View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8619_high_5 (Length: 264)

Name: NF8619_high_5
Description: NF8619
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8619_high_5
NF8619_high_5
[»] chr3 (16 HSPs)
chr3 (17-241)||(10515956-10516181)
chr3 (5-241)||(11410830-11411069)
chr3 (5-238)||(43921723-43921956)
chr3 (117-244)||(10657329-10657457)
chr3 (111-241)||(26565447-26565577)
chr3 (100-157)||(27044218-27044275)
chr3 (124-218)||(21408750-21408844)
chr3 (193-241)||(49861116-49861164)
chr3 (192-241)||(14218546-14218595)
chr3 (99-141)||(27063988-27064030)
chr3 (95-128)||(49861210-49861243)
chr3 (102-158)||(17715718-17715774)
chr3 (102-158)||(19016947-19017003)
chr3 (195-239)||(27063889-27063933)
chr3 (193-241)||(27109302-27109350)
chr3 (193-225)||(27109700-27109732)
[»] chr5 (4 HSPs)
chr5 (5-249)||(40838040-40838286)
chr5 (103-163)||(38989134-38989195)
chr5 (5-107)||(32676424-32676528)
chr5 (200-241)||(32676610-32676651)
[»] chr7 (5 HSPs)
chr7 (24-247)||(10678433-10678658)
chr7 (41-241)||(37338578-37338779)
chr7 (102-166)||(45215897-45215961)
chr7 (55-168)||(22291029-22291143)
chr7 (197-241)||(46533000-46533044)
[»] chr8 (9 HSPs)
chr8 (5-237)||(15850242-15850478)
chr8 (27-241)||(18602871-18603086)
chr8 (75-165)||(15131815-15131905)
chr8 (75-151)||(31772664-31772740)
chr8 (75-141)||(28421288-28421354)
chr8 (195-245)||(1226198-1226248)
chr8 (197-251)||(28421177-28421231)
chr8 (198-251)||(15131941-15131994)
chr8 (101-141)||(18393439-18393479)
[»] chr4 (12 HSPs)
chr4 (17-251)||(17732910-17733148)
chr4 (75-241)||(40289003-40289168)
chr4 (102-166)||(54305841-54305905)
chr4 (5-151)||(658252-658401)
chr4 (193-252)||(3419987-3420046)
chr4 (105-166)||(45612316-45612377)
chr4 (192-236)||(31734644-31734688)
chr4 (100-149)||(18198688-18198737)
chr4 (75-147)||(55680921-55680993)
chr4 (193-245)||(658446-658498)
chr4 (75-166)||(29987892-29987982)
chr4 (100-149)||(44507913-44507962)
[»] chr6 (11 HSPs)
chr6 (85-244)||(57140-57300)
chr6 (75-241)||(12844049-12844217)
chr6 (102-251)||(14494315-14494465)
chr6 (110-241)||(17540163-17540295)
chr6 (102-166)||(19294551-19294615)
chr6 (55-147)||(34011035-34011128)
chr6 (55-147)||(34013722-34013815)
chr6 (104-241)||(34709098-34709238)
chr6 (5-140)||(1255438-1255575)
chr6 (105-158)||(14998569-14998622)
chr6 (197-241)||(1255633-1255677)
[»] chr1 (9 HSPs)
chr1 (5-240)||(48632363-48632597)
chr1 (78-163)||(23432095-23432180)
chr1 (46-251)||(18488344-18488551)
chr1 (85-239)||(32740995-32741149)
chr1 (205-241)||(126399-126435)
chr1 (195-241)||(7021538-7021584)
chr1 (102-147)||(3387883-3387928)
chr1 (110-162)||(126456-126508)
chr1 (111-151)||(3955178-3955218)
[»] chr2 (14 HSPs)
chr2 (102-251)||(9929785-9929938)
chr2 (102-251)||(34409458-34409607)
chr2 (102-251)||(26576197-26576349)
chr2 (75-166)||(32200690-32200781)
chr2 (103-241)||(13039025-13039164)
chr2 (85-158)||(41849228-41849301)
chr2 (99-163)||(17651476-17651540)
chr2 (197-241)||(27004184-27004228)
chr2 (105-158)||(4747960-4748013)
chr2 (199-240)||(32200816-32200857)
chr2 (99-162)||(18724618-18724681)
chr2 (204-241)||(44649945-44649982)
chr2 (102-162)||(15989943-15990003)
chr2 (195-239)||(15990038-15990082)
[»] scaffold0019 (1 HSPs)
scaffold0019 (195-244)||(70040-70089)
[»] scaffold0002 (1 HSPs)
scaffold0002 (100-149)||(289060-289109)


Alignment Details
Target: chr3 (Bit Score: 134; Significance: 8e-70; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 134; E-Value: 8e-70
Query Start/End: Original strand, 17 - 241
Target Start/End: Original strand, 10515956 - 10516181
Alignment:
Q  17 ctatgacacttgtctgatacgtgttggataactaaaatcggtgtcctaaataaaattgtttt--ctttgattcgacatttctaggaccggtgtccgacac 114  Q
    |||||||||||||| ||||||||||||| |||||||||| ||||| ||||||||||||||||  ||||||||||||| |||||||  |||||||||||||    
T  10515956 ctatgacacttgtccgatacgtgttggacaactaaaatcagtgtcttaaataaaattgttttttctttgattcgacacttctagggtcggtgtccgacac 10516055  T
Q  115 ctatataacactcatacgagccgtgtcagacaactcatacaaatatctaaaatannnnnnnctctcttactttcatgtaccgtagatacaagagttacat 214  Q
    || ||||| ||||||||||| ||||||||||||||||| |||||||||||||||       ||||||||||| |||||||||||||||||||||||||||    
T  10516056 ctgtataatactcatacgagtcgtgtcagacaactcatgcaaatatctaaaata-ttttttctctcttacttccatgtaccgtagatacaagagttacat 10516154  T
Q  215 atgttttgaaaaatgttgatcaattag 241  Q
    ||||||| ||||||||| |||||||||    
T  10516155 atgttttaaaaaatgttaatcaattag 10516181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 5 - 241
Target Start/End: Complemental strand, 11411069 - 11410830
Alignment:
Q  5 tgtccaacacttctatgacacttgtctgatacgtgttggataactaaaatcggtgtcctaaataaaattgttttctttg----attcgacatttctagga 100  Q
    ||||| ||||| ||||||||||||||||| || ||| ||| ||||||||||| |||||||||||||||  |||| |||     |||||||| | ||||||    
T  11411069 tgtccgacactcctatgacacttgtctgacacatgtcggacaactaaaatcgatgtcctaaataaaatatttttttttacttaattcgacactcctagga 11410970  T
Q  101 ccggtgtccgacacctatataacactcatacgagccgtgtcagacaactcatacaaatatctaaaatannnnnnnctctcttactttcatgtaccgtaga 200  Q
    |||||||| ||||||||||||||||||||||||||| |||||||||||| || |||||||| |||| |       ||||||||||| ||  |||||||||    
T  11410969 ccggtgtc-gacacctatataacactcatacgagccatgtcagacaacttatgcaaatatcgaaaacatttttttctctcttacttccacataccgtaga 11410871  T
Q  201 tacaagagttacatatgttttgaaaaatgttgatcaattag 241  Q
    ||||||||||||||||||||||| |||||||||||||||||    
T  11410870 tacaagagttacatatgttttgagaaatgttgatcaattag 11410830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 5 - 238
Target Start/End: Original strand, 43921723 - 43921956
Alignment:
Q  5 tgtccaacacttctatgacacttgtctgatacgtgttggataactaaaatcggtgtcctaaataaaattg---ttttctttgattcgacatttctaggac 101  Q
