||||||||||||| |||||| || |||| ||||||||||||||||||    
T  45152954 tagagtatcacatcctattgtgaacc-ccctgcggccattcctgactacacag 45153005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 255 - 305
Target Start/End: Complemental strand, 3375845 - 3375795
Alignment:
Q  255 tgtagagtatcacatcctattatgaacctccatgcgtccattcctgactac 305  Q
    ||||||||| ||||||||||| |||||| || |||| ||||||||||||||    
T  3375845 tgtagagtagcacatcctattgtgaacccccctgcggccattcctgactac 3375795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 119; Significance: 9e-61; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 119; E-Value: 9e-61
Query Start/End: Original strand, 16 - 249
Target Start/End: Complemental strand, 180558 - 180324
Alignment:
Q  16 agagacaacaagacattacgtcctttcaggacatatgctagtactctagatggatcatggccggcaaatacaagagggtatgtcacttgccatagtgggt 115  Q
    |||||| || |||||||| | |||||||||||||||| | ||||||  ||||||||||||||| |||| ||| |||||| |||||||||||| || ||||    
T  180558 agagacgacgagacattatgccctttcaggacatatgttggtactccggatggatcatggccgccaaagacaggagggtctgtcacttgccagagcgggt 180459  T
Q  116 tattaggcagtacgagtatgtctagactattcccaggcctcctacagacattgggcctcttacggcaggggacgtagctatggccttcgcagagttt-ct 214  Q
    | |||||||||||| ||||||||||||| ||||||||||||||||| ||||||||||||||  |||||||||| | |||||| |||||   |||||| ||    
T  180458 tcttaggcagtacgggtatgtctagactgttcccaggcctcctacaaacattgggcctcttgtggcaggggacatggctatgaccttcatggagtttgct 180359  T
Q  215 ctacatgccctcagccagcaggagaggggtgatct 249  Q
    ||||||| |||||||||||||||||||||||||||    
T  180358 ctacatgtcctcagccagcaggagaggggtgatct 180324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 81; Significance: 4e-38; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 28 - 247
Target Start/End: Original strand, 12627421 - 12627641
Alignment:
Q  28 acattacgtcctttcaggacatatgctagtactctagatggatcatggccggcaaatacaagagggtatgtcacttgccatagtgggttattaggcagta 127  Q
    |||| ||| ||||| |||||||||| | |||||||||||||||||||||||||||| ||| || |||  ||||||||||| |||||||| ||| ||||||    
T  12627421 acatgacgcccttttaggacatatggtggtactctagatggatcatggccggcaaagacaggatggttcgtcacttgccagagtgggttcttatgcagta 12627520  T
Q  128 cgagtatgtctagactattcccaggcctcctacagacattgggcctcttacggcaggggacgtagctatggccttcgcagag-tttctctacatgccctc 226  Q
    |  ||||| | ||||| |||||||||||||||||||||||||| || || || ||| ||  || ||||||||||||   ||| |||||||||||| ||||    
T  12627521 caggtatgcccagactgttcccaggcctcctacagacattgggactgttgcgccagaggcggtggctatggccttcatggagttttctctacatgtcctc 12627620  T
Q  227 agccagcaggagaggggtgat 247  Q
    ||||| ||  |||||||||||    
T  12627621 agccaacaacagaggggtgat 12627641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 16 - 254
Target Start/End: Complemental strand, 1327079 - 1326840
Alignment:
Q  16 agagacaacaagacattacgtcctttcaggacatatgctagtactctagatggatcatggccggcaaatacaagagggtatgtcacttgccatagtgggt 115  Q
    |||||| || |||||||||  |||||||||||||||| | ||||||  |||||||||||||| ||| | ||||||||||  ||||||||||| |  |||     
T  1327079 agagacgacgagacattacaccctttcaggacatatgttggtactccggatggatcatggcctgcagagacaagagggtccgtcacttgccagaacggga 1326980  T
Q  116 tattaggcagtacgagtatgtctagactattcccaggcctcctacagacattgggcctcttacggcaggggacgtagctatggccttcgcagagttt-ct 214  Q
    | |||||||||| | ||||||| | | | ||| || ||||||||||||||||||||||||  || ||||||| || | || |||||||   |||||| ||    
T  1326979 ttttaggcagtatgggtatgtccaaattgttcacatgcctcctacagacattgggcctctggcgccaggggaggtggttacggccttcatggagtttgct 1326880  T
Q  215 ctacatgccctcagccagcaggagaggggtgatctagttt 254  Q
    ||||||| ||||||||| ||||||||||||||||| ||||    
T  1326879 ctacatgtcctcagccaacaggagaggggtgatctggttt 1326840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 37 - 168
Target Start/End: Original strand, 38457493 - 38457624
Alignment:
Q  37 cctttcaggacatatgctagtactctagatggatcatggccggcaaatacaagagggtatgtcacttgccatagtgggttattaggcagtacgagtatgt 136  Q
    |||||||||||||||||| ||||||  ||||||||||||||||||   ||| || |||  ||||||||||| ||| |||| |||||||||||| |||| |    
T  38457493 cctttcaggacatatgctggtactccggatggatcatggccggcagcgacatgatggtccgtcacttgccagagttggttcttaggcagtacgggtatat 38457592  T
Q  137 ctagactattcccaggcctcctacagacattg 168  Q
      |||||||||||||  |||||||||||||||    
