View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8617_low_8 (Length: 288)
Name: NF8617_low_8
Description: NF8617
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8617_low_8 |
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Alignment Details
Target: chr6 (Bit Score: 124; Significance: 8e-64; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 124; E-Value: 8e-64
Query Start/End: Original strand, 8 - 147
Target Start/End: Complemental strand, 14518301 - 14518162
Alignment:
| Q |
8 |
aggaggagcacagaatcgaactctagacaagaattggtggcgcactgcaacaaaggaacaaaaactaagaccaaaatgggatttttcgaaagaatggaaa |
107 |
Q |
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| T |
14518301 |
aggaggagaatagaatcgaactctagacaagagttggtggcgcactgcaacaaaggaacaaaaactaagaccaaaatgggattcttcgaaagaatggaaa |
14518202 |
T |
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| Q |
108 |
agatgagtgtatgtatctttatattcgcaaagtagtttcc |
147 |
Q |
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| T |
14518201 |
agatgagtgtatgtatctttatattcgcaaagtagtttcc |
14518162 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 8 - 114
Target Start/End: Complemental strand, 14535806 - 14535700
Alignment:
| Q |
8 |
aggaggagcacagaatcgaactctagacaagaattggtggcgcactgcaacaaaggaacaaaaactaagaccaaaatgggatttttcgaaagaatggaaa |
107 |
Q |
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| T |
14535806 |
aggaggagaatagaatcgaaatctggacaagaattggtggcagactgccacacaggaacaaaaactaagaccaaaatgggattttttgaaagaatggaaa |
14535707 |
T |
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| Q |
108 |
agatgag |
114 |
Q |
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| T |
14535706 |
aggtgag |
14535700 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 213 - 272
Target Start/End: Complemental strand, 14518096 - 14518037
Alignment:
| Q |
213 |
acatcatacattcctctctagggaaaacaacgcgcaagacgatctgtgtcgggttcctct |
272 |
Q |
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| T |
14518096 |
acatcatacattcctctccagggaaaacaacgcgcaagacgatctgtgtcgggttcctct |
14518037 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 213 - 272
Target Start/End: Complemental strand, 14531148 - 14531089
Alignment:
| Q |
213 |
acatcatacattcctctctagggaaaacaacgcgcaagacgatctgtgtcgggttcctct |
272 |
Q |
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| T |
14531148 |
acatcatatattcctctccagggaaaacaacgcgccaaacgatctgtgttgggttcctct |
14531089 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 213 - 272
Target Start/End: Complemental strand, 14535655 - 14535596
Alignment:
| Q |
213 |
acatcatacattcctctctagggaaaacaacgcgcaagacgatctgtgtcgggttcctct |
272 |
Q |
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| T |
14535655 |
acatcatatattcctcttcagggaaaacaacgcgccaaacgatctgtgttgggttcctct |
14535596 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 47; Significance: 7e-18; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 33 - 115
Target Start/End: Original strand, 37338146 - 37338228
Alignment:
| Q |
33 |
gacaagaattggtggcgcactgcaacaaaggaacaaaaactaagaccaaaatgggatttttcgaaagaatggaaaagatgagt |
115 |
Q |
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| T |
37338146 |
gacaggaattggtggtgaactgccataaaggaacaaaaactaaaaccaaaatgggattcttcgaaagaatgcaaaaggtgagt |
37338228 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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