View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8621_high_3 (Length: 411)

Name: NF8621_high_3
Description: NF8621
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8621_high_3
NF8621_high_3
[»] chr2 (2 HSPs)
chr2 (102-410)||(18031190-18031494)
chr2 (12-52)||(18031100-18031140)
[»] chr4 (1 HSPs)
chr4 (114-277)||(55156474-55156642)
[»] chr3 (4 HSPs)
chr3 (102-276)||(29642020-29642198)
chr3 (146-196)||(4803977-4804027)
chr3 (146-193)||(10535703-10535750)
chr3 (279-313)||(48101527-48101561)
[»] chr7 (2 HSPs)
chr7 (108-177)||(22002453-22002522)
chr7 (297-337)||(22002229-22002269)
[»] chr8 (2 HSPs)
chr8 (106-202)||(32309433-32309529)
chr8 (282-411)||(32309138-32309266)
[»] chr6 (5 HSPs)
chr6 (106-202)||(33364663-33364759)
chr6 (282-411)||(33364368-33364496)
chr6 (279-314)||(22208490-22208525)
chr6 (279-321)||(16592721-16592763)
chr6 (281-331)||(33164133-33164183)
[»] chr1 (7 HSPs)
chr1 (106-202)||(30330131-30330227)
chr1 (282-411)||(30330394-30330522)
chr1 (146-193)||(25626139-25626186)
chr1 (279-313)||(9934245-9934279)
chr1 (281-331)||(24208117-24208167)
chr1 (281-331)||(45027897-45027947)
chr1 (281-331)||(45032745-45032795)
[»] scaffold0009 (1 HSPs)
scaffold0009 (146-193)||(89640-89687)


Alignment Details
Target: chr2 (Bit Score: 230; Significance: 1e-127; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 102 - 410
Target Start/End: Original strand, 18031190 - 18031494
Alignment:
Q  102 gcacataaatctcaagcttattccacttttcttcattttcttaatcacattaaaacacaatttgaaagagatataaaatgttttcaacgtgataacagaa 201  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||    
T  18031190 gcacataaatctcaagcttattccacttttcttcattttcttaatcacattaaaacacaatttaaaagagatataaaatgttttcaatgtgataacagaa 18031289  T
Q  202 aacaatatgacaata-ttcttttcataatgtaaacataatggaatgagctttcagttttcttgtacccacacctcacatcattttggcatcatgctcttc 300  Q
    || |||||||||||| |||||||||||||||||| |||||||||||||||| || ||||||||| ||||||||||||||| ||||| |||||||||||||    
T  18031290 aagaatatgacaatacttcttttcataatgtaaatataatggaatgagcttccaattttcttgtccccacacctcacatctttttgacatcatgctcttc 18031389  T
Q  301 atatggctacttatttgttaattattcttccaaccaaacaattagctcttcaaacaccaaatacaattttttaaccaaaaatgtccctccaattctcaac 400  Q
    ||||| |||||||||||||||||||||||||     |||||||||||||||||||||||||||||||||||| |||||||| |||||||| |||||||||    
T  18031390 atatgactacttatttgttaattattcttcc-----aacaattagctcttcaaacaccaaatacaatttttttaccaaaaacgtccctcctattctcaac 18031484  T
Q  401 ttaaagtctt 410  Q
    ||||||||||    
T  18031485 ttaaagtctt 18031494  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 12 - 52
Target Start/End: Original strand, 18031100 - 18031140
Alignment:
Q  12 tggacatcagcaactcttggtcctggtggtcatcgttactc 52  Q
    ||||||||| |||||||||||| ||||||||||||||||||    
T  18031100 tggacatcaacaactcttggtcatggtggtcatcgttactc 18031140  T