T  38457593 tcagactattcccagcgctcctacagacattg 38457624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 69; Significance: 6e-31; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 64 - 247
Target Start/End: Original strand, 26653528 - 26653712
Alignment:
Q  64 gatggatcatggccggcaaatacaagagggtatgtcacttgccatagtgggttattaggcagtacgagtatgtctagactattcccaggcctcctacaga 163  Q
    |||||||||||||||||||  || ||||||| |||||||||||| |  ||||| |||||||||||| ||||||| ||||||||||||| ||| ||||| |    
T  26653528 gatggatcatggccggcaatgactagagggtctgtcacttgccagaacgggttcttaggcagtacgggtatgtccagactattcccagaccttctacata 26653627  T
Q  164 cattgggcctcttacggcaggggacgtagctatggccttcgcagagttt-ctctacatgccctcagccagcaggagaggggtgat 247  Q
    ||||||||||||| | | ||  ||||| || ||| ||||    |||||| ||||||||| ||||| |||||||||||||||||||    
T  26653628 cattgggcctcttgcagtagatgacgtggcaatgaccttgatggagtttgctctacatgtcctcaaccagcaggagaggggtgat 26653712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 64 - 247
Target Start/End: Original strand, 26925113 - 26925297
Alignment:
Q  64 gatggatcatggccggcaaatacaagagggtatgtcacttgccatagtgggttattaggcagtacgagtatgtctagactattcccaggcctcctacaga 163  Q
    |||||||||||||||||||  || ||||||| |||||||||||| |  ||||| |||||||||||| ||||||| ||||||||||||| ||| ||||| |    
T  26925113 gatggatcatggccggcaatgactagagggtctgtcacttgccagaacgggttcttaggcagtacgggtatgtccagactattcccagaccttctacata 26925212  T
Q  164 cattgggcctcttacggcaggggacgtagctatggccttcgcagagttt-ctctacatgccctcagccagcaggagaggggtgat 247  Q
    ||||||||||||| | | ||  ||||| || ||| ||||    |||||| ||||||||| ||||| |||||||||||||||||||    
T  26925213 cattgggcctcttgcagtagatgacgtggcaatgaccttgatggagtttgctctacatgtcctcaaccagcaggagaggggtgat 26925297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 38 - 244
Target Start/End: Original strand, 13274093 - 13274300
Alignment:
Q  38 ctttcaggacatatgctagtactctagatggatcatggccggcaaatacaagagggtatgtcacttgccatagtgggttattaggcagtacgagtatgtc 137  Q
    |||| |||||||||||| |||||| |||||||||||||||||||   ||| ||  ||  ||||||||||| || ||||| |||||||||||| |||||||    
T  13274093 cttttaggacatatgctggtactccagatggatcatggccggcagcgacaggattgtccgtcacttgccagagcgggttcttaggcagtacgggtatgtc 13274192  T
Q  138 tagactattcccaggcctcctacagacattgggcctcttacggcaggggacgtagctatggccttcgcagag-tttctctacatgccctcagccagcagg 236  Q
     |||||||||||||| ||||||||| ||||| || | || |||  |  ||||| ||   ||||||| ||||| |||||||||||| ||||||||| ||||    
T  13274193 cagactattcccagggctcctacagccattgagcttattgcggtggatgacgtggcctaggccttcacagagttttctctacatgtcctcagccatcagg 13274292  T
Q  237 agaggggt 244  Q
    | ||||||    
T  13274293 ataggggt 13274300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 28 - 168
Target Start/End: Original strand, 2742997 - 2743137
Alignment:
Q  28 acattacgtcctttcaggacatatgctagtactctagatggatcatggccggcaaatacaagagggtatgtcacttgccatagtgggttattaggcagta 127  Q
    |||| ||| |||||||||||||||||| ||||||  ||||||||||| ||||||   ||| || |||   ||||||| || || ||||| ||||| ||||    
T  2742997 acatcacgccctttcaggacatatgctggtactccggatggatcatgaccggcagcgacaggatggtccatcacttgtcagagcgggttcttaggaagta 2743096  T
Q  128 cgagtatgtctagactattcccaggcctcctacagacattg 168  Q
    || ||||||| | ||||||| |||| |||||||||||||||    
T  2743097 cgggtatgtccaaactattctcagggctcctacagacattg 2743137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 112 - 168
Target Start/End: Original strand, 21101423 - 21101479
Alignment:
Q  112 gggttattaggcagtacgagtatgtctagactattcccaggcctcctacagacattg 168  Q
    ||||| |||||||||||| ||||||| |||||||||| ||| |||||||||||||||    
T  21101423 gggttcttaggcagtacgtgtatgtccagactattcctagggctcctacagacattg 21101479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 257 - 321
Target Start/End: Original strand, 26653769 - 26653833
Alignment:
Q  257 tagagtatcacatcctattatgaacctccatgcgtccattcctgactacacagttgatgtccatc 321  Q
    ||||||||||||||||||| |||||| || ||   |||||||||||||||||||||||| |||||    
T  26653769 tagagtatcacatcctattgtgaacccccctgtagccattcctgactacacagttgatgcccatc 26653833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 257 - 321
Target Start/End: Original strand, 26925354 - 26925418
Alignment:
Q  257 tagagtatcacatcctattatgaacctccatgcgtccattcctgactacacagttgatgtccatc 321  Q
