View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8620_high_1 (Length: 389)
Name: NF8620_high_1
Description: NF8620
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8620_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 311; Significance: 1e-175; HSPs: 9)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 11 - 373
Target Start/End: Original strand, 8936168 - 8936530
Alignment:
| Q |
11 |
atcatcactcacaggactgctacaattcatgtaaattacgtgctggaacatttgtaatgatgtaggatatttaagaatttccaaagtaagagcttctgca |
110 |
Q |
| |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
8936168 |
atcatccctcacaggactgctacaattcatgtaaattacgtgctggaacatttgtaatgttgtaggatatttaagaatttccaaagtaagagcttctgca |
8936267 |
T |
|
| Q |
111 |
ttttcatatatagtagtatcaactattctattctggtaagtttgatatggatcaacagaattgaagatataagagctgctgaaattataattgtacaagt |
210 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||| |||| |
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| T |
8936268 |
ttttcatatatagtagtatcaactattcttctctggtaagtttgatatggatcaacagaatcgtagatataagagctgctgaaattataattgtataagt |
8936367 |
T |
|
| Q |
211 |
aatagtgaggaatggtggagcaatcaccctcttgaattccgggatcaactaaccgaattgtgtagttattgtagttgattgatttcacatagtatttacc |
310 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8936368 |
aatagtgaggaatggtggagcaatcaccctcttcaattccgggatcaactaaccgaattgtgtagttattgtagttgattgatttcacatagtatttacc |
8936467 |
T |
|
| Q |
311 |
cgacaacaaagttaaagttgttatgttgttttcgcaggataactcatacctcggatcaccaca |
373 |
Q |
| |
|
|||||||| |||||| |||| ||||||||||||||||||||||||||||| ||||||||||| |
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|
| T |
8936468 |
cgacaacagagttaacattgtgatgttgttttcgcaggataactcataccttggatcaccaca |
8936530 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 11 - 373
Target Start/End: Original strand, 8959707 - 8960051
Alignment:
| Q |
11 |
atcatcactcacaggactgctacaattcatgtaaattacgtgctggaacatttgtaatgatgtaggatatttaagaatttccaaagtaagagcttctgca |
110 |
Q |
| |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| || | |
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|
| T |
8959707 |
atcatccctcacaggactgctacaattcatgtaaattacgtgctggaacatttgtaatgatg------------------ccaaagtaagagctggtgaa |
8959788 |
T |
|
| Q |
111 |
ttttcatatatagtagtatcaactattctattctggtaagtttgatatggatcaacagaattgaagatataagagctgctgaaattataattgtacaagt |
210 |
Q |
| |
|
| || |||| |||||||||||||||||||| |||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||| |
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|
| T |
8959789 |
tatttatatctagtagtatcaactattctactctggtaagtttgatatggatcaacagaatcgtagatataagagctgctgaaattataattgtacaagt |
8959888 |
T |
|
| Q |
211 |
aatagtgaggaatggtggagcaatcaccctcttgaattccgggatcaactaaccgaattgtgtagttattgtagttgattgatttcacatagtatttacc |
310 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
8959889 |
aatagtgaggaatggtggagcaatcaccctcttcaattccgggatcaactaaccgaattgtgtagttattgtagttgattgatttcacatagtatttacc |
8959988 |
T |
|
| Q |
311 |
cgacaacaaagttaaagttgttatgttgttttcgcaggataactcatacctcggatcaccaca |
373 |
Q |
| |
|
||||||||||||||| ||||| ||||||||||||||||||||||| ||||||||||||||||| |
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|
| T |
8959989 |
cgacaacaaagttaaggttgtgatgttgttttcgcaggataactcgtacctcggatcaccaca |
8960051 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 11 - 377
Target Start/End: Original strand, 8924545 - 8924893
Alignment:
| Q |
11 |
atcatcactcacaggactgctacaattcatgtaaattacgtgctggaacatttgtaatgatgtaggatatttaagaatttccaaagtaagagcttctgca |
110 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| || | |
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|
| T |
8924545 |
atcatccctcacaggactgctacaattcatgtaaattacgtgctggaacatttgtaatgatg------------------ccaaagtaagagctggtgaa |
8924626 |
T |
|
| Q |
111 |
ttttcatatatagtagtatcaactattctattctggtaagtttgatatggatcaacagaattgaagatataagagctgctgaaattataattgtacaagt |