    ||||| ||||| ||||||||||||||||| |||||| ||| ||||||||||||||||||| |||||||||   |||||||| |||| ||| | |||||||    
T  43921723 tgtccgacactcctatgacacttgtctgacacgtgtcggacaactaaaatcggtgtcctagataaaattgtttttttctttaattcaacactcctaggac 43921822  T
Q  102 cggtgtccgacacctatataacactcatacgagccgtgtcagacaactcatacaaatatctaaaatannnnnnnctctcttactttcatgtaccgtagat 201  Q
    ||||||||||||||  |||||||||||| ||| |||| || ||||||||| |||||||||||||  |       ||||||| ||| ||  ||| ||||||    
T  43921823 cggtgtccgacacc--tataacactcat-cgaaccgtttcggacaactcagacaaatatctaaagcatttttttctctcttgcttccacatacagtagat 43921919  T
Q  202 acaagagttacatatgttttgaaaaatgttgatcaat 238  Q
    |||||||||||||||||||||| ||||||||||||||    
T  43921920 acaagagttacatatgttttgagaaatgttgatcaat 43921956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 117 - 244
Target Start/End: Original strand, 10657329 - 10657457
Alignment:
Q  117 atataacactcatacgagccgtgtcagacaactcatacaaatatctaaaatannnnnnn-ctctcttactttcatgtaccgtagatacaagagttacata 215  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||        ||||||||||| |||||||||||||||||||| |||||||    
T  10657329 atataacactcatacgagccgtgtcagacaactcatataaatatctaaaatattttttttctctcttacttccatgtaccgtagatacaagatttacata 10657428  T
Q  216 tgttttgaaaaatgttgatcaattagagg 244  Q
    |||||||||||||||||||||||||||||    
T  10657429 tgttttgaaaaatgttgatcaattagagg 10657457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 111 - 241
Target Start/End: Complemental strand, 26565577 - 26565447
Alignment:
Q  111 acacctatataacactcatacgagccgtgtcagacaactcatacaaatatctaaaatannnnnnnctctcttactttcatgtaccgtagatacaagagtt 210  Q
    ||||||||||||||||||||||||||||||| ||||||||| |||||||||||||| |       ||||||| ||| ||  || | |||||| |||||||    
T  26565577 acacctatataacactcatacgagccgtgtcggacaactcagacaaatatctaaaacatttttttctctcttgcttccacatatcttagatataagagtt 26565478  T
Q  211 acatatgttttgaaaaatgttgatcaattag 241  Q
    ||||||||||| | |||||||||||| ||||    
T  26565477 acatatgtttttagaaatgttgatcatttag 26565447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 100 - 157
Target Start/End: Complemental strand, 27044275 - 27044218
Alignment:
Q  100 accggtgtccgacacctatataacactcatacgagccgtgtcagacaactcatacaaa 157  Q
    ||||||||||||||||| ||||||||||||||||||||||||  |||||||| |||||    
T  27044275 accggtgtccgacacctgtataacactcatacgagccgtgtcgaacaactcagacaaa 27044218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 124 - 218
Target Start/End: Original strand, 21408750 - 21408844
Alignment:
Q  124 actcatacgagccgtgtcagacaactcatacaaatatctaaaatannnnnnnctctcttactttcatgtaccgtagatacaagagttacatatgt 218  Q
    |||||||||||||||||| ||||||||| |||||||||||||| |       ||||||| ||| ||  || | ||||||||||||||||||||||    
T  21408750 actcatacgagccgtgtcggacaactcaaacaaatatctaaaacatttttttctctcttgcttccacataacttagatacaagagttacatatgt 21408844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 193 - 241
Target Start/End: Complemental strand, 49861164 - 49861116
Alignment:
Q  193 accgtagatacaagagttacatatgttttgaaaaatgttgatcaattag 241  Q
    ||||||||||||||||||||||| ||||||| | |||||||||||||||    
T  49861164 accgtagatacaagagttacataagttttgagatatgttgatcaattag 49861116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 192 - 241
Target Start/End: Complemental strand, 14218595 - 14218546
Alignment:
Q  192 taccgtagatacaagagttacatatgttttgaaaaatgttgatcaattag 241  Q
    ||||||||| |||||||| |||||| |||||| |||||||||||||||||    
T  14218595 taccgtagacacaagagtcacatatattttgataaatgttgatcaattag 14218546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 99 - 141
Target Start/End: Complemental strand, 27064030 - 27063988
Alignment:
Q  99 gaccggtgtccgacacctatataacactcatacgagccgtgtc 141  Q
    |||||||||| |||||||||||||||||| ||||||| |||||    
T  27064030 gaccggtgtctgacacctatataacactcttacgagctgtgtc 27063988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 95 - 128
Target Start/End: Complemental strand, 49861243 - 49861210
Alignment:
Q  95 ctaggaccggtgtccgacacctatataacactca 128  Q
    |||||||||||||| |||||||||||||||||||    
T  49861243 ctaggaccggtgtctgacacctatataacactca 49861210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 102 - 158
Target Start/End: Original strand, 17715718 - 17715774
Alignment:
Q  102 cggtgtccgacacctatataacactcatacgagccgtgtcagacaactcatacaaat 158  Q
    ||||||| |||||||||||||||||||||| |||  |||  ||||||||| ||||||    
T  17715718 cggtgtctgacacctatataacactcatacaagcattgttggacaactcaaacaaat 17715774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 102 - 158
Target Start/End: Original strand, 19016947 - 19017003
Alignment:
Q  102 cggtgtccgacacctatataacactcatacgagccgtgtcagacaactcatacaaat 158  Q
    ||||||| |||||||||||||||||||||| |||  |||  ||||||||| ||||||    
T  19016947 cggtgtctgacacctatataacactcatacaagcattgttggacaactcaaacaaat 19017003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 195 - 239
Target Start/End: Complemental strand, 27063933 - 27063889
Alignment:
Q  195 cgtagatacaagagttacatatgttttgaaaaatgttgatcaatt 239  Q
    |||||||| ||||||||||||| | |||| |||||||||||||||    
T  27063933 cgtagatataagagttacatatatgttgagaaatgttgatcaatt 27063889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 193 - 241
Target Start/End: Original strand, 27109302 - 27109350
Alignment:
Q  193 accgtagatacaagagttacatatgttttgaaaaatgttgatcaattag 241  Q
    |||||| ||||||| |||||||||||||||  | |||||||||||||||    
T  27109302 accgtaaatacaagggttacatatgttttgtgatatgttgatcaattag 27109350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 193 - 225
Target Start/End: Original strand, 27109700 - 27109732
Alignment:
Q  193 accgtagatacaagagttacatatgttttgaaa 225  Q
    |||||| ||||||||||||||||||||||||||    
T  27109700 accgtaaatacaagagttacatatgttttgaaa 27109732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 91; Significance: 4e-44; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 5 - 249
Target Start/End: Complemental strand, 40838286 - 40838040
Alignment:
Q  5 tgtccaacacttctatgacacttgtctgatacgtgttggataactaaaatcggtgtcctaaataaaattgttttct--ttgattcgacatttctaggacc 102  Q
    ||||| |||||  ||||||| ||||| || | |||||||| ||| |||||| |||||||||||||||||||||| |  || |||||||| |  | |||||    
T  40838286 tgtccgacactcgtatgacatttgtccgacatgtgttggaaaaccaaaatcagtgtcctaaataaaattgttttttagttaattcgacactctttggacc 40838187  T
Q  103 ggtgtccgacacctatataacactcatacgagccgtgtcagacaactcatacaaatatctaaaatannnnnnnctctcttactttcatgtaccgtagata 202  Q
    ||||||||||| ||||||||||||||||| || |||||| ||||||||| |||||| ||||||| |         ||||| ||| ||  |||||||||||    
T  40838186 ggtgtccgacatctatataacactcatacaagtcgtgtcggacaactcagacaaatgtctaaaacattttttttcctcttgcttccagataccgtagata 40838087  T
Q  203 caagagttacatatgttttgaaaaatgttgatcaattagaggtaata 249  Q
    ||||||||||||||||||||| ||||||||||||||||| |||||||    
T  40838086 caagagttacatatgttttgagaaatgttgatcaattaggggtaata 40838040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 103 - 163
Target Start/End: Original strand, 38989134 - 38989195
Alignment:
Q  103 ggtgtccgacacctatataacactcatacgagccgtgtcagac-aactcatacaaatatcta 163  Q
    ||||| ||||| ||||||||||||||||||||||||||| ||| |||||| |||||||||||    
T  38989134 ggtgttcgacaactatataacactcatacgagccgtgtcggacaaactcagacaaatatcta 38989195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 5 - 107
Target Start/End: Original strand, 32676424 - 32676528
Alignment:
Q  5 tgtccaacacttctatgacacttgtctgatacgtgttggataactaaaatcggtgtcctaaataaaattg--ttttctttgattcgacatttctaggacc 102  Q
    ||||| ||||| |||||||||||||  || |||||||||| | |||  | || |||||||||||||||||  ||||||||  ||||||| | ||||||||    
T  32676424 tgtccgacactcctatgacacttgtacgacacgtgttggacagctatgaccgatgtcctaaataaaattgttttttctttacttcgacactcctaggacc 32676523  T
Q  103 ggtgt 107  Q
    |||||    
T  32676524 ggtgt 32676528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 200 - 241
Target Start/End: Original strand, 32676610 - 32676651
Alignment:
Q  200 atacaagagttacatatgttttgaaaaatgttgatcaattag 241  Q
    |||||||||||||||||||||||| |||||||| ||||||||    
T  32676610 atacaagagttacatatgttttgagaaatgttgttcaattag 32676651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 84; Significance: 5e-40; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 24 - 247
Target Start/End: Complemental strand, 10678658 - 10678433
Alignment:
Q  24 acttgtctgatacgtgttggataactaaaatcggtgtcctaaataaaattgttttctt---tgattcgacatttctaggaccggtgtccgacacctatat 120  Q
    ||||||| || |||||||||| || ||||||||||||||| |||||||||||||| ||   | |||| ||| | ||||||| ||||||||||||||||||    
T  10678658 acttgtccgacacgtgttggaaaattaaaatcggtgtcctgaataaaattgtttttttatttaattcaacactcctaggactggtgtccgacacctatat 10678559  T
Q  121 aacactcatacgagccgtgtcagacaactcatacaaatatctaaaatannnnnnnctctcttactttcatgtaccgtagatacaagagttacatatgttt 220  Q
    ||||||||||||| ||||||| ||||||||| |||||||| | ||| |        |||||| ||| ||  ||||||||||||||||||||| |||||||    
T  10678558 aacactcatacgaaccgtgtctgacaactcagacaaatat-ttaaacatttctttttctcttgcttccacataccgtagatacaagagttacgtatgttt 10678460  T
Q  221 tgaaaaatgttgatcaattagaggtaa 247  Q
    ||| |||| |||||||||||| |||||    
T  10678459 tgagaaatattgatcaattaggggtaa 10678433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 41 - 241
Target Start/End: Original strand, 37338578 - 37338779
Alignment:
Q  41 tggataactaaaatcggtgtcctaaataaaattgtttt--ctttgattcgacatttctaggaccggtgtccgacacctatataacactcatacgagccgt 138  Q
    |||||||||||| |||||||| ||||||||||||||||  |||| |||| ||| | ||||||| |  ||| |||| |||||||| ||||||||||| |||    
T  37338578 tggataactaaattcggtgtcttaaataaaattgttttttctttaattcaacactcctaggactgacgtctgacatctatataatactcatacgagtcgt 37338677  T
Q  139 gtcagacaactcatacaaatatctaaaatannnnnnnctctcttactttcatgtaccgtagatacaagagttacatatgttttgaaaaatgttgatcaat 238  Q
    | ||||||||||| |||||||||| ||| |       ||||||| ||| ||  |||||||||||||||||||||||||| ||||| ||||||||||||||    
T  37338678 gacagacaactcagacaaatatctgaaaca-ttttttctctcttgcttccacataccgtagatacaagagttacatatgctttgagaaatgttgatcaat 37338776  T
Q  239 tag 241  Q
    |||    
T  37338777 tag 37338779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 102 - 166
Target Start/End: Original strand, 45215897 - 45215961
Alignment:
Q  102 cggtgtccgacacctatataacactcatacgagccgtgtcagacaactcatacaaatatctaaaa 166  Q
    ||||||||||||||||| |||||||||||||||||||||| |||||| ||  |||||||||||||    
T  45215897 cggtgtccgacacctatgtaacactcatacgagccgtgtcggacaacccagtcaaatatctaaaa 45215961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 55 - 168
Target Start/End: Complemental strand, 22291143 - 22291029
Alignment:
Q  55 cggtgtcctaaataaaa-ttgttttctttgattcgacatttctaggaccggtgtccgacacctatataacactcatacgagccgtgtcagacaactcata 153  Q
    |||||||||||||||   || ||||||||  ||||||| | ||| || |||| |||||||| |||||| ||||||||||||||||||  ||||||||  |    
T  22291143 cggtgtcctaaataattgtttttttctttacttcgacactcctacgatcggtatccgacacgtatataccactcatacgagccgtgtaggacaactcgca 22291044  T
Q  154 caaatatctaaaata 168  Q
    ||| |||||||||||    
T  22291043 caattatctaaaata 22291029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 197 - 241
Target Start/End: Complemental strand, 46533044 - 46533000
Alignment:
Q  197 tagatacaagagttacatatgttttgaaaaatgttgatcaattag 241  Q
    |||||||||||| ||||||| ||||||  ||||||||||||||||    
T  46533044 tagatacaagagctacatatattttgaggaatgttgatcaattag 46533000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 78; Significance: 2e-36; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 5 - 237
Target Start/End: Original strand, 15850242 - 15850478
Alignment:
Q  5 tgtccaacacttctatgacacttgtctgatacgtgttggataactaaaatcggtgtcctaaataaaattg--ttttctttgattcgacatttctaggacc 102  Q
    ||||| ||||| |||||||||| ||  || |||| |  || |||||||||||||||||||||||||||||  |||||||| |||| ||| |  || ||||    
T  15850242 tgtccgacactcctatgacactcgtacgacacgtatcagacaactaaaatcggtgtcctaaataaaattgttttttctttaattcaacactcttaagacc 15850341  T
Q  103 ggtgtccgacacctatataacactcatacgagcc--gtgtcagacaactcatacaaatatctaaaatannnnnnnctctcttactttcatgtaccgtaga 200  Q
    |||||| ||||||||||||||||| ||| |||||  ||||| ||||||| | || ||||||| |||||       ||||||| ||| ||  | |||||||    
T  15850342 ggtgtctgacacctatataacacttataagagccgtgtgtcggacaactaagacgaatatctgaaatatttttttctctcttgcttccacattccgtaga 15850441  T
Q  201 tacaagagttacatatgttttgaaaaatgttgatcaa 237  Q
    |||||||||||||||||||||||||||||||||||||    
T  15850442 tacaagagttacatatgttttgaaaaatgttgatcaa 15850478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 27 - 241
Target Start/End: Original strand, 18602871 - 18603086
Alignment:
Q  27 tgtctgatacgtgttggataactaaaatcggtgtcctaaataaaattgtttt---ctttgattcgacatttctaggaccggtgtccgacacctatataac 123  Q
    ||||||| |||||| ||| |||||||||||||||||||||||||||||||||   ||||||||||||| | ||| ||||||||||||||||||||| |||    
T  18602871 tgtctgacacgtgtcggacaactaaaatcggtgtcctaaataaaattgtttttttctttgattcgacactcctaagaccggtgtccgacacctataaaac 18602970  T
Q  124 actcatacgagccgtgtcagacaactcatacaaatatctaaaatannnnnnnctctcttactttcatgtaccgta-gatacaagagttacatatgttttg 222  Q
      |||| ||| | || || ||||||||| |||||||||||||  |       ||||||| ||| ||  ||| ||| ||||||||||||||||||||||||    
T  18602971 --tcat-cgaactgtttcggacaactcagacaaatatctaaagcatttttttctctcttgcttccacatacggtatgatacaagagttacatatgttttg 18603067  T
Q  223 aaaaatgttgatcaattag 241  Q
    | |||||||||||||||||    
T  18603068 agaaatgttgatcaattag 18603086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 75 - 165
Target Start/End: Original strand, 15131815 - 15131905
Alignment:
Q  75 ttttctttgattcgacatttctaggaccggtgtccgacacctatataacactcatacgagccgtgtcagacaactcatacaaatatctaaa 165  Q
    ||||||||  ||||||| | ||| |||||||||||||||||||||||||||||||| |||| |||||  |||||||| |||||||||||||    
T  15131815 ttttctttacttcgacactcctacgaccggtgtccgacacctatataacactcatatgagcagtgtcgaacaactcagacaaatatctaaa 15131905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 75 - 151
Target Start/End: Complemental strand, 31772740 - 31772664
Alignment:
Q  75 ttttctttgattcgacatttctaggaccggtgtccgacacctatataacactcatacgagccgtgtcagacaactca 151  Q
    ||||||||  ||||||| |||| |||||||||||||| |||||||||||||||||||||| |||||| |||||||||    
T  31772740 ttttctttacttcgacagttcttggaccggtgtccgatacctatataacactcatacgagacgtgtcggacaactca 31772664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 75 - 141
Target Start/End: Complemental strand, 28421354 - 28421288
Alignment:
Q  75 ttttctttgattcgacatttctaggaccggtgtccgacacctatataacactcatacgagccgtgtc 141  Q
    ||||||||  ||||||||| ||| || |||||||||||||||||||||||||||||||||| |||||    
T  28421354 ttttctttacttcgacattcctacgatcggtgtccgacacctatataacactcatacgagctgtgtc 28421288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 195 - 245
Target Start/End: Complemental strand, 1226248 - 1226198
Alignment:
Q  195 cgtagatacaagagttacatatgttttgaaaaatgttgatcaattagaggt 245  Q
    ||||||||||||||||| |||||| |||| ||||||| |||||||||||||    
T  1226248 cgtagatacaagagttaaatatgtgttgagaaatgttaatcaattagaggt 1226198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 197 - 251
Target Start/End: Complemental strand, 28421231 - 28421177
Alignment:
Q  197 tagatacaagagttacatatgttttgaaaaatgttgatcaattagaggtaataga 251  Q
    |||||||||||||||||||| |||||| |||| |||||||||||| ||| |||||    
T  28421231 tagatacaagagttacatatattttgagaaatcttgatcaattagtggttataga 28421177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 198 - 251
Target Start/End: Original strand, 15131941 - 15131994
Alignment:
Q  198 agatacaagagttacatatgttttgaaaaatgttgatcaattagaggtaataga 251  Q
    ||||||| |||||||||||||||| | |||| |||||||||||| ||| |||||    
T  15131941 agatacaggagttacatatgtttttagaaatattgatcaattaggggttataga 15131994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 101 - 141
Target Start/End: Original strand, 18393439 - 18393479
Alignment:
Q  101 ccggtgtccgacacctatataacactcatacgagccgtgtc 141  Q
    ||||||||| |||||||||||||||||||| ||| ||||||    
T  18393439 ccggtgtccaacacctatataacactcatatgagacgtgtc 18393479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 65; Significance: 1e-28; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 17 - 251
Target Start/End: Complemental strand, 17733148 - 17732910
Alignment:
Q  17 ctatgacacttgtctgatacgtgttggataactaaaatcggtgtcctaaataaaat--tgttttctttgattcgacatttctaggaccggtgtccgacac 114  Q
    |||||| ||||||  || ||||||  || ||||||||||||||||  |||||||||  | |||||||| |||||||| | |||||||||||||| |||||    
T  17733148 ctatgaaacttgttcgacacgtgtcagacaactaaaatcggtgtctcaaataaaatatttttttctttaattcgacactcctaggaccggtgtc-gacac 17733050  T
Q  115 ctatataacactcatacgagccgtgtcagacaactcatacaaatatct--aaaatannnnnnnctctcttactttcatgtaccgtagatacaagagttac 212  Q
    || ||||||| |||||||||||||||| ||||||||  |||||||| |  || ||        ||||||| ||| ||  || ||||||||||||||||||    
T  17733049 ctctataacattcatacgagccgtgtcggacaactctgacaaatatatgaaacatttttttttctctcttgcttccacatatcgtagatacaagagttac 17732950  T
Q  213 atatgttttgaaaaatgttgatcaatta-gaggtaataga 251  Q
    || |||||||| |||||||||| ||||| |||||||||||    
T  17732949 atgtgttttgagaaatgttgattaattaggaggtaataga 17732910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 75 - 241
Target Start/End: Original strand, 40289003 - 40289168
Alignment:
Q  75 ttttctttgattcgacatttctaggaccggtgtccgacacctatataacactcatacgagccgtgtcagacaactcatacaaatatctaaaatannnnnn 174  Q
    ||||||||  ||||||| | ||| || ||||||||||||||||||||||||||||||||| | |||| ||||||||| |||||||||||||| |          
T  40289003 ttttctttacttcgacactcctacgatcggtgtccgacacctatataacactcatacgagtcatgtcggacaactcaaacaaatatctaaaaca-ttttt 40289101  T
Q  175 nctctcttactttcatgtaccgtagatacaagagttacatatgttttgaaaaatgttgatcaattag 241  Q
     ||||||| ||| ||   ||| ||||||||||| ||||||||||||||| ||||||| |||||||||    
T  40289102 tctctcttgcttccacacaccatagatacaagatttacatatgttttgagaaatgttaatcaattag 40289168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 102 - 166
Target Start/End: Complemental strand, 54305905 - 54305841
Alignment:
Q  102 cggtgtccgacacctatataacactcatacgagccgtgtcagacaactcatacaaatatctaaaa 166  Q
    |||||||| ||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||    
T  54305905 cggtgtccaacacctatacaacactcatacgagccgtgtcagacaactcacacaaatatctaaaa 54305841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 5 - 151
Target Start/End: Original strand, 658252 - 658401
Alignment:
Q  5 tgtccaacacttctatgacacttgtctgatacgtgttggataactaaaatcggtgtcctaaataaaattgtttt----ctttgattcgacatttctagga 100  Q
    ||||| |||||||||||||||||||  || |||||| ||||||| || | | ||||||||||||||||||||||    ||||  ||||||| | |||| |    
T  658252 tgtccgacacttctatgacacttgtacgacacgtgtcggataaccaagaccagtgtcctaaataaaattgttttttttctttacttcgacactcctagaa 658351  T
Q  101 ccggtgtccgacacctatataacactcatacgagccgtgtcagacaactca 151  Q
    | ||||||||||||||||| |||||||| ||||||||| ||  ||||||||    
T  658352 c-ggtgtccgacacctatacaacactcaaacgagccgtttcgaacaactca 658401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 193 - 252
Target Start/End: Complemental strand, 3420046 - 3419987
Alignment:
Q  193 accgtagatacaagagttacatatgttttgaaaaatgttgatcaattagaggtaatagat 252  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||| ||| ||||||    
T  3420046 accgtagatacaagagttacatatgttttgagaaatgttgatcaattaggggttatagat 3419987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 105 - 166
Target Start/End: Original strand, 45612316 - 45612377
Alignment:
Q  105 tgtccgacacctatataacactcatacgagccgtgtcagacaactcatacaaatatctaaaa 166  Q
    |||||||||||| ||||||||||||||||| |||||| ||||||||| ||||||||||||||    
T  45612316 tgtccgacacctgtataacactcatacgagtcgtgtcggacaactcaaacaaatatctaaaa 45612377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 192 - 236
Target Start/End: Complemental strand, 31734688 - 31734644
Alignment:
Q  192 taccgtagatacaagagttacatatgttttgaaaaatgttgatca 236  Q
    |||||||||||||||||||||||||||||||| ||||||||||||    
T  31734688 taccgtagatacaagagttacatatgttttgagaaatgttgatca 31734644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 100 - 149
Target Start/End: Original strand, 18198688 - 18198737
Alignment:
Q  100 accggtgtccgacacctatataacactcatacgagccgtgtcagacaact 149  Q
    ||||||||||||||||||||||||||||||||||| | | ||||||||||    
T  18198688 accggtgtccgacacctatataacactcatacgagacatatcagacaact 18198737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 75 - 147
Target Start/End: Complemental strand, 55680993 - 55680921
Alignment:
Q  75 ttttctttgattcgacatttctaggaccggtgtccgacacctatataacactcatacgagccgtgtcagacaa 147  Q
    ||||||||  ||||||| | ||| || ||||||||||||||||| |||||||||||||||| |||||| ||||    
T  55680993 ttttctttacttcgacactcctacgatcggtgtccgacacctatgtaacactcatacgagctgtgtcaaacaa 55680921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 193 - 245
Target Start/End: Original strand, 658446 - 658498
Alignment:
Q  193 accgtagatacaagagttacatatgttttgaaaaatgttgatcaattagaggt 245  Q
    |||||||| |||||||||||||||||  ||||||||||||| |||||| ||||    
T  658446 accgtagaaacaagagttacatatgtgctgaaaaatgttgaacaattaaaggt 658498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 75 - 166
Target Start/End: Complemental strand, 29987982 - 29987892
Alignment:
Q  75 ttttctttgattcgacatttctaggaccggtgtccgacacctatataacactcatacgagccgtgtcagacaactcatacaaatatctaaaa 166  Q
    ||||||||  ||||||| | ||| || ||||||| ||| ||| |||||||||||||||||  ||||  ||||||||| ||||||||||||||    
T  29987982 ttttctttacttcgacactcctacgatcggtgtctgac-cctgtataacactcatacgagatgtgttggacaactcaaacaaatatctaaaa 29987892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 100 - 149
Target Start/End: Complemental strand, 44507962 - 44507913
Alignment:
Q  100 accggtgtccgacacctatataacactcatacgagccgtgtcagacaact 149  Q
    |||| |||| ||||| ||||||||||||||||||| |||||| |||||||    
T  44507962 accgatgtctgacacatatataacactcatacgagacgtgtcggacaact 44507913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 64; Significance: 5e-28; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 85 - 244
Target Start/End: Complemental strand, 57300 - 57140
Alignment:
Q  85 ttcgacatttctaggaccggtgtccgacacctatataacactcatacgagccgtgtcagacaactcatacaaatatctaaaata-nnnnnnnctctctta 183  Q
    ||||||||| |||||| || |||| ||||||||| |||||||||||||||||||||| ||||||| | | ||||||||||| ||        |||||||     
T  57300 ttcgacattcctaggatcgatgtctgacacctatgtaacactcatacgagccgtgtcggacaactaagataaatatctaaattattatttttctctcttg 57201  T
Q  184 ctttcatgtaccgtagatacaagagttacatatgttttgaaaaatgttgatcaattagagg 244  Q
    ||| ||  ||||||||||||||||||||||||||||| || ||||||||||||| ||||||    
T  57200 cttccacataccgtagatacaagagttacatatgtttggagaaatgttgatcaactagagg 57140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 75 - 241
Target Start/End: Complemental strand, 12844217 - 12844049
Alignment:
Q  75 ttttctttgattcgacatttctaggaccggtgtccgacacctatataacactcatacgagccgtgtcagacaactcatacaaatatctaaaata--nnnn 172  Q