    ||||||||||||||||||| |||||| || ||   |||||||||||||||||||||||| |||||    
T  26925354 tagagtatcacatcctattgtgaacccccctgtagccattcctgactacacagttgatgcccatc 26925418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 39 - 160
Target Start/End: Complemental strand, 24209332 - 24209211
Alignment:
Q  39 tttcaggacatatgctagtactctagatggatcatggccggcaaatacaagagggtatgtcacttgccatagtgggttattaggcagtacgagtatgtct 138  Q
    |||| ||||||||||| ||||||  ||||||||||| ||| |||| ||| || |    ||||||||||| || ||||| | ||||||||||| |||| ||    
T  24209332 tttcgggacatatgctggtactccggatggatcatgaccgacaaagacaggatgtgccgtcacttgccagagcgggttctgaggcagtacgactatgcct 24209233  T
Q  139 agactattcccaggcctcctac 160  Q
    |||| |||| ||| ||||||||    
T  24209232 agaccattcacagacctcctac 24209211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 257 - 312
Target Start/End: Original strand, 21101616 - 21101672
Alignment:
Q  257 tagagtatcacatcctattatgaacctccat-gcgtccattcctgactacacagttg 312  Q
    ||||||||| ||||||||| |||||| || | ||| |||||||||||||||||||||    
T  21101616 tagagtatcgcatcctattgtgaaccccccttgcggccattcctgactacacagttg 21101672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 63; Significance: 2e-27; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 28 - 253
Target Start/End: Complemental strand, 37227947 - 37227721
Alignment:
Q  28 acattacgtcctttcaggacatatgctagtactctagatggatcatggccggcaaatacaagagggtatgtcacttgccatagtgggttattaggcagta 127  Q
    |||| ||| ||||| |||||||||||||||||||  ||||||||||||||| ||   ||| || |||   |||||||||| || ||||| ||||||||||    
T  37227947 acatcacgcccttttaggacatatgctagtactccggatggatcatggccgacatcgacaggatggtccctcacttgccagagcgggttcttaggcagta 37227848  T
Q  128 cgagtatgtctagactattcccaggcctcctacagacattgggcctcttacggcaggggacgtagctatggccttcgcagagttt-ctctacatgccctc 226  Q
    || ||||||| |||||||||||||| ||||||||||||||| || | || |||| |  ||||| ||   ||||||| | |||||| ||||||||| ||||    
T  37227847 cgggtatgtccagactattcccagggctcctacagacattgagcttattgcggcggatgacgtggcccaggccttcacggagtttgctctacatgtcctc 37227748  T
Q  227 agccagcaggagaggggtgatctagtt 253  Q
    ||||| || || |||||| ||| ||||    
T  37227747 agccatcaagataggggtcatccagtt 37227721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 37 - 183
Target Start/End: Original strand, 14096700 - 14096846
Alignment:
Q  37 cctttcaggacatatgctagtactctagatggatcatggccggcaaatacaagagggtatgtcacttgccatagtgggttattaggcagtacgagtatgt 136  Q
    |||||||||||||| |||||||||| |||||||||||||||| ||   |||  | |||  ||||||||||| || || || |||||||||||  ||||||    
T  14096700 cctttcaggacataagctagtactccagatggatcatggccgacagcgacataatggtccgtcacttgccagagcggtttcttaggcagtacaggtatgt 14096799  T
Q  137 ctagactattcccaggcctcctacagacattgggcctcttacggcag 183  Q
    | |||||||||||  ||||||||||||||||| || |||| ||||||    
T  14096800 ccagactattcccttgcctcctacagacattgagcttcttgcggcag 14096846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 257 - 304
Target Start/End: Complemental strand, 37227670 - 37227623
Alignment:
Q  257 tagagtatcacatcctattatgaacctccatgcgtccattcctgacta 304  Q
    ||||||||||||||||||| |||||| || |||| |||||||||||||    
T  37227670 tagagtatcacatcctattgtgaacccccctgcggccattcctgacta 37227623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 62; Significance: 9e-27; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 37 - 253
Target Start/End: Complemental strand, 31117103 - 31116886
Alignment:
Q  37 cctttcaggacatatgctagtactctagatggatcatggccggcaaatacaagagggtatgtcacttgccatagtgggttattaggcagtacgagtatgt 136  Q
    |||||||||| ||||||| |||||   ||||||||||||||| || | | | || ||| |||||||||||| ||| |||| |||||||||||| ||||||    
T  31117103 cctttcaggatatatgctggtacttcggatggatcatggccgacagagataggatggtctgtcacttgccagagtcggttcttaggcagtacgggtatgt 31117004  T
Q  137 ctagactattcccaggcctcctacagacattgggcctcttacggcaggggacgtagctatggccttcgcagagttt-ctctacatgccctcagccagcag 235  Q
    | ||||    |||||||||||||||||||||  ||||||||||||||  ||||| ||   | |||||  ||||||| ||||||||| ||||||||| |||    
T  31117003 ccagacacggcccaggcctcctacagacattaagcctcttacggcagatgacgtggcccagaccttcatagagtttgctctacatgtcctcagccatcag 31116904  T
Q  236 gagaggggtgatctagtt 253  Q
     |||||||| ||| ||||    
T  31116903 cagaggggttatccagtt 31116886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 16 - 147
