View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8620_3 (Length: 432)

Name: NF8620_3
Description: NF8620
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8620_3
NF8620_3
[»] chr1 (9 HSPs)
chr1 (24-386)||(8936168-8936530)
chr1 (24-386)||(8959707-8960051)
chr1 (24-390)||(8924545-8924893)
chr1 (224-383)||(9306840-9306999)
chr1 (230-390)||(9475290-9475450)
chr1 (224-387)||(9245056-9245219)
chr1 (224-390)||(9335503-9335669)
chr1 (241-390)||(8945879-8946028)
chr1 (230-387)||(9359247-9359404)
[»] chr3 (1 HSPs)
chr3 (224-387)||(9168398-9168558)
[»] chr6 (1 HSPs)
chr6 (230-389)||(15912782-15912941)


Alignment Details
Target: chr1 (Bit Score: 311; Significance: 1e-175; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 24 - 386
Target Start/End: Original strand, 8936168 - 8936530
Alignment:
Q  24 atcatcactcacaggactgctacaattcatgtaaattacgtgctggaacatttgtaatgatgtaggatatttaagaatttccaaagtaagagcttctgca 123  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  8936168 atcatccctcacaggactgctacaattcatgtaaattacgtgctggaacatttgtaatgttgtaggatatttaagaatttccaaagtaagagcttctgca 8936267  T
Q  124 ttttcatatatagtagtatcaactattctattctggtaagtttgatatggatcaacagaattgaagatataagagctgctgaaattataattgtacaagt 223  Q
    |||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||| ||||    
T  8936268 ttttcatatatagtagtatcaactattcttctctggtaagtttgatatggatcaacagaatcgtagatataagagctgctgaaattataattgtataagt 8936367  T
Q  224 aatagtgaggaatggtggagcaatcaccctcttgaattccgggatcaactaaccgaattgtgtagttattgtagttgattgatttcacatagtatttacc 323  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8936368 aatagtgaggaatggtggagcaatcaccctcttcaattccgggatcaactaaccgaattgtgtagttattgtagttgattgatttcacatagtatttacc 8936467  T
Q  324 cgacaacaaagttaaagttgttatgttgttttcgcaggataactcatacctcggatcaccaca 386  Q
    |||||||| ||||||  |||| ||||||||||||||||||||||||||||| |||||||||||    
T  8936468 cgacaacagagttaacattgtgatgttgttttcgcaggataactcataccttggatcaccaca 8936530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 24 - 386
Target Start/End: Original strand, 8959707 - 8960051
Alignment:
Q  24 atcatcactcacaggactgctacaattcatgtaaattacgtgctggaacatttgtaatgatgtaggatatttaagaatttccaaagtaagagcttctgca 123  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||                  ||||||||||||||  || |    
T  8959707 atcatccctcacaggactgctacaattcatgtaaattacgtgctggaacatttgtaatgatg------------------ccaaagtaagagctggtgaa 8959788  T
Q  124 ttttcatatatagtagtatcaactattctattctggtaagtttgatatggatcaacagaattgaagatataagagctgctgaaattataattgtacaagt 223  Q
    | || |||| |||||||||||||||||||| |||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||    
T  8959789 tatttatatctagtagtatcaactattctactctggtaagtttgatatggatcaacagaatcgtagatataagagctgctgaaattataattgtacaagt 8959888  T
Q  224 aatagtgaggaatggtggagcaatcaccctcttgaattccgggatcaactaaccgaattgtgtagttattgtagttgattgatttcacatagtatttacc 323  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8959889 aatagtgaggaatggtggagcaatcaccctcttcaattccgggatcaactaaccgaattgtgtagttattgtagttgattgatttcacatagtatttacc 8959988  T
Q  324 cgacaacaaagttaaagttgttatgttgttttcgcaggataactcatacctcggatcaccaca 386  Q
    ||||||||||||||| ||||| ||||||||||||||||||||||| |||||||||||||||||    
T  8959989 cgacaacaaagttaaggttgtgatgttgttttcgcaggataactcgtacctcggatcaccaca 8960051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 24 - 390
Target Start/End: Original strand, 8924545 - 8924893
Alignment:
Q  24 atcatcactcacaggactgctacaattcatgtaaattacgtgctggaacatttgtaatgatgtaggatatttaagaatttccaaagtaagagcttctgca 123  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||                  ||||||||||||||  || |    
