View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8618_low_1 (Length: 414)
Name: NF8618_low_1
Description: NF8618
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8618_low_1 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 353; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 1 - 409
Target Start/End: Original strand, 17740462 - 17740866
Alignment:
| Q |
1 |
catatagatatgatctcttatcacgacataatcacaatatgctcctaagagcagaagaaattattactacataattgtcatcttatccggagtagtgaat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
17740462 |
catatagatatgatctcttatcacgacataatcacaatatgctcctaagagcagaagaaattat-actacataattgtcatcttatccggagtagtgaat |
17740560 |
T |
|
| Q |
101 |
ctacaacgactgtcggatcccggagttgcttgaagacaatggaggatggcattgctacttcgagaggggctgtgttcgtgctaggactctaatgctcaag |
200 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
17740561 |
ctacaacgactgtcggatcccgaagttgcttgaagacaatggaggatggcattgctacttcgagaggggctatgttcgtgctaggactctaatgctcaag |
17740660 |
T |
|
| Q |
201 |
taaatgagggctttaggtgagtcaagagttgaactggaatagataacatacatttcaccaagggtcgaagacctttttgttgtgcgacaagtgtgagtta |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17740661 |
taaatgagggctttaggtgagtcaagagttgaactggaatagataacatacatttcaccaagggtcgaagacctttttgttgtgcgacaagtgtgag--- |
17740757 |
T |
|
| Q |
301 |
attagaaatctcgtattgcttagaaaaatggagttgaacacttaacaaattgaca-gacccataaactcaatgtcataaggattttggtaaatatgtgat |
399 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||| |||||| |
|
|
| T |
17740758 |
-ttagaaatctcgtattgcttagaaaaatggagttgaacacttaacaaattgacaggacccagaaactcaatgtcataaggattttggtaaacatgtgac |
17740856 |
T |
|
| Q |
400 |
gtccatctca |
409 |
Q |
| |
|
||||| |||| |
|
|
| T |
17740857 |
gtccaactca |
17740866 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University