Target Start/End: Original strand, 28035635 - 28035766
Alignment:
Q  16 agagacaacaagacattacgtcctttcaggacatatgctagtactctagatggatcatggccggcaaatacaagagggtatgtcacttgccatagtgggt 115  Q
    |||||| |||| |||| ||| ||||||| |||||||||| ||||||  ||| ||||||||||||||   ||| || |||  ||||||||| | || ||||    
T  28035635 agagacgacaacacatcacgccctttcaagacatatgctggtactccggatagatcatggccggcagcgacatgatggtccgtcacttgctagagcgggt 28035734  T
Q  116 tattaggcagtacgagtatgtctagactattc 147  Q
    | |||||||||| | ||||||| |||||||||    
T  28035735 tcttaggcagtaggggtatgtccagactattc 28035766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 257 - 304
Target Start/End: Original strand, 28035925 - 28035972
Alignment:
Q  257 tagagtatcacatcctattatgaacctccatgcgtccattcctgacta 304  Q
    ||||||||||||||||||| |||||| ||||||| |||||||||||||    
T  28035925 tagagtatcacatcctattgtgaacccccatgcggccattcctgacta 28035972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 257 - 315
Target Start/End: Complemental strand, 31116835 - 31116777
Alignment:
Q  257 tagagtatcacatcctattatgaacctccatgcgtccattcctgactacacagttgatg 315  Q
    ||||||||||||||||||| |||||| || |||| |||||||||||||| ||| |||||    
T  31116835 tagagtatcacatcctattgtgaacccccctgcggccattcctgactacgcagctgatg 31116777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 59; Significance: 6e-25; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 37 - 159
Target Start/End: Original strand, 25147344 - 25147466
Alignment:
Q  37 cctttcaggacatatgctagtactctagatggatcatggccggcaaatacaagagggtatgtcacttgccatagtgggttattaggcagtacgagtatgt 136  Q
    |||||||||||||||||| ||||||  ||||||||||||||||||   ||| || ||| |||||||||||| || ||||| |||||||||||| ||||||    
T  25147344 cctttcaggacatatgctggtactccggatggatcatggccggcagcgacaggatggtctgtcacttgccagagcgggttcttaggcagtacgggtatgt 25147443  T
Q  137 ctagactattcccaggcctccta 159  Q
    | |||||||||||| | ||||||    
T  25147444 ccagactattcccatggctccta 25147466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 28 - 244
Target Start/End: Complemental strand, 42705356 - 42705139
Alignment:
Q  28 acattacgtcctttcaggacatatgctagtactctagatggatcatggccggcaaatacaagagggtatgtcacttgccatagtgggttattaggcagta 127  Q
    |||| ||| |||||||||||||||| | ||||||  |||||||||||| |||||   ||| || |||  ||||||||||| || ||||| ||||||||||    
T  42705356 acatcacgccctttcaggacatatgttggtactccggatggatcatgggcggcagcgacatgaaggtccgtcacttgccagagcgggttcttaggcagta 42705257  T
Q  128 cgagtatgtctagactattcccaggcctcctacagacattgggcctcttacggcaggggacgtagctatggccttcgcagagttt-ctctacatgccctc 226  Q
    || | ||||| | |||||||||||| ||||||||||||||| || | || || |||  ||||| ||   ||||||| | |||||| ||||||||| ||||    
T  42705256 cgggcatgtccatactattcccagggctcctacagacattgagcttattgcgacagatgacgtggcccaggccttcacggagtttgctctacatgtcctc 42705157  T
Q  227 agccagcaggagaggggt 244  Q
    ||||| ||| ||||||||    
T  42705156 agccatcagcagaggggt 42705139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 27 - 168
Target Start/End: Original strand, 39465347 - 39465486
Alignment:
Q  27 gacattacgtcctttcaggacatatgctagtactctagatggatcatggccggcaaatacaagagggtatgtcacttgccatagtgggttattaggcagt 126  Q
    ||||| ||| |||||||||||||||||||||||||  ||||||||||||||||||   ||| || |||  || |||||||| ||  |||| |||||||||    
T  39465347 gacatcacgccctttcaggacatatgctagtactccggatggatcatggccggcagcgacaggatggtccgtaacttgccagagccggttcttaggcagt 39465446  T
Q  127 acgagtatgtctagactattcccaggcctcctacagacattg 168  Q
    | | |||||||  |||||||| |||| || ||||||||||||    
T  39465447 atgggtatgtc--gactattctcagggcttctacagacattg 39465486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 249 - 304
Target Start/End: Original strand, 3681088 - 3681143
Alignment:
Q  249 tagttttgtagagtatcacatcctattatgaacctccatgcgtccattcctgacta 304  Q
    ||||||| |||||||||||||||||||||||||| || |||| |||||||||||||    
T  3681088 tagttttttagagtatcacatcctattatgaacccccctgcgaccattcctgacta 3681143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 257 - 304
Target Start/End: Original strand, 25147612 - 25147659
Alignment:
Q  257 tagagtatcacatcctattatgaacctccatgcgtccattcctgacta 304  Q
    ||||||||||||||||||| |||||| || |||| |||||||||||||    
T  25147612 tagagtatcacatcctattgtgaacccccctgcggccattcctgacta 25147659  T

