View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8620_2 (Length: 433)
Name: NF8620_2
Description: NF8620
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8620_2 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 372; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 30 - 433
Target Start/End: Complemental strand, 28321559 - 28321156
Alignment:
| Q |
30 |
gatattgtagtttccattgctttctagaagtggattactaaagaaactttttgctgactccacaaatgaagatggatcaaattctattttacaacttcat |
129 |
Q |
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| T |
28321559 |
gatattgtagtttccattgctctctagaagtggattactaaagaaactttttgctgactccacaaatgaagatggatcaaattctattttacaacttcat |
28321460 |
T |
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| Q |
130 |
gatgtacctggtggagacaaaacatttgagatcataacaaagttttgctatggtgtaaaactagaaatcacaccattaaatgtggttagtctaagatgtg |
229 |
Q |
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| T |
28321459 |
gatgtacctggtggagacaaaacatttgagatcataacaaagttttgctatggtgtaaaactagaaatcacaccattaaatgtggttagtctaagatgtg |
28321360 |
T |
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| Q |
230 |
cagcagaatatttacaaatgaatgagaattatggtgaaaggaatttaatagaagtgacnnnnnnnnttcttgatgaagttttcagcaattggtcagactc |
329 |
Q |
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| T |
28321359 |
cagcagaatatttacaaatgaatgagaattatggtgaaaggaatttaatagaagtgacaaaaaaaattcttgatgaagttttcagcaattggccagactc |
28321260 |
T |
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| Q |
330 |
aataaaagcacttcaaacatgtgaagaagttaaatcttatgcagaagatcttcacattatttcaagatgcattgattccttaaccatcaaggcatgttcc |
429 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28321259 |
aataaaagcacttcaaacatgtgaagaagttaaatcttatgcagaagatcttcacattatttcaagatgcattgattccttaaccatcaaggcatgttcc |
28321160 |
T |
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| Q |
430 |
gagg |
433 |
Q |
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| T |
28321159 |
gagg |
28321156 |
T |
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Target: chr2 (Bit Score: 116; Significance: 7e-59; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 38 - 265
Target Start/End: Original strand, 5949368 - 5949595
Alignment:
| Q |
38 |
agtttccattgctttctagaagtggattactaaagaaactttttgctgactccacaaatgaagatggatcaaattctattttacaacttcatgatgtacc |
137 |
Q |
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|||||||||| ||||||||||||||| ||||||||||||| |||| || ||||||| ||| |||||||||| | |||||| |||||||||||||| || |
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| T |
5949368 |
agtttccattactttctagaagtggactactaaagaaactaattgcagagtccacaagtgaggatggatcaagtagtattttgcaacttcatgatgttcc |
5949467 |
T |
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| Q |
138 |
tggtggagacaaaacatttgagatcataacaaagttttgctatggtgtaaaactagaaatcacaccattaaatgtggttagtctaagatgtgcagcagaa |
237 |
Q |
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|||||||| ||||||||||||| |||||||||| |||||||||||||| ||| ||||||||||| |||| ||||| ||||||||||||||||||||||| |
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| T |
5949468 |
tggtggagccaaaacatttgagctcataacaaaattttgctatggtgtgaaattagaaatcacagcattgaatgtagttagtctaagatgtgcagcagag |
5949567 |
T |
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| Q |
238 |
tatttacaaatgaatgagaattatggtg |
265 |
Q |
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| T |
5949568 |
catctccaaatgactgaaaactatggtg |
5949595 |
T |
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