210 |
Q |
| |
|
| || |||| ||||||||||||||||||| ||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||| |
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|
| T |
8924627 |
tatttatatctagtagtatcaactattctgctctggtatgtttgatatggatcaacagaatcgaagatataagagctgctgaaattataattgtataagt |
8924726 |
T |
|
| Q |
211 |
aatagtgaggaatggtggagcaatcaccctcttgaattccgggatcaactaaccgaattgtgtagttattgtagttgattgatttcacatagtatttacc |
310 |
Q |
| |
|
||||| |||||| || ||||||||||||||||| ||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
8924727 |
aatagcgaggaaaggaggagcaatcaccctcttcaattccgggatcaactattctgattgtgtagttattgtagttgattgatttcacatagtatttact |
8924826 |
T |
|
| Q |
311 |
cgacaacaaagttaaagttgttatgttgttttcgcaggataactcatacctcggatcaccacaggtt |
377 |
Q |
| |
|
|||||| | |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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|
| T |
8924827 |
cgacaatagagttaaagttgttatgttgttttcgcaggataactcgtacctcggatcaccacaggtt |
8924893 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 211 - 370
Target Start/End: Complemental strand, 9306999 - 9306840
Alignment:
| Q |
211 |
aatagtgaggaatggtggagcaatcaccctcttgaattccgggatcaactaaccgaattgtgtagttattgtagttgattgatttcacatagtatttacc |
310 |
Q |
| |
|
||||| |||| |||| |||||||||||| ||||||||||| ||||||||| | |||| |||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
9306999 |
aatagcgaggcatggaggagcaatcaccttcttgaattccaagatcaactactctcattgagtagtttctgtagttgattgatttcacatagtatttacc |
9306900 |
T |
|
| Q |
311 |
cgacaacaaagttaaagttgttatgttgttttcgcaggataactcatacctcggatcacc |
370 |
Q |
| |
|
|| ||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| |
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|
| T |
9306899 |
tgaaaacaaagttaacgttgtgatgttgttttcgcaggataactcatacctcggatcacc |
9306840 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 217 - 377
Target Start/End: Complemental strand, 9475450 - 9475290
Alignment:
| Q |
217 |
gaggaatggtggagcaatcaccctcttgaattccgggatcaactaaccgaattgtgtagttattgtagttgattgatttcacatagtatttacccgacaa |
316 |
Q |
| |
|
||||||||| | |||||||| ||||||||||||| |||||||||| | ||||||||||||| |||||||||||| ||||||| ||| |||||||| | |
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|
| T |
9475450 |
gaggaatggagaagcaatcatcctcttgaattccaggatcaactagtctgattgtgtagttatcgtagttgattgacttcacattgtagttacccgaaag |
9475351 |
T |
|
| Q |
317 |
caaagttaaagttgttatgttgttttcgcaggataactcatacctcggatcaccacaggtt |
377 |
Q |
| |
|
||||||||| ||||| ||||||||| ||||||||||||| ||||||||||||||||||||| |
|
|
| T |
9475350 |
caaagttaacgttgtgatgttgtttacgcaggataactcgtacctcggatcaccacaggtt |
9475290 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 211 - 374
Target Start/End: Complemental strand, 9245219 - 9245056
Alignment:
| Q |
211 |
aatagtgaggaatggtggagcaatcaccctcttgaattccgggatcaactaaccgaattgtgtagttattgtagttgattgatttcacatagtatttacc |
310 |
Q |
| |
|
||||| |||||| || ||||||| |||||||| ||||||||||||||||||| |||||||||||| ||||||||||||| ||||||||||| ||||| |
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|
| T |
9245219 |
aatagcgaggaagggaggagcaactaccctcttcaattccgggatcaactaacaaaattgtgtagttgttgtagttgattgccttcacatagtacttacc |
9245120 |
T |
|
| Q |
311 |
cgacaacaaagttaaagttgttatgttgttttcgcaggataactcatacctcggatcaccacag |
374 |
Q |
| |
|
||| |||| |||||| ||| ||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
9245119 |
cgaaaacagagttaacactgtgatgttgttttcgcaggataactcatacttcggatcaccacag |
9245056 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 211 - 377
Target Start/End: Original strand, 9335503 - 9335669
Alignment:
| Q |
211 |
aatagtgaggaatggtggagcaatcaccctcttgaattccgggatcaactaaccgaattgtgtagttattgtagttgattgatttcacatagtatttacc |
310 |
Q |
| |
|
||||| ||||||||| |||| ||||||| |||| |||||| |||||||||||||||||||||||||| ||||||||||| | ||||||||||||||| |
