View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8619_high_2 (Length: 414)
Name: NF8619_high_2
Description: NF8619
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8619_high_2 |
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Alignment Details
Target: chr5 (Bit Score: 366; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 5 - 412
Target Start/End: Original strand, 26422060 - 26422464
Alignment:
| Q |
5 |
acattaaaagaattgattactggaaatatcatggaacagggggagaaaacacctaagttagttattcattaagaaagacaattcatagaagagactatat |
104 |
Q |
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| T |
26422060 |
acattaaaagaattgattactggaaatattgtggaacagggggagaaaac---taagttagttattcattgagaaagacaattcatagaagagactatat |
26422156 |
T |
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| Q |
105 |
gagaagatgcttccaaactttaagactccagccggagaaaatagctgaagttcaggcatgtggtgatgcacattcagggaaagattaatattttagggat |
204 |
Q |
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| T |
26422157 |
gagaagatgcttccaaactttaagactccagccggagaaaatagctgaagttcaggcatgtggtgatgcacattcagggacagattaatattttagggat |
26422256 |
T |
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| Q |
205 |
aaaaaagaactcaaaggaaactgcaagtggaactaaaatctggagtacaaaagtgaatattggggaggaataaaattgaaaagggcgatatgagaatagt |
304 |
Q |
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| T |
26422257 |
aaaaaagaactcaaaggaaactgcaagtggaactaaaatctggagtacaaaagtgaatattggggaggaataaaattgaaaagggcgatatgagaatagt |
26422356 |
T |
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| Q |
305 |
ggtgtcaagtgggaggagtcagttgctggaattttgatgatgggcacaaattttttctgagtgaggagctttacttcaggttttgcgggaattttgatga |
404 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26422357 |
ggtgtcaagtgggaggagtcagttgcgggaattttgatgatgggcacaaatttcttctgagtgaggagctttacttcaggttttgcgggaattttgatga |
26422456 |
T |
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| Q |
405 |
tgtccatc |
412 |
Q |
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| T |
26422457 |
tggccatc |
26422464 |
T |
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