View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8620_6 (Length: 336)
Name: NF8620_6
Description: NF8620
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8620_6 |
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Alignment Details
Target: chr3 (Bit Score: 277; Significance: 1e-155; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 1 - 317
Target Start/End: Complemental strand, 34899713 - 34899398
Alignment:
| Q |
1 |
attataacatttgcatatgcttgcgtggtacgttacgcataaaaaccaagtggaacatgtcaactgacccactaattgaggttctcctaataactaagaa |
100 |
Q |
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| T |
34899713 |
attataacatttgcatatgcttgtgtggtac-ttacgcataaaaaccaagtggaacatgtcaactgacccactagttgaggttctcctaataactaagaa |
34899615 |
T |
|
| Q |
101 |
catttttagagacacattttcgatattcaattttctgcattcagctaccaactaattatttgtaagtcttagcagacacttcttcatagannnnnnnngt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
34899614 |
catttttagagacacattttcgatattcaattttctgcattcagctaccaactaattatttgtaagtcttagcagacacttcttcatagattttttttgt |
34899515 |
T |
|
| Q |
201 |
tgaagaagtcaaaaattatattaaacgaaaaagagatcccaataaatacaagttgagtttaagaaggatccaaatagcaccacaagaaacaattagagaa |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34899514 |
tgaagaagtcaaaaattatattaaacgaaaaagagatcccaataaatacaagttgagtttaagaaggatccaaatagcaccacaagaaacaattagagaa |
34899415 |
T |
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| Q |
301 |
gtgtcaaaacaaaaggg |
317 |
Q |
| |
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||||||||||||||||| |
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| T |
34899414 |
gtgtcaaaacaaaaggg |
34899398 |
T |
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