T  8924545 atcatccctcacaggactgctacaattcatgtaaattacgtgctggaacatttgtaatgatg------------------ccaaagtaagagctggtgaa 8924626  T
Q  124 ttttcatatatagtagtatcaactattctattctggtaagtttgatatggatcaacagaattgaagatataagagctgctgaaattataattgtacaagt 223  Q
    | || |||| |||||||||||||||||||  ||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||    
T  8924627 tatttatatctagtagtatcaactattctgctctggtatgtttgatatggatcaacagaatcgaagatataagagctgctgaaattataattgtataagt 8924726  T
Q  224 aatagtgaggaatggtggagcaatcaccctcttgaattccgggatcaactaaccgaattgtgtagttattgtagttgattgatttcacatagtatttacc 323  Q
    ||||| |||||| || ||||||||||||||||| |||||||||||||||||  |  |||||||||||||||||||||||||||||||||||||||||||     
T  8924727 aatagcgaggaaaggaggagcaatcaccctcttcaattccgggatcaactattctgattgtgtagttattgtagttgattgatttcacatagtatttact 8924826  T
Q  324 cgacaacaaagttaaagttgttatgttgttttcgcaggataactcatacctcggatcaccacaggtt 390  Q
    |||||| | |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  8924827 cgacaatagagttaaagttgttatgttgttttcgcaggataactcgtacctcggatcaccacaggtt 8924893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 224 - 383
Target Start/End: Complemental strand, 9306999 - 9306840
Alignment:
Q  224 aatagtgaggaatggtggagcaatcaccctcttgaattccgggatcaactaaccgaattgtgtagttattgtagttgattgatttcacatagtatttacc 323  Q
    ||||| |||| |||| |||||||||||| |||||||||||  |||||||||  |  |||| ||||||  |||||||||||||||||||||||||||||||    
T  9306999 aatagcgaggcatggaggagcaatcaccttcttgaattccaagatcaactactctcattgagtagtttctgtagttgattgatttcacatagtatttacc 9306900  T
Q  324 cgacaacaaagttaaagttgttatgttgttttcgcaggataactcatacctcggatcacc 383  Q
     || ||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||    
T  9306899 tgaaaacaaagttaacgttgtgatgttgttttcgcaggataactcatacctcggatcacc 9306840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 230 - 390
Target Start/End: Complemental strand, 9475450 - 9475290
Alignment:
Q  230 gaggaatggtggagcaatcaccctcttgaattccgggatcaactaaccgaattgtgtagttattgtagttgattgatttcacatagtatttacccgacaa 329  Q
    ||||||||| | |||||||| ||||||||||||| ||||||||||  |  ||||||||||||| |||||||||||| ||||||| ||| |||||||| |     
T  9475450 gaggaatggagaagcaatcatcctcttgaattccaggatcaactagtctgattgtgtagttatcgtagttgattgacttcacattgtagttacccgaaag 9475351  T
Q  330 caaagttaaagttgttatgttgttttcgcaggataactcatacctcggatcaccacaggtt 390  Q
    ||||||||| ||||| ||||||||| ||||||||||||| |||||||||||||||||||||    
T  9475350 caaagttaacgttgtgatgttgtttacgcaggataactcgtacctcggatcaccacaggtt 9475290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 224 - 387
Target Start/End: Complemental strand, 9245219 - 9245056
Alignment:
Q  224 aatagtgaggaatggtggagcaatcaccctcttgaattccgggatcaactaaccgaattgtgtagttattgtagttgattgatttcacatagtatttacc 323  Q
    ||||| |||||| || |||||||  |||||||| |||||||||||||||||||  |||||||||||| |||||||||||||  ||||||||||| |||||    
T  9245219 aatagcgaggaagggaggagcaactaccctcttcaattccgggatcaactaacaaaattgtgtagttgttgtagttgattgccttcacatagtacttacc 9245120  T
Q  324 cgacaacaaagttaaagttgttatgttgttttcgcaggataactcatacctcggatcaccacag 387  Q
    ||| |||| ||||||   ||| ||||||||||||||||||||||||||| ||||||||||||||    
T  9245119 cgaaaacagagttaacactgtgatgttgttttcgcaggataactcatacttcggatcaccacag 9245056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 224 - 390
Target Start/End: Original strand, 9335503 - 9335669
Alignment:
Q  224 aatagtgaggaatggtggagcaatcaccctcttgaattccgggatcaactaaccgaattgtgtagttattgtagttgattgatttcacatagtatttacc 323  Q
    ||||| ||||||||| |||| ||||||| |||| |||||| ||||||||||||||||||||||||||  |||||||||||   | |||||||||||||||    
T  9335503 aatagcgaggaatggaggagtaatcaccttcttcaattcctggatcaactaaccgaattgtgtagtttatgtagttgatttcctgcacatagtatttacc 9335602  T
Q  324 cgacaacaaagttaaagttgttatgttgttttcgcaggataactcatacctcggatcaccacaggtt 390  Q
     || |||| |||||| | ||| ||||||||||||||||||||||| ||| | |||||||||||||||    
T  9335603 tgaaaacagagttaacgctgtgatgttgttttcgcaggataactcgtactttggatcaccacaggtt 9335669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 241 - 390
Target Start/End: Original strand, 8945879 - 8946028
Alignment:
Q  241 gagcaatcaccctcttgaattccgggatcaactaaccgaattgtgtagttattgtagttgattgatttcacatagtatttacccgacaacaaagttaaag 340  Q
    ||||||||||| ||||  ||||| |||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||| || | ||   ||||      
T  8945879 gagcaatcaccttcttttattccaggatcaactaaccgaattgtgtagttattgtagttgattgattttacatggtatttaccagaaagcagctttaaca 8945978  T
Q  341 ttgttatgttgttttcgcaggataactcatacctcggatcaccacaggtt 390  Q
    |||| ||||| ||||||||||||||||| |||||||||||||| ||||||    
T  8945979 ttgtgatgtttttttcgcaggataactcgtacctcggatcaccgcaggtt 8946028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 230 - 387
Target Start/End: Original strand, 9359247 - 9359404
Alignment:
Q  230 gaggaatggtggagcaatcaccctcttgaattccgggatcaactaaccgaattgtgtagttattgtagttgattgatttcacatagtatttacccgacaa 329  Q
    ||||||||| |||||||| |||||||| |||| | |||||||||| |||||||||||| ||   ||||||||||   | ||||||||||||||| || ||    
T  9359247 gaggaatggaggagcaattaccctcttcaattactggatcaactagccgaattgtgtaatttacgtagttgatttcctgcacatagtatttacctgaaaa 9359346  T
Q  330 caaagttaaagttgttatgttgttttcgcaggataactcatacctcggatcaccacag 387  Q
    || ||||||    || ||||||||||||||||||||||| ||| ||||||||||||||    
T  9359347 cagagttaacacggtgatgttgttttcgcaggataactcgtacttcggatcaccacag 9359404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 74; Significance: 8e-34; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 224 - 387
Target Start/End: Original strand, 9168398 - 9168558
Alignment:
Q  224 aatagtgaggaatggtggagcaatcaccctcttgaattccgggatcaactaaccgaattgtgtagttattgtagttgattgatttcacatagtatttacc 323  Q
    ||||| |||||||||||   |||||||| ||||  ||||| ||||||||||  |  ||||||||||| ||||||||||||||||||||||||||||||||    
T  9168398 aatagcgaggaatggtg---caatcaccttcttctattccaggatcaactactctgattgtgtagtttttgtagttgattgatttcacatagtatttacc 9168494  T
Q  324 cgacaacaaagttaaagttgttatgttgttttcgcaggataactcatacctcggatcaccacag 387  Q
    | | |||| | |||  ||||| ||||||||||| ||||||||||| ||||||||||||||||||    
T  9168495 ccaaaacagacttagcgttgtgatgttgttttcacaggataactcgtacctcggatcaccacag 9168558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 68; Significance: 3e-30; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 230 - 389
Target Start/End: Complemental strand, 15912941 - 15912782
Alignment:
Q  230 gaggaatggtggagcaatcaccctcttgaattccgggatcaactaaccgaattgtgtagttattgtagttgattgatttcacatagtatttacccgacaa 329  Q
    ||||||||| |||||||||||||||||| |  |||| ||||||||||| |||||||||||| || |||||||||     ||||||||| ||||| || ||    
T  15912941 gaggaatggaggagcaatcaccctcttgcaacccggcatcaactaacctaattgtgtagtttttatagttgatttccaacacatagtacttacctgaaaa 15912842  T
Q  330 caaagttaaagttgttatgttgttttcgcaggataactcatacctcggatcaccacaggt 389  Q
    || | |||| ||||| ||||||||||||||||||||||| || |||||||| ||||||||    
T  15912841 cagatttaaggttgtgatgttgttttcgcaggataactcgtagctcggatccccacaggt 15912782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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