View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8618_high_1 (Length: 401)
Name: NF8618_high_1
Description: NF8618
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8618_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 183; Significance: 7e-99; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 183; E-Value: 7e-99
Query Start/End: Original strand, 16 - 385
Target Start/End: Original strand, 20438138 - 20438508
Alignment:
| Q |
16 |
acgcacataggggcatcaattccatgcaacttcacattggaatataacactccttcattatggatatgctcatta-------aaactcactcattaagct |
108 |
Q |
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| T |
20438138 |
acgcacataggggcatccattccaatcaacttcacattgcaatataacactccttcactatggatatgcacattataagttaaaactcactcactaagct |
20438237 |
T |
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| Q |
109 |
ttgatgacttaaatttatttaatggccaagaaaagctcagaaaagagctgtatcaatatcaatataaactataaagtagatgaaattctatactctgaca |
208 |
Q |
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| T |
20438238 |
ttgatgacttaaatttatttattgtgcaagaacagcttagaaaagagatgtatcaatatcaatata-------aagtagatgaaattgtatactccgaca |
20438330 |
T |
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| Q |
209 |
aatatggaagaacaaact-aaacatttacaagcaagacctacgcaggaaattttcgatttagaagcaacagttcctattcgataacagtnnnnnnnnnct |
307 |
Q |
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| T |
20438331 |
aatatggaagaacaagctaaaacatttacaggcaagtcctacgcagcaaagtttcaatttagaagcaataattcctattggataacagtaaaagaaaact |
20438430 |
T |
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| Q |
308 |
gactttgcacaagacttttactctatcagtgttaccacaatcttgttagtactgccggtacttatcagatgaatgaag |
385 |
Q |
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| T |
20438431 |
gactttgcacaagacttttaatctatcagtgttaccacaatctggttagtactgctggtacttatcagatgaatgaag |
20438508 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 61 - 176
Target Start/End: Original strand, 20277399 - 20277514
Alignment:
| Q |
61 |
aacactccttcattatggatatgctcattaaaactcactcattaagctttgatgacttaaatttatttaatggccaagaaaagctcagaaaagagctgta |
160 |
Q |
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| T |
20277399 |
aacactccttcattatggataagctcattaaaactcactcactaagctttgatgacttaaatttatttattgggcaagaacagctcaaaaaagagctgta |
20277498 |
T |
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| Q |
161 |
tcaatatcaatataaa |
176 |
Q |
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| T |
20277499 |
tcaatatcaatataaa |
20277514 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 19 - 296
Target Start/End: Original strand, 20460428 - 20460682
Alignment:
| Q |
19 |
cacataggggcatcaattccatgcaacttcacattggaatataacactccttcattatggatatgctcattaaaactcactcattaagctttgatgactt |
118 |
Q |
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| T |
20460428 |
cacataggggcatcaattccaatcaacttcacattggaatataacacgccttc-------------tc-ttaaaactcactcactaagctttgatgactt |
20460513 |
T |
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| Q |
119 |
aaatttatttaatggccaagaaaagctcagaaaagagctgtatcaatatcaatataaactataaagtagatgaaattctatactctgacaaatatggaag |
218 |
Q |
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| T |
20460514 |
aaatatttttattgggcaagaacagctcaaaaaagagctgtatcaatatcaa-------tataaagtagatgaaattgtatactctgacaagtatggaac |
20460606 |
T |
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| Q |
219 |
aacaaactaaacatttacaagcaagacctacgcaggaaattttcgatttagaagcaacagttcctattcgataacagt |
296 |
Q |
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| T |
20460607 |
a--agactgaatatttacacgcaaatcctacacaggacagttttgatttagaagcaatagttcctattggataacagt |
20460682 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 21 - 155
Target Start/End: Original strand, 20449110 - 20449251
Alignment:
| Q |
21 |
cataggggcatcaattccatgcaacttcacattggaatataacactccttcattatggatatgctca-------ttaaaactcactcattaagctttgat |
113 |
Q |
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| T |
20449110 |
cataggggcatcaattccaatcaacttcacattgcaatataacactccttcactatggatatgcacattataagttaaaactcactcactaagctttgat |
20449209 |
T |
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| Q |
114 |
gacttaaatttatttaatggccaagaaaagctcagaaaagag |
155 |
Q |
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| T |
20449210 |
gacttaaatttatttattgtgcaagaacagctcagaaaagag |
20449251 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 105 - 167
Target Start/End: Original strand, 20442078 - 20442140
Alignment:
| Q |
105 |
agctttgatgacttaaatttatttaatggccaagaaaagctcagaaaagagctgtatcaatat |
167 |
Q |
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| T |
20442078 |
agctttgaagactaaaatttattgattgggcaagaacagctcaaaaaagagctgtatcaatat |
20442140 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 26 - 76
Target Start/End: Original strand, 20474709 - 20474759
Alignment:
| Q |
26 |
gggcatcaattccatgcaacttcacattggaatataacactccttcattat |
76 |
Q |
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| T |
20474709 |
gggcatcaattcaaatcaacttcacattgcaatataacactccttcattat |
20474759 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 88 - 126
Target Start/End: Original strand, 283511 - 283549
Alignment:
| Q |
88 |
ttaaaactcactcattaagctttgatgacttaaatttat |
126 |
Q |
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| T |
283511 |
ttaaaactcactcacaaagctttgatgacttaaatttat |
283549 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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