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Target: chr4 (Bit Score: 84; Significance: 9e-40; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 114 - 277
Target Start/End: Original strand, 55156474 - 55156642
Alignment:
Q  114 caagcttattccacttttcttcattttcttaatcacattaaaacacaatttgaaagagatataaaatgttttcaacgtgataacagaaaacaatatgaca 213  Q
    |||| |||||||| ||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| |||||||||    
T  55156474 caagtttattccatttttcttcattttcgcaatcacattaaaacacaatttgaaagagatataaaatgttttcaatgtgataacggaaaagaatatgaca 55156573  T
Q  214 ata-ttcttttcataa----tgtaaacataatggaatgagctttcagttttcttgtacccacacctcac 277  Q
    ||| ||||||  ||||    |||||||| ||||||||||||||   |||||||||| | ||||||||||    
T  55156574 atacttctttctataatttctgtaaacaaaatggaatgagcttctggttttcttgtcctcacacctcac 55156642  T

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Target: chr3 (Bit Score: 83; Significance: 3e-39; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 102 - 276
Target Start/End: Original strand, 29642020 - 29642198
Alignment:
Q  102 gcacataaatctcaagcttattccacttttcttcattttcttaatcacattaaaacacaatttgaaagagatataaaatgttttcaacgtgataacagaa 201  Q
    ||||| ||||||||||||| ||||||||||||| ||||||  ||||||||||||||||||||| ||||||||||| ||||||||||| |||||||| |||    
T  29642020 gcacacaaatctcaagctttttccacttttctttattttcgcaatcacattaaaacacaatttaaaagagatatacaatgttttcaatgtgataacggaa 29642119  T
Q  202 aacaatatgacaa-tattcttttcataa----tgtaaacataatggaatgagctttcagttttcttgtacccacacctca 276  Q
    || |||||||||| | |||||| |||||    |||||||| ||||||| |||||| |||||||||||| | |||||||||    
T  29642120 aataatatgacaattcttctttccataatctttgtaaacaaaatggaa-gagcttccagttttcttgtcctcacacctca 29642198  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 146 - 196
Target Start/End: Complemental strand, 4804027 - 4803977
Alignment:
Q  146 tcacattaaaacacaatttgaaagagatataaaatgttttcaacgtgataa 196  Q
    |||||||||||||||||||||| | || ||||||||||||||| |||||||    
T  4804027 tcacattaaaacacaatttgaacgtgaaataaaatgttttcaatgtgataa 4803977  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 146 - 193
Target Start/End: Complemental strand, 10535750 - 10535703
Alignment:
Q  146 tcacattaaaacacaatttgaaagagatataaaatgttttcaacgtga 193  Q
    |||||||||||||||||||||| | || ||||||||||||||| ||||    
T  10535750 tcacattaaaacacaatttgaacgtgaaataaaatgttttcaatgtga 10535703  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 279 - 313
Target Start/End: Complemental strand, 48101561 - 48101527
Alignment:
Q  279 tcattttggcatcatgctcttcatatggctactta 313  Q
    ||||||||||||||||||||||| |||||||||||    
T  48101561 tcattttggcatcatgctcttcaaatggctactta 48101527  T

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Target: chr7 (Bit Score: 54; Significance: 7e-22; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 108 - 177
Target Start/End: Complemental strand, 22002522 - 22002453
Alignment:
Q  108 aaatctcaagcttattccacttttcttcattttcttaatcacattaaaacacaatttgaaagagatataa 177  Q
    |||||||||||||||||||||||| ||||||||| |||||| ||||||||| ||||||||||||||||||    
T  22002522 aaatctcaagcttattccacttttattcattttcctaatcaaattaaaacaaaatttgaaagagatataa 22002453  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 297 - 337
Target Start/End: Complemental strand, 22002269 - 22002229
Alignment:
Q  297 cttcatatggctacttatttgttaattattcttccaaccaa 337  Q
    ||||||||| | ||||||||||||| |||||||||||||||    
T  22002269 cttcatatgaccacttatttgttaaatattcttccaaccaa 22002229  T