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Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 257 - 304
Target Start/End: Complemental strand, 32305637 - 32305590
Alignment:
Q  257 tagagtatcacatcctattatgaacctccatgcgtccattcctgacta 304  Q
    ||||||||||||||||||| |||||| ||||| | |||||||||||||    
T  32305637 tagagtatcacatcctattgtgaacccccatgtggccattcctgacta 32305590  T

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Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 257 - 304
Target Start/End: Original strand, 39465623 - 39465670
Alignment:
Q  257 tagagtatcacatcctattatgaacctccatgcgtccattcctgacta 304  Q
    ||||||||||||||||||| |||||| || |||| |||||||||||||    
T  39465623 tagagtatcacatcctattgtgaacccccctgcggccattcctgacta 39465670  T

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Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 28 - 134
Target Start/End: Complemental strand, 32307986 - 32307880
Alignment:
Q  28 acattacgtcctttcaggacatatgctagtactctagatggatcatggccggcaaatacaagagggtatgtcacttgccatagtgggttattaggcagta 127  Q
    |||| ||| ||||| |||||||||||| ||||||  ||||||||||||||| ||   ||| || |||  ||||||||||  || ||||| ||||||||||    
T  32307986 acatcacgccctttgaggacatatgctggtactccggatggatcatggccgacagcgacaggatggtccgtcacttgcctgagcgggttcttaggcagta 32307887  T
Q  128 cgagtat 134  Q
    || ||||    
T  32307886 cgggtat 32307880  T