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|
| T |
9335503 |
aatagcgaggaatggaggagtaatcaccttcttcaattcctggatcaactaaccgaattgtgtagtttatgtagttgatttcctgcacatagtatttacc |
9335602 |
T |
|
| Q |
311 |
cgacaacaaagttaaagttgttatgttgttttcgcaggataactcatacctcggatcaccacaggtt |
377 |
Q |
| |
|
|| |||| |||||| | ||| ||||||||||||||||||||||| ||| | ||||||||||||||| |
|
|
| T |
9335603 |
tgaaaacagagttaacgctgtgatgttgttttcgcaggataactcgtactttggatcaccacaggtt |
9335669 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 228 - 377
Target Start/End: Original strand, 8945879 - 8946028
Alignment:
| Q |
228 |
gagcaatcaccctcttgaattccgggatcaactaaccgaattgtgtagttattgtagttgattgatttcacatagtatttacccgacaacaaagttaaag |
327 |
Q |
| |
|
||||||||||| |||| ||||| |||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||| || | || |||| |
|
|
| T |
8945879 |
gagcaatcaccttcttttattccaggatcaactaaccgaattgtgtagttattgtagttgattgattttacatggtatttaccagaaagcagctttaaca |
8945978 |
T |
|
| Q |
328 |
ttgttatgttgttttcgcaggataactcatacctcggatcaccacaggtt |
377 |
Q |
| |
|
|||| ||||| ||||||||||||||||| |||||||||||||| |||||| |
|
|
| T |
8945979 |
ttgtgatgtttttttcgcaggataactcgtacctcggatcaccgcaggtt |
8946028 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 217 - 374
Target Start/End: Original strand, 9359247 - 9359404
Alignment:
| Q |
217 |
gaggaatggtggagcaatcaccctcttgaattccgggatcaactaaccgaattgtgtagttattgtagttgattgatttcacatagtatttacccgacaa |
316 |
Q |
| |
|
||||||||| |||||||| |||||||| |||| | |||||||||| |||||||||||| || |||||||||| | ||||||||||||||| || || |
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|
| T |
9359247 |
gaggaatggaggagcaattaccctcttcaattactggatcaactagccgaattgtgtaatttacgtagttgatttcctgcacatagtatttacctgaaaa |
9359346 |
T |
|
| Q |
317 |
caaagttaaagttgttatgttgttttcgcaggataactcatacctcggatcaccacag |
374 |
Q |
| |
|
|| |||||| || ||||||||||||||||||||||| ||| |||||||||||||| |
|
|
| T |
9359347 |
cagagttaacacggtgatgttgttttcgcaggataactcgtacttcggatcaccacag |
9359404 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 74; Significance: 8e-34; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 211 - 374
Target Start/End: Original strand, 9168398 - 9168558
Alignment:
| Q |
211 |
aatagtgaggaatggtggagcaatcaccctcttgaattccgggatcaactaaccgaattgtgtagttattgtagttgattgatttcacatagtatttacc |
310 |
Q |
| |
|
||||| ||||||||||| |||||||| |||| ||||| |||||||||| | ||||||||||| |||||||||||||||||||||||||||||||| |
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|
| T |
9168398 |
aatagcgaggaatggtg---caatcaccttcttctattccaggatcaactactctgattgtgtagtttttgtagttgattgatttcacatagtatttacc |
9168494 |
T |
|
| Q |
311 |
cgacaacaaagttaaagttgttatgttgttttcgcaggataactcatacctcggatcaccacag |
374 |
Q |
| |
|
| | |||| | ||| ||||| ||||||||||| ||||||||||| |||||||||||||||||| |
|
|
| T |
9168495 |
ccaaaacagacttagcgttgtgatgttgttttcacaggataactcgtacctcggatcaccacag |
9168558 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 68; Significance: 3e-30; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 217 - 376
Target Start/End: Complemental strand, 15912941 - 15912782
Alignment:
| Q |
217 |
gaggaatggtggagcaatcaccctcttgaattccgggatcaactaaccgaattgtgtagttattgtagttgattgatttcacatagtatttacccgacaa |
316 |
Q |
| |
|
||||||||| |||||||||||||||||| | |||| ||||||||||| |||||||||||| || ||||||||| ||||||||| ||||| || || |
|
|
| T |
15912941 |
gaggaatggaggagcaatcaccctcttgcaacccggcatcaactaacctaattgtgtagtttttatagttgatttccaacacatagtacttacctgaaaa |
15912842 |
T |
|
| Q |
317 |
caaagttaaagttgttatgttgttttcgcaggataactcatacctcggatcaccacaggt |
376 |
Q |
| |
|
|| | |||| ||||| ||||||||||||||||||||||| || |||||||| |||||||| |
|
|
| T |
15912841 |
cagatttaaggttgtgatgttgttttcgcaggataactcgtagctcggatccccacaggt |
15912782 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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