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Target: chr8 (Bit Score: 53; Significance: 3e-21; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 106 - 202
Target Start/End: Complemental strand, 32309529 - 32309433
Alignment:
Q  106 ataaatctcaagcttattccacttttcttcattttcttaatcacattaaaacacaatttgaaagagatataaaatgttttcaacgtgataacagaaa 202  Q
    ||||||| |||||| | |||| |||||| || |||  ||||||||||||||||||||||||||||||||| |||||||||||| |||||||| ||||    
T  32309529 ataaatcacaagctcactccatttttctccaattttgtaatcacattaaaacacaatttgaaagagatattaaatgttttcaatgtgataacggaaa 32309433  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 282 - 411
Target Start/End: Complemental strand, 32309266 - 32309138
Alignment:
Q  282 ttttggcatcatgctcttcatatggctacttatttgttaattattcttccaaccaaacaattagctcttcaaacaccaaatacaattttttaaccaaaaa 381  Q
    ||||||||||| || ||||| |||||||||||| | ||||  || || || |||||  || ||||||||||||||||||  |||||| | | ||||||||    
T  32309266 ttttggcatcacgcacttcaaatggctacttatctcttaaacatcctacccaccaagaaactagctcttcaaacaccaaccacaattctct-accaaaaa 32309168  T
Q  382 tgtccctccaattctcaacttaaagtcttt 411  Q
    | ||| ||| | ||||| ||||||||||||    
T  32309167 tctccatcctactctcatcttaaagtcttt 32309138  T

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Target: chr6 (Bit Score: 53; Significance: 3e-21; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 106 - 202
Target Start/End: Complemental strand, 33364759 - 33364663
Alignment:
Q  106 ataaatctcaagcttattccacttttcttcattttcttaatcacattaaaacacaatttgaaagagatataaaatgttttcaacgtgataacagaaa 202  Q
    ||||||| |||||| | |||| |||||| || |||| |||||||||||||||||||||||||| |||||| |||||||||||| |||||||| ||||    
T  33364759 ataaatcacaagctcactccatttttctccaatttcgtaatcacattaaaacacaatttgaaaaagatattaaatgttttcaatgtgataacggaaa 33364663  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 282 - 411
Target Start/End: Complemental strand, 33364496 - 33364368
Alignment:
Q  282 ttttggcatcatgctcttcatatggctacttatttgttaattattcttccaaccaaacaattagctcttcaaacaccaaatacaattttttaaccaaaaa 381  Q
    ||||||||||| || ||||| |||||||||||| | ||||  || || || |||||  || ||||||||||||||||||  |||||| | | ||||||||    
T  33364496 ttttggcatcacgcacttcaaatggctacttatctcttaaacatcctacccaccaagaaactagctcttcaaacaccaaccacaattctct-accaaaaa 33364398  T
Q  382 tgtccctccaattctcaacttaaagtcttt 411  Q
    | ||| ||| | ||||| ||||||||||||    
T  33364397 tctccatcctactctcatcttaaagtcttt 33364368  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 279 - 314
Target Start/End: Complemental strand, 22208525 - 22208490
Alignment:
Q  279 tcattttggcatcatgctcttcatatggctacttat 314  Q
    ||||||||||||||||||||||| ||||||||||||    
T  22208525 tcattttggcatcatgctcttcaaatggctacttat 22208490  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 279 - 321
Target Start/End: Original strand, 16592721 - 16592763
Alignment:
Q  279 tcattttggcatcatgctcttcatatggctacttatttgttaa 321  Q
    ||||||||||||||||||||||| ||||| |||||| ||||||    
T  16592721 tcattttggcatcatgctcttcacatggcaacttatatgttaa 16592763  T

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Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 281 - 331
Target Start/End: Original strand, 33164133 - 33164183
Alignment:
Q  281 attttggcatcatgctcttcatatggctacttatttgttaattattcttcc 331  Q
    ||||||||||||||| ||||| ||||| ||||||||| ||| |||||||||    
T  33164133 attttggcatcatgcacttcacatggcaacttatttgctaaatattcttcc 33164183  T

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Target: chr1 (Bit Score: 53; Significance: 3e-21; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 106 - 202
Target Start/End: Original strand, 30330131 - 30330227
Alignment:
Q  106 ataaatctcaagcttattccacttttcttcattttcttaatcacattaaaacacaatttgaaagagatataaaatgttttcaacgtgataacagaaa 202  Q
    ||||||| |||||| | |||| |||||| || |||| |||||||||||||||||||||||||| |||||| |||||||||||| |||||||| ||||    
T  30330131 ataaatcacaagctcactccatttttctccaatttcgtaatcacattaaaacacaatttgaaaaagