View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8619_low_7 (Length: 242)

Name: NF8619_low_7
Description: NF8619
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8619_low_7
NF8619_low_7
[»] chr3 (9 HSPs)
chr3 (19-160)||(10499648-10499789)
chr3 (20-99)||(9998787-9998865)
chr3 (20-99)||(10108553-10108631)
chr3 (20-99)||(10229792-10229870)
chr3 (21-94)||(10218539-10218611)
chr3 (20-99)||(10233387-10233465)
chr3 (19-59)||(10218873-10218913)
chr3 (19-59)||(10227875-10227915)
chr3 (19-59)||(10255782-10255822)
[»] chr5 (7 HSPs)
chr5 (20-99)||(26825746-26825824)
chr5 (20-94)||(26798010-26798083)
chr5 (19-59)||(26798344-26798384)
chr5 (19-59)||(26801252-26801292)
chr5 (19-59)||(26808802-26808842)
chr5 (19-59)||(26816192-26816232)
chr5 (19-59)||(26823829-26823869)
[»] chr8 (1 HSPs)
chr8 (28-68)||(11484131-11484171)


Alignment Details
Target: chr3 (Bit Score: 126; Significance: 4e-65; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 19 - 160
Target Start/End: Complemental strand, 10499789 - 10499648
Alignment:
Q  19 tatggatccacatctgactaaataataaatatacaaagaaaagtttcacacgtaaaaatgcaattggcatctttgaagtttcaactatagattagataat 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |    
T  10499789 tatggatccacatctgactaaataataaatatacaaagaaaagtttcacacgtaaaaatgcaattgccatctttgaagtttcaactatagattagatagt 10499690  T
Q  119 caattatggataaaaatggttagaaccttcgacgttatatgg 160  Q
    ||||||||||| ||||||||||||||||||||||| ||||||    
T  10499689 caattatggatgaaaatggttagaaccttcgacgtgatatgg 10499648  T

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Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 20 - 99
Target Start/End: Complemental strand, 9998865 - 9998787
Alignment:
Q  20 atggatccacatctgactaaataataaatatacaaagaaaagtttcacacgtaaaaatgcaattggcatctttgaagttt 99  Q
    ||||| ||||||| ||| |||||||| |||||||||||| |||| ||||| | |||| ||||||||||||||||||||||    
T  9998865 atggacccacatcagacaaaataatagatatacaaagaatagttgcacactttaaaa-gcaattggcatctttgaagttt 9998787  T

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Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 20 - 99
Target Start/End: Complemental strand, 10108631 - 10108553
Alignment:
Q  20 atggatccacatctgactaaataataaatatacaaagaaaagtttcacacgtaaaaatgcaattggcatctttgaagttt 99  Q
    ||||| ||||||| ||| |||||||| |||||||||||| |||| ||||| | |||| ||||||||||||||||||||||    
T  10108631 atggacccacatcagacaaaataatagatatacaaagaatagttgcacactttaaaa-gcaattggcatctttgaagttt 10108553  T

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Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 20 - 99
Target Start/End: Complemental strand, 10229870 - 10229792
Alignment:
Q  20 atggatccacatctgactaaataataaatatacaaagaaaagtttcacacgtaaaaatgcaattggcatctttgaagttt 99  Q
    ||||| ||||||| ||| |||||||| |||||||||||| |||| ||||| | |||| ||||||||||||||||||||||    
T  10229870 atggacccacatcagacaaaataatagatatacaaagaatagttgcacactttaaaa-gcaattggcatctttgaagttt 10229792  T

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Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 21 - 94
Target Start/End: Complemental strand, 10218611 - 10218539
Alignment:
Q  21 tggatccacatctgactaaataataaatatacaaagaaaagtttcacacgtaaaaatgcaattggcatctttga 94  Q
    |||| ||||||| ||| |||||||| |||||||||||| |||| ||||| | |||| |||||||||||||||||    
T  10218611 tggacccacatcagacaaaataatagatatacaaagaatagttgcacactttaaaa-gcaattggcatctttga 10218539  T

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Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 20 - 99
Target Start/End: Complemental strand, 10233465 - 10233387
Alignment:
Q  20 atggatccacatctgactaaataataaatatacaaagaaaagtttcacacgtaaaaatgcaattggcatctttgaagttt 99  Q
    ||||| ||||||| ||  |||||||| |||||||||||| |||| ||||| | |||| ||||||||||| ||||||||||    
T  10233465 atggacccacatcagaaaaaataatagatatacaaagaatagttgcacactttaaaa-gcaattggcatttttgaagttt 10233387  T

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Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 59
Target Start/End: Complemental strand, 10218913 - 10218873
Alignment:
Q  19 tatggatccacatctgactaaataataaatatacaaagaaa 59  Q
    |||||| | ||||||||| ||||||||||||||||||||||    
T  10218913 tatggaactacatctgacaaaataataaatatacaaagaaa 10218873  T

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Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 59
Target Start/End: Complemental strand, 10227915 - 10227875
Alignment:
Q  19 tatggatccacatctgactaaataataaatatacaaagaaa 59  Q
    |||||| | ||||||||| ||||||||||||||||||||||    
T  10227915 tatggaactacatctgacaaaataataaatatacaaagaaa 10227875  T

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Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 59
Target Start/End: Complemental strand, 10255822 - 10255782
Alignment:
Q  19 tatggatccacatctgactaaataataaatatacaaagaaa 59  Q
    |||||| | ||||||||| ||||||||||||||||||||||    
T  10255822 tatggaactacatctgacaaaataataaatatacaaagaaa 10255782  T

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Target: chr5 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 20 - 99
Target Start/End: Complemental strand, 26825824 - 26825746
Alignment:
Q  20 atggatccacatctgactaaataataaatatacaaagaaaagtttcacacgtaaaaatgcaattggcatctttgaagttt 99  Q
    ||||| ||||||| ||| |||||||| |||||||||||| |||| ||||| | |||| ||||||||||||||||||||||    
T  26825824 atggacccacatcagacaaaataatagatatacaaagaatagttgcacactttaaaa-gcaattggcatctttgaagttt 26825746  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 20 - 94
Target Start/End: Complemental strand, 26798083 - 26798010
Alignment:
Q  20 atggatccacatctgactaaataataaatatacaaagaaaagtttcacacgtaaaaatgcaattggcatctttga 94  Q
    ||||| ||||||| ||| |||||||| |||||||||||| |||| ||||| | |||| |||||||||||||||||    
T  26798083 atggacccacatcagacaaaataatagatatacaaagaatagttgcacactttaaaa-gcaattggcatctttga 26798010  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 59
Target Start/End: Complemental strand, 26798384 - 26798344
Alignment:
Q  19 tatggatccacatctgactaaataataaatatacaaagaaa 59  Q
    |||||| | ||||||||| ||||||||||||||||||||||    
T  26798384 tatggaactacatctgacaaaataataaatatacaaagaaa 26798344  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 59
Target Start/End: Complemental strand, 26801292 - 26801252
Alignment:
Q  19 tatggatccacatctgactaaataataaatatacaaagaaa 59  Q
    |||||| | ||||||||| ||||||||||||||||||||||    
T  26801292 tatggaactacatctgacaaaataataaatatacaaagaaa 26801252  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 59
Target Start/End: Complemental strand, 26808842 - 26808802
Alignment:
Q  19 tatggatccacatctgactaaataataaatatacaaagaaa 59  Q
    |||||| | ||||||||| ||||||||||||||||||||||    
T  26808842 tatggaactacatctgacaaaataataaatatacaaagaaa 26808802  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 59
Target Start/End: Complemental strand, 26816232 - 26816192
Alignment:
Q  19 tatggatccacatctgactaaataataaatatacaaagaaa 59  Q
    |||||| | ||||||||| ||||||||||||||||||||||    
T  26816232 tatggaactacatctgacaaaataataaatatacaaagaaa 26816192  T

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Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 59
Target Start/End: Complemental strand, 26823869 - 26823829
Alignment:
Q  19 tatggatccacatctgactaaataataaatatacaaagaaa 59  Q
    |||||| | ||||||||| ||||||||||||||||||||||    
T  26823869 tatggaactacatctgacaaaataataaatatacaaagaaa 26823829  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 28 - 68
Target Start/End: Complemental strand, 11484171 - 11484131
Alignment:
Q  28 acatctgactaaataataaatatacaaagaaaagtttcaca 68  Q
    ||||||||| |||||||||||||||||||||||||| ||||    
T  11484171 acatctgacaaaataataaatatacaaagaaaagttgcaca 11484131  T

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