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Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 28 - 121
Target Start/End: Original strand, 3680825 - 3680918
Alignment:
Q  28 acattacgtcctttcaggacatatgctagtactctagatggatcatggccggcaaatacaagagggtatgtcacttgccatagtgggttattag 121  Q
    |||| ||| ||||| |||||| || |||||||||  ||||||||||||||||||   |||||| |||  ||||||||||| || ||||| ||||    
T  3680825 acatcacgccctttgaggacacatactagtactccggatggatcatggccggcagcgacaagatggtccgtcacttgccagagcgggttcttag 3680918  T

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Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 131 - 168
Target Start/End: Complemental strand, 32305811 - 32305774
Alignment:
Q  131 gtatgtctagactattcccaggcctcctacagacattg 168  Q
    ||||||| |||||||||||||| |||||||||||||||    
T  32305811 gtatgtccagactattcccagggctcctacagacattg 32305774  T

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Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 257 - 301
Target Start/End: Complemental strand, 42705079 - 42705035
Alignment:
Q  257 tagagtatcacatcctattatgaacctccatgcgtccattcctga 301  Q
    ||||||||||||||||||| |||||| || |||| ||||||||||    
T  42705079 tagagtatcacatcctattgtgaacccccctgcggccattcctga 42705035  T

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Target: scaffold0251 (Bit Score: 57; Significance: 9e-24; HSPs: 2)
Name: scaffold0251
Description:

Target: scaffold0251; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 37 - 248
Target Start/End: Complemental strand, 17192 - 16977
Alignment:
Q  37 cctttcaggacatatgctagtactctagatggatcatggccggcaaatacaagagggtatgtcacttgccatagtgggttattaggcagtacgagtatgt 136  Q
    |||||||||||||||||| ||||||| |||||||||||||| |||   ||| || |||  ||||||| ||| || ||||| ||||| |||||| ||||||    
T  17192 cctttcaggacatatgctggtactctggatggatcatggccagcagcgacaggatggtccgtcactttccagagcgggttgttaggtagtacgggtatgt 17093  T
Q  137 ctagactattcccaggcctcctacagacattgggcctcttacggcaggggacgtag-cta--tggccttcgcagagttt-ctctacatgccctcagccag 232  Q
    | |||||||||| ||| ||||||||||||||  || | || ||||||  ||| | | |||  || ||||| |||||||| ||||||||| |||||||||     
T  17092 ccagactattccgagggctcctacagacatttagcttattgcggcagatgacatggcctaggtgcccttcacagagtttgctctacatgtcctcagccat 16993  T
Q  233 caggagaggggtgatc 248  Q
    ||| ||||||||||||    
T  16992 cagtagaggggtgatc 16977  T

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Target: scaffold0251; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 257 - 304
Target Start/End: Complemental strand, 16922 - 16875
Alignment:
Q  257 tagagtatcacatcctattatgaacctccatgcgtccattcctgacta 304  Q
    ||||||||||||||||||| |||||| || |||| |||||||||||||    
T  16922 tagagtatcacatcctattgtgaacccccctgcggccattcctgacta 16875  T