    ||||||||  ||||||| | ||| || || |||| ||||| |||||||||||||||||||| ||||||||||||||| ||| |||||||||| |          
T  12844217 ttttctttacttcgacactcctaagatcgatgtctgacacttatataacactcatacgagctgtgtcagacaactcacacagatatctaaaacaatattt 12844118  T
Q  173 nnnctctcttactttcatgtaccgtagatacaagagttacatatgttttgaaaaatgttgatcaattag 241  Q
       ||||||| ||| || | ||| ||||||||||||||||||||||||||| |||||||||||||||||    
T  12844117 tttctctcttgcttccacgcaccatagatacaagagttacatatgttttgagaaatgttgatcaattag 12844049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 102 - 251
Target Start/End: Original strand, 14494315 - 14494465
Alignment:
Q  102 cggtgtccgacacctatataacactcatacgagccgtgtcagacaactcatacaaatatc-taaaatannnnnnnctctcttactttcatgtaccgtaga 200  Q
    ||||||||||||||||||||||||| |||||||||||||| ||||||||| ||||||||| ||||  |       |||| ||  || ||   ||| ||||    
T  14494315 cggtgtccgacacctatataacactaatacgagccgtgtcggacaactcacacaaatatcttaaacaattgttttctctattgtttccacacaccataga 14494414  T
Q  201 tacaagagttacatatgttttgaaaaatgttgatcaattagaggtaataga 251  Q
    ||||||| ||||||||||||||| ||||||||||||||||| ||| |||||    
T  14494415 tacaagaattacatatgttttgagaaatgttgatcaattaggggttataga 14494465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 110 - 241
Target Start/End: Complemental strand, 17540295 - 17540163
Alignment:
Q  110 gacacctatataacactcatacgagccgtgtcagacaactcatacaaatatctaaaatannnnnnn-ctctcttactttcatgtaccgtagatacaagag 208  Q
    ||||||||||||||||||||| || ||||||| ||||||||| |||||||||||||| |        ||||||| ||| |    ||| ||||||||||||    
T  17540295 gacacctatataacactcatatgaaccgtgtcggacaactcagacaaatatctaaaacaatttttttctctcttgcttccgcacaccatagatacaagag 17540196  T
Q  209 ttacatatgttttgaaaaatgttgatcaattag 241  Q
    ||||||||||||||| |||||||||||||||||    
T  17540195 ttacatatgttttgagaaatgttgatcaattag 17540163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 102 - 166
Target Start/End: Complemental strand, 19294615 - 19294551
Alignment:
Q  102 cggtgtccgacacctatataacactcatacgagccgtgtcagacaactcatacaaatatctaaaa 166  Q
    ||||||||||||||| |||||||||||||||||||||||| ||||| ||| ||||||||||||||    
T  19294615 cggtgtccgacacctgtataacactcatacgagccgtgtcggacaagtcacacaaatatctaaaa 19294551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 55 - 147
Target Start/End: Original strand, 34011035 - 34011128
Alignment:
Q  55 cggtgtcctaaataaaa-ttgttttctttgattcgacatttctaggaccggtgtccgacacctatataacactcatacgagccgtgtcagacaa 147  Q
    |||||||||||||||   || ||||||||  ||||||| | ||| ||  |||||||||||||||||||||||||||||||||||||||||||||    
T  34011035 cggtgtcctaaataattgtttttttctttacttcgacactcctacgattggtgtccgacacctatataacactcatacgagccgtgtcagacaa 34011128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 55 - 147
Target Start/End: Complemental strand, 34013815 - 34013722
Alignment:
Q  55 cggtgtcctaaataaaa-ttgttttctttgattcgacatttctaggaccggtgtccgacacctatataacactcatacgagccgtgtcagacaa 147  Q
    |||||||||||||||   || ||||||||  ||||||| | ||| ||  |||||||||||||||||||||||||||||||||||||||||||||    
T  34013815 cggtgtcctaaataattgtttttttctttacttcgacactcctacgattggtgtccgacacctatataacactcatacgagccgtgtcagacaa 34013722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 104 - 241
Target Start/End: Complemental strand, 34709238 - 34709098
Alignment:
Q  104 gtgtccgacacctatataacactcata--cgagccgtgtcagacaactcatacaaatatctaaaa-tannnnnnnctctcttactttcatgtaccgtaga 200  Q
    |||||||||||||||||||||||||||  ||||  ||||| || |||| | ||||||||||| || ||       ||||||| ||||||    || ||||    
T  34709238 gtgtccgacacctatataacactcatatacgagttgtgtcggaaaacttacacaaatatctacaactacttttttctctcttgctttcacacgccataga 34709139  T
Q  201 tacaagagttacatatgttttgaaaaatgttgatcaattag 241  Q
    || |||||||| |||| ||||||||||||||||||||||||    
T  34709138 tataagagttatatatattttgaaaaatgttgatcaattag 34709098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 5 - 140
Target Start/End: Original strand, 1255438 - 1255575
Alignment:
Q  5 tgtccaacacttctatgacacttgtctgatacgtgttggataactaaaatcggtgtcctaaataaaattgtttt--ctttgattcgacatttctaggacc 102  Q
    |||||||||||  | ||||||| || ||| ||||||  || |||||||||||| ||| |||||||| || ||||  |||| |||||||| | |||| ||     
T  1255438 tgtccaacactcatgtgacactcgtatgacacgtgtcagacaactaaaatcggcgtcttaaataaagttattttttctttaattcgacactcctagaact 1255537  T
Q  103 ggtgtccgacacctatataacactcatacgagccgtgt 140  Q
     || || |||||||||||||||| ||||||||| ||||    
T  1255538 agtatctgacacctatataacacgcatacgagctgtgt 1255575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 105 - 158
Target Start/End: Original strand, 14998569 - 14998622
Alignment:
Q  105 tgtccgacacctatataacactcatacgagccgtgtcagacaactcatacaaat 158  Q
    |||| |||||||||| ||||||||||||||  ||||||||||||| | ||||||    
T  14998569 tgtctgacacctatacaacactcatacgaggggtgtcagacaacttagacaaat 14998622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 197 - 241
Target Start/End: Original strand, 1255633 - 1255677
Alignment:
Q  197 tagatacaagagttacatatgttttgaaaaatgttgatcaattag 241  Q
    |||||||||||| |||||| |||||||  ||||||||||||||||    
T  1255633 tagatacaagagctacataggttttgaggaatgttgatcaattag 1255677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 57; Significance: 7e-24; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 5 - 240
Target Start/End: Original strand, 48632363 - 48632597
Alignment:
Q  5 tgtccaacacttctatgacacttgtctgatacgtgttggataactaaaatcggtgtcctaaataaaattg---ttttctttgattcgacatttctaggac 101  Q
    ||||| ||||| | |||||||| || ||| ||| || ||| |||||| | ||||||||||||||||||||   ||||||||| ||||||| | ||| |||    
T  48632363 tgtccgacactcccatgacactcgtatgacacgcgtcggacaactaagaccggtgtcctaaataaaattgtttttttctttgcttcgacactccta-gac 48632461  T
