View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8619_low_1 (Length: 448)
Name: NF8619_low_1
Description: NF8619
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8619_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 387; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 10 - 423
Target Start/End: Complemental strand, 41516027 - 41515616
Alignment:
| Q |
10 |
ggacatcagacatcaacaaatatataaaaatatcttatacaagcacaagttactcaaaatgtaacagaaacacattgcatgtatgggccgtccctcgatg |
109 |
Q |
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| T |
41516027 |
ggacatccgacatcaacaaatatataaaaatatcttatacaagcacaagttactcaa--tgtaacagaaacacattgcatgtatgggccgtccttggatg |
41515930 |
T |
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| Q |
110 |
actacctgaggctgacgataaatgtactcctcactaatacgcattgcagtgcaacctagaccccatctgataatatccattgatggaactactcgccatc |
209 |
Q |
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| T |
41515929 |
aatacctgaggctgacgataaatgtactcctcactaatacgcattgcagtgcaacctagaccccatctgataatatccattgatggaactactcgccatc |
41515830 |
T |
|
| Q |
210 |
ttggcccacaaaggaatgggtgccttagagcatccaaacaactgtagaacatttcacatggttaacaccagtaatttttcaatctttggtaaatcaaact |
309 |
Q |
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| T |
41515829 |
ttggcccacaaaggaatgggtgccttagagcatccaaacaactgtagaacatttcacatggttaacaccagtaatttttcaatctttggtaaatcaaact |
41515730 |
T |
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| Q |
310 |
aatatatctaatcaaatgctattcatggttcacaattgtcagaaactagctacgtgttgtcaaaagatcaagcctcctgaaagaccaaagaaacttgaac |
409 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41515729 |
aatatatctaatcaaatgctattcatggttcacaattgtcagaaactagctacgtgttgtcaaaagatcaagcctcctgaaagaccaaagaaacttgaac |
41515630 |
T |
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| Q |
410 |
acttctctttatga |
423 |
Q |
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| T |
41515629 |
acttctctttatga |
41515616 |
T |
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