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Target: scaffold0408 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: scaffold0408
Description:

Target: scaffold0408; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 37 - 183
Target Start/End: Original strand, 7042 - 7188
Alignment:
Q  37 cctttcaggacatatgctagtactctagatggatcatggccggcaaatacaagagggtatgtcacttgccatagtgggttattaggcagtacgagtatgt 136  Q
    |||||||||||||| |||||||||| |||||||||||||||| ||   |||  | |||  ||||||||||| || || || |||||||||||  ||||||    
T  7042 cctttcaggacataagctagtactccagatggatcatggccgacagcgacataatggtccgtcacttgccagagcggtttcttaggcagtacaggtatgt 7141  T
Q  137 ctagactattcccaggcctcctacagacattgggcctcttacggcag 183  Q
    | |||||||||||  ||||||||||||||||| || |||| ||||||    
T  7142 ccagactattcccttgcctcctacagacattgagcttcttgcggcag 7188  T

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Target: chr6 (Bit Score: 49; Significance: 5e-19; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 28 - 168
Target Start/End: Complemental strand, 6285954 - 6285814
Alignment:
Q  28 acattacgtcctttcaggacatatgctagtactctagatggatcatggccggcaaatacaagagggtatgtcacttgccatagtgggttattaggcagta 127  Q
    |||| ||| ||||| |||||||||||| |||||| ||||||||||||||  |||   | | || |||  |||||||| || || ||||| ||||||||||    
T  6285954 acatcacgccctttgaggacatatgctggtactccagatggatcatggctagcagcgataggatggtccgtcacttggcagagcgggttcttaggcagta 6285855  T
Q  128 cgagtatgtctagactattcccaggcctcctacagacattg 168  Q
    || ||||||| |||||||||||||| |||||| ||||||||    
T  6285854 cgggtatgtccagactattcccagggctcctatagacattg 6285814  T

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Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 64 - 181
Target Start/End: Original strand, 35014337 - 35014454
Alignment:
Q  64 gatggatcatggccggcaaatacaagagggtatgtcacttgccatagtgggttattaggcagtacgagtatgtctagactattcccaggcctcctacaga 163  Q
    |||||||||||| ||||||  ||| || |||  ||||||||||| || ||||| |||||||||||| ||||||| ||||||||| |||| ||| |||| |    
T  35014337 gatggatcatggtcggcaacgacaggatggtccgtcacttgccagagcgggttcttaggcagtacgggtatgtccagactattcacagggctcgtacata 35014436  T
Q  164 cattgggcctcttacggc 181  Q
    ||||| || | |||||||    
T  35014437 cattgagcttattacggc 35014454  T

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Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 39 - 129
Target Start/End: Original strand, 2029728 - 2029818
Alignment:
Q  39 tttcaggacatatgctagtactctagatggatcatggccggcaaatacaagagggtatgtcacttgccatagtgggttattaggcagtacg 129  Q
    ||||||||| | |||| ||| ||| |||||||||||||||||||| | |||| |||  ||||||||||| || ||||| | ||||||||||    
T  2029728 tttcaggacgtgtgctggtattctggatggatcatggccggcaaacagaagatggtgcgtcacttgccagagcgggttctgaggcagtacg 2029818  T

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Target: scaffold0007 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 97 - 168
Target Start/End: Complemental strand, 257416 - 257345
Alignment:
Q  97 gtcacttgccatagtgggttattaggcagtacgagtatgtctagactattcccaggcctcctacagacattg 168  Q
    ||||||||||| || ||||| ||||| |||||| ||||||| ||||||||| |||| |||| ||||||||||    
T  257416 gtcacttgccagagcgggttcttaggtagtacgggtatgtccagactattctcagggctcccacagacattg 257345  T

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Target: scaffold0010 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 39 - 137
Target Start/End: Complemental strand, 32451 - 32353
Alignment:
Q  39 tttcaggacatatgctagtactctagatggatcatggccggcaaatacaagagggtatgtcacttgccatagtgggttattaggcagtacgagtatgtc 137  Q
    |||||||||||||||| |||||| |||||||||||||||  || | ||| || |||  ||||||||||| || ||||| ||||| |||||  |||||||    
T  32451 tttcaggacatatgctggtactccagatggatcatggccaacagagacatgatggtccgtcacttgccagagcgggttcttaggtagtacaggtatgtc 32353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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