Q  102 cggtgtccgacacctatataacactcatacgagccgtgtcagacaactcatacaaatatctaaaatannnnnnnctctcttactttcatgtaccgtagat 201  Q
    ||||||||||||||  ||||||||||| ||||||| |||||||||||||| |||||| ||| ||| |        ||||||  ||  |   |||||||||    
T  48632462 cggtgtccgacacc--tataacactcacacgagccatgtcagacaactcaaacaaatgtctgaaacattttttt-tctcttggttctacacaccgtagat 48632558  T
Q  202 acaagagttacatatgttttgaaaaatgttgatcaatta 240  Q
    ||||||||| ||||||| |||| ||||||||||||||||    
T  48632559 acaagagttgcatatgtgttgagaaatgttgatcaatta 48632597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 78 - 163
Target Start/End: Complemental strand, 23432180 - 23432095
Alignment:
Q  78 tctttgattcgacatttctaggaccggtgtccgacacctatataacactcatacgagccgtgtcagacaactcatacaaatatcta 163  Q
    ||||| ||||| || | |||||||||||||||||||| |||||||||||||||||||||||||| ||||||||| | |||||||||    
T  23432180 tctttaattcggcactcctaggaccggtgtccgacacttatataacactcatacgagccgtgtcggacaactcagataaatatcta 23432095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 46 - 251
Target Start/End: Complemental strand, 18488551 - 18488344
Alignment:
Q  46 aactaaaatcggtgtcctaaataaaat-tgttttctttgattcgacatttctaggaccggtgtccgacacctatataacactcatacgagccgtgtcaga 144  Q
    |||||| ||||||||   ||||||||| | |||||||| |||||||| | |||||||||||||| ||||||||||||||| ||||||||||| |||| ||    
T  18488551 aactaacatcggtgtatcaaataaaatattttttctttaattcgacactcctaggaccggtgtc-gacacctatataacattcatacgagccatgtcgga 18488453  T
Q  145 caactcatacaaatatctaaaata-nnnnnnnctctcttactttcatgtaccgtagatacaagagttacatatgttttgaaaaatgttgatcaa-ttaga 242  Q
    ||||||  |||||||| | ||| |        ||||||| ||| ||  || ||||||| |||||||||||| |||||||| |||||||||| || || ||    
T  18488452 caactctgacaaatatatgaaacattttttttctctcttgcttccacatatcgtagatccaagagttacatgtgttttgagaaatgttgattaatttgga 18488353  T
Q  243 ggtaataga 251  Q
    |||||||||    
T  18488352 ggtaataga 18488344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 85 - 239
Target Start/End: Complemental strand, 32741149 - 32740995
Alignment:
Q  85 ttcgacatttctaggaccggtgtccgacacctatataacactcatacgagccgtgtcagacaactcatacaaatatctaaaa-tannnnnnnctctctta 183  Q
    ||||||| | ||| || ||||||||||||| ||||||||||| || |||||||||||| ||||||||  |||||||||||||  |       |||||||     
T  32741149 ttcgacactcctacgatcggtgtccgacac-tatataacacttatgcgagccgtgtcaaacaactcaggcaaatatctaaaacaatttttttctctcttg 32741051  T
Q  184 ctttcatgtaccgtagatacaagagttacatatgttttgaaaaatgttgatcaatt 239  Q
    ||| ||   ||| ||||||||||||||||||||||||||  |||||||||||||||    
T  32741050 cttccacacaccatagatacaagagttacatatgttttgtgaaatgttgatcaatt 32740995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 205 - 241
Target Start/End: Complemental strand, 126435 - 126399
Alignment:
Q  205 agagttacatatgttttgaaaaatgttgatcaattag 241  Q
    ||||||||||||||||||| |||||||||||||||||    
T  126435 agagttacatatgttttgagaaatgttgatcaattag 126399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 195 - 241
Target Start/End: Original strand, 7021538 - 7021584
Alignment:
Q  195 cgtagatacaagagttacatatgttttgaaaaatgttgatcaattag 241  Q
    |||||||| ||||||||||||||| |||| |||||||||| ||||||    
T  7021538 cgtagatataagagttacatatgtgttgagaaatgttgataaattag 7021584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 102 - 147
Target Start/End: Complemental strand, 3387928 - 3387883
Alignment:
Q  102 cggtgtccgacacctatataacactcatacgagccgtgtcagacaa 147  Q
    |||||||| |||||||||||||||||||| ||| |||||| |||||    
T  3387928 cggtgtccaacacctatataacactcatatgagacgtgtccgacaa 3387883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 110 - 162
Target Start/End: Complemental strand, 126508 - 126456
Alignment:
Q  110 gacacctatataacactcatacgagccgtgtcagacaactcatacaaatatct 162  Q
    |||||| ||||||||||||||||||||||||  |||| || | ||||||||||    
T  126508 gacacccatataacactcatacgagccgtgttggacagcttagacaaatatct 126456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 111 - 151
Target Start/End: Complemental strand, 3955218 - 3955178
Alignment:
Q  111 acacctatataacactcatacgagccgtgtcagacaactca 151  Q
    |||| ||||||||||||||||||| ||||||| ||||||||    
T  3955218 acacttatataacactcatacgaggcgtgtcaaacaactca 3955178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 56; Significance: 3e-23; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 102 - 251
Target Start/End: Complemental strand, 9929938 - 9929785
Alignment:
Q  102 cggtgtccgacacctatataacactcatacgagccgtgtcagacaactcatacaaatatctaaaata----nnnnnnnctctcttactttcatgtaccgt 197  Q
    |||||||||||||||||||||||||||||| |||||||||| |||||||  ||||||||||||||||           || |||| ||| ||   ||| |    
T  9929938 cggtgtccgacacctatataacactcataccagccgtgtcaaacaactctgacaaatatctaaaataagtttttttttctatcttgcttccacacaccat 9929839  T
Q  198 agatacaagagttacatatgttttgaaaaatgttgatcaattagaggtaataga 251  Q
    |||||||||||||||||||||||||| ||||||||||||| ||| ||| |||||    
T  9929838 agatacaagagttacatatgttttgagaaatgttgatcaaataggggttataga 9929785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 102 - 251
Target Start/End: Original strand, 34409458 - 34409607
Alignment:
Q  102 cggtgtccgacacctatataacactcatacgagccgtgtcagacaactcatacaaatatctaaaatannnnnnnctctcttactttcatgtaccgtagat 201  Q
    |||||||||||||||||||||||||||||||||  ||||   |||||||| |||| ||||||||| |       |||||||  || |    ||| |||||    
T  34409458 cggtgtccgacacctatataacactcatacgagttgtgttgaacaactcaaacaactatctaaaacaattttctctctcttgattccgcacaccatagat 34409557  T
Q  202 acaagagttacatatgttttgaaaaatgttgatcaattagaggtaataga 251  Q
    |||||||||||||||||||||| ||||||||||||||||| ||| |||||    
T  34409558 acaagagttacatatgttttgagaaatgttgatcaattaggggttataga 34409607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 102 - 251
Target Start/End: Complemental strand, 26576349 - 26576197
Alignment:
Q  102 cggtgtccgacacctatataacactcatacgagccgtgtcagacaactcatacaaatatctaaaata---nnnnnnnctctcttactttcatgtaccgta 198  Q
    |||| ||| ||||||||||||||||||||||||||||||| ||||||||| |||||||| ||||| |          ||||||| ||| |    ||| ||    
T  26576349 cggtctccaacacctatataacactcatacgagccgtgtcggacaactcaaacaaatatttaaaacaaattttttctctctcttgcttccgcacaccata 26576250  T
Q  199 gatacaagagttacatatgttttgaaaaatgttgatcaattagaggtaataga 251  Q
    ||||||||||||||||||||||||| ||||||||||| ||||| ||| |||||    
T  26576249 gatacaagagttacatatgttttgagaaatgttgatcgattagtggttataga 26576197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 75 - 166
Target Start/End: Original strand, 32200690 - 32200781
Alignment:
Q  75 ttttctttgattcgacatttctaggaccggtgtccgacacctatataacactcatacgagccgtgtcagacaactcatacaaatatctaaaa 166  Q
    ||||||||  ||||||| | ||| || ||||| || |||||||||||||| |||||||||||||||| ||||||||| | ||||||||||||    
T  32200690 ttttctttacttcgacactcctacgatcggtgcccaacacctatataacagtcatacgagccgtgtcggacaactcagaaaaatatctaaaa 32200781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 103 - 241
Target Start/End: Complemental strand, 13039164 - 13039025
Alignment:
Q  103 ggtgtccgacacctatataacactcatacgagccgtgtcagacaactcatacaaatatctaaaatannnnnnnc-tctcttactttcatgtaccgtagat 201  Q
    |||||||||||| | ||||||||||||| |||  |||||||||| |||| |||||||||||||| |         |||||| ||| |    ||| |||||    
T  13039164 ggtgtccgacacatttataacactcatatgagttgtgtcagacagctcagacaaatatctaaaacaatttttttatctcttgcttccgcacaccatagat 13039065  T
Q  202 acaagagttacatatgttttgaaaaatgttgatcaattag 241  Q
    |||||||||||||||||| ||| |||||||||||||||||    
T  13039064 acaagagttacatatgttatgagaaatgttgatcaattag 13039025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 85 - 158
Target Start/End: Complemental strand, 41849301 - 41849228
Alignment:
Q  85 ttcgacatttctaggaccggtgtccgacacctatataacactcatacgagccgtgtcagacaactcatacaaat 158  Q
    ||||||| | || |||| |||||||||||||||||||||||| ||| ||| |||||| ||||||||| ||||||    
T  41849301 ttcgacactccttggactggtgtccgacacctatataacacttatatgaggcgtgtcggacaactcaaacaaat 41849228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 99 - 163
Target Start/End: Complemental strand, 17651540 - 17651476
Alignment:
Q  99 gaccggtgtccgacacctatataacactcatacgagccgtgtcagacaactcatacaaatatcta 163  Q
    |||||||||||||||| ||||||||||| ||| ||| |||||| ||||||| | |||||||||||    
T  17651540 gaccggtgtccgacacttatataacacttatatgaggcgtgtcggacaacttagacaaatatcta 17651476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 197 - 241
Target Start/End: Complemental strand, 27004228 - 27004184
Alignment:
Q  197 tagatacaagagttacatatgttttgaaaaatgttgatcaattag 241  Q
    ||||||||||||||  |||||||||||||||||||||||||||||    
T  27004228 tagatacaagagttgtatatgttttgaaaaatgttgatcaattag 27004184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 105 - 158
Target Start/End: Original strand, 4747960 - 4748013
Alignment:
Q  105 tgtccgacacctatataacactcatacgagccgtgtcagacaactcatacaaat 158  Q
    |||||||||||||||||||||||||||||||| | || ||||||| | ||||||    
T  4747960 tgtccgacacctatataacactcatacgagccatctcggacaactgagacaaat 4748013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 199 - 240
Target Start/End: Original strand, 32200816 - 32200857
Alignment:
Q  199 gatacaagagttacatatgttttgaaaaatgttgatcaatta 240  Q
    ||||||||||||||||||||||||| ||||| ||||||||||    
T  32200816 gatacaagagttacatatgttttgagaaatgctgatcaatta 32200857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 99 - 162
Target Start/End: Original strand, 18724618 - 18724681
Alignment:
Q  99 gaccggtgtccgacacctatataacactcatacgagccgtgtcagacaactcatacaaatatct 162  Q
    |||| ||||| |||||||||||| |||| | | ||| |||||||||||||||| ||||||||||    
T  18724618 gaccagtgtctgacacctatatatcacttaaaagaggcgtgtcagacaactcagacaaatatct 18724681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 204 - 241
Target Start/End: Original strand, 44649945 - 44649982
Alignment:
Q  204 aagagttacatatgttttgaaaaatgttgatcaattag 241  Q
    |||||||| |||||| ||||||||||||||||||||||    
T  44649945 aagagttatatatgtgttgaaaaatgttgatcaattag 44649982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 102 - 162
Target Start/End: Original strand, 15989943 - 15990003
Alignment:
Q  102 cggtgtccgacacctatataacactcatacgagccgtgtcagacaactcatacaaatatct 162  Q
    ||||||| ||||| ||||||||| |||||||||||||||   |||||||| ||| ||||||    
T  15989943 cggtgtctgacacttatataacagtcatacgagccgtgttgaacaactcagacatatatct 15990003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 195 - 239
Target Start/End: Original strand, 15990038 - 15990082
Alignment:
Q  195 cgtagatacaagagttacatatgttttgaaaaatgttgatcaatt 239  Q
    |||||||| ||||||||||||||| |||| ||||||||| |||||    
T  15990038 cgtagatataagagttacatatgtgttgagaaatgttgaccaatt 15990082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 195 - 244
Target Start/End: Original strand, 70040 - 70089
Alignment:
Q  195 cgtagatacaagagttacatatgttttgaaaaatgttgatcaattagagg 244  Q
    ||||||||||||| |||||||||| |||| ||||||||||||||||||||    
T  70040 cgtagatacaagaattacatatgtgttgagaaatgttgatcaattagagg 70089  T

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Target: scaffold0002 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 100 - 149
Target Start/End: Complemental strand, 289109 - 289060
Alignment:
Q  100 accggtgtccgacacctatataacactcatacgagccgtgtcagacaact 149  Q
    ||||||||||||||||||||||||||||||||||| | | ||||||||||    
T  289109 accggtgtccgacacctatataacactcatacgagacatatcagacaact 289060  T

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