View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8620_low_2 (Length: 269)
Name: NF8620_low_2
Description: NF8620
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8620_low_2 |
 | |
|
| [»] chr4 (1 HSPs) |
| |
|
| [»] chr1 (1 HSPs) |
| |
|
| [»] chr5 (2 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 155; Significance: 2e-82; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 52 - 269
Target Start/End: Complemental strand, 56459523 - 56459305
Alignment:
| Q |
52 |
caattgacaataaaccataaacaatacttttccttatcatatagcagagttcctaactttatatcggtgaataattgattccttatcataagcaagtttt |
151 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||| ||||||||| |||||||||||| |||||||||| |||| |
|
|
| T |
56459523 |
caattgacaataaaccataaacagtacttttccttatcatatagcagagtttctaactttctatcggtgaggaattgattccttgtcataagcaattttt |
56459424 |
T |
|
| Q |
152 |
tg-accaaattaaaatacagatctggtgagttacactattaggtgaaattagatcctcaaatgggttgaaatcgatcaagagagagatcgtgaagaacaa |
250 |
Q |
| |
|
| |||||||||||||||||||||| ||| |||||||||||||||||| |||||||| ||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
56459423 |
tttaccaaattaaaatacagatctgttgaattacactattaggtgaaactagatccttaaatgggttgaaatcaatcaagagagagatcgtgaagaacaa |
56459324 |
T |
|
| Q |
251 |
agattaaagaacacagaca |
269 |
Q |
| |
|
|||||||| |||||||||| |
|
|
| T |
56459323 |
agattaaaaaacacagaca |
56459305 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 155; Significance: 2e-82; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 52 - 269
Target Start/End: Original strand, 19402620 - 19402838
Alignment:
| Q |
52 |
caattgacaataaaccataaacaatacttttccttatcatatagcagagttcctaactttatatcggtgaataattgattccttatcataagcaagtttt |
151 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||| ||||||||| |||||||||||| |||||||||| |||| |
|
|
| T |
19402620 |
caattgacaataaaccataaacagtacttttccttatcatatagcagagtttctaactttctatcggtgaggaattgattccttgtcataagcaattttt |
19402719 |
T |
|
| Q |
152 |
tg-accaaattaaaatacagatctggtgagttacactattaggtgaaattagatcctcaaatgggttgaaatcgatcaagagagagatcgtgaagaacaa |
250 |
Q |
| |
|
| |||||||||||||||||||||| ||| |||||||||||||||||| |||||||| ||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
19402720 |
tttaccaaattaaaatacagatctgatgaattacactattaggtgaaactagatccttaaatgggttgaaatcaatcaagagagagatcgtgaagaacaa |
19402819 |
T |
|
| Q |
251 |
agattaaagaacacagaca |
269 |
Q |
| |
|
|||||||| |||||||||| |
|
|
| T |
19402820 |
agattaaaaaacacagaca |
19402838 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 151; Significance: 6e-80; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 151; E-Value: 6e-80
Query Start/End: Original strand, 52 - 269
Target Start/End: Complemental strand, 34064650 - 34064432
Alignment:
| Q |
52 |
caattgacaataaaccataaacaatacttttccttatcatatagcagagttcctaactttatatcggtgaataattgattccttatcataagcaagtttt |
151 |
Q |
| |
|
||||||||||||||||||| ||| ||||||||||||||||||||||||||| |||||||| ||||||||| |||||||||||| |||||||||| |||| |
|
|
| T |
34064650 |
caattgacaataaaccatagacagtacttttccttatcatatagcagagtttctaactttctatcggtgaggaattgattccttgtcataagcaattttt |
34064551 |
T |
|
| Q |
152 |
tga-ccaaattaaaatacagatctggtgagttacactattaggtgaaattagatcctcaaatgggttgaaatcgatcaagagagagatcgtgaagaacaa |
250 |
Q |
| |
|
| | ||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||| |||||||||| ||||||||||| |||||||||||||| |
|
|
| T |
34064550 |
ttaaccaaattaaaatacagatctggtgaattacactattaggtgaaactagatcctcaaataggttgaaatcaatcaagagagaaatcgtgaagaacaa |
34064451 |
T |
|
| Q |
251 |
agattaaagaacacagaca |
269 |
Q |
| |
|
|||||||| |||||||||| |
|
|
| T |
34064450 |
agattaaaaaacacagaca |
34064432 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 174 - 269
Target Start/End: Complemental strand, 23206687 - 23206592
Alignment:
| Q |
174 |
tggtgagttacactattaggtgaaattagatcctcaaatgggttgaaatcgatcaagagagagatcgtgaagaacaaagattaaagaacacagaca |
269 |
Q |
| |
|
|||||| |||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
23206687 |
tggtgaattacactattaggtgaaaccagatcctcaaatgggttgaaatcgatcaaaagagagatcgtgaagaacaaagattaaaaaacacagaca |
23206592 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 85; Significance: 1e-40; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 153 - 265
Target Start/End: Original strand, 54316228 - 54316340
Alignment:
| Q |
153 |
gaccaaattaaaatacagatctggtgagttacactattaggtgaaattagatcctcaaatgggttgaaatcgatcaagagagagatcgtgaagaacaaag |
252 |
Q |
| |
|
||||||||||||||| ||||||| | ||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||| |||||||||||| |
|
|
| T |
54316228 |
gaccaaattaaaatatagatctgctcagttacactattaggtgaaattagatcatcaaatgggttgaaaacgatcaagagagagatcatgaagaacaaag |
54316327 |
T |
|
| Q |
253 |
attaaagaacaca |
265 |
Q |
| |
|
|||||| |||||| |
|
|
| T |
54316328 |
attaaaaaacaca |
54316340 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 106 - 170
Target Start/End: Original strand, 54314994 - 54315058
Alignment:
| Q |
106 |
aactttatatcggtgaataattgattccttatcataagcaagtttttgaccaaattaaaatacag |
170 |
Q |
| |
|
|||||| ||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
54314994 |
aactttctatcggtgagtaattgattccttatcataagcaattttttgaccaaattaaaatacag |
54315058 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University