View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8620_4 (Length: 355)

Name: NF8620_4
Description: NF8620
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8620_4
NF8620_4
[»] chr3 (6 HSPs)
chr3 (1-66)||(24700446-24700511)
chr3 (266-347)||(24633994-24634075)
chr3 (197-248)||(24703817-24703868)
chr3 (189-248)||(24633949-24634008)
chr3 (98-154)||(24633888-24633943)
chr3 (211-244)||(24646595-24646628)


Alignment Details
Target: chr3 (Bit Score: 50; Significance: 1e-19; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 24700446 - 24700511
Alignment:
Q  1 tcatcctcttcccaacaaattcccgagccaacatatttgtatttctatttgttattagttttagta 66  Q
    |||||||||||||||||||| ||||||||||||||||||||| |||||||||  ||||||||||||    
T  24700446 tcatcctcttcccaacaaatccccgagccaacatatttgtatctctatttgtggttagttttagta 24700511  T

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Target: chr3; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 266 - 347
Target Start/End: Original strand, 24633994 - 24634075
Alignment:
Q  266 ctaatttcataaaaagaaaactgttaaacagcatcaatttttgttataggtgttttctattttctcactactcatctgtgct 347  Q
    |||| ||||||||||||||| ||||||| ||||||||  ||| ||| ||||||||||||||||||||||| |||| ||||||    
T  24633994 ctaacttcataaaaagaaaattgttaaatagcatcaacatttattagaggtgttttctattttctcactagtcatgtgtgct 24634075  T

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Target: chr3; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 197 - 248
Target Start/End: Original strand, 24703817 - 24703868
Alignment:
Q  197 tatgtataaagatgtatacattgattgcaaccactaactaatttcataaaaa 248  Q
    |||||| |||||||||||||||||||||||||||||||||| ||||||||||    
T  24703817 tatgtaaaaagatgtatacattgattgcaaccactaactaacttcataaaaa 24703868  T

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Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 189 - 248
Target Start/End: Original strand, 24633949 - 24634008
Alignment:
Q  189 tgacataatatgtataaagatgtatacattgattgcaaccactaactaatttcataaaaa 248  Q
    ||||| |||||| | ||||| |||||||||||||||||||||||||||| ||||||||||    
T  24633949 tgacagaatatgcaaaaagacgtatacattgattgcaaccactaactaacttcataaaaa 24634008  T

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Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 98 - 154
Target Start/End: Original strand, 24633888 - 24633943
Alignment:
Q  98 tatataagaagtgaagcaaaagtaagatagaaggaagaatcatattcaatatatcag 154  Q
    ||||||| |||||||| ||||| ||||||||| ||||||||||||||||||||||||    
T  24633888 tatataacaagtgaag-aaaagaaagatagaaagaagaatcatattcaatatatcag 24633943  T

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Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 211 - 244
Target Start/End: Original strand, 24646595 - 24646628
Alignment:
Q  211 tatacattgattgcaaccactaactaatttcata 244  Q
    ||||||||||||||||||||||||||| ||||||    
T  24646595 tatacattgattgcaaccactaactaacttcata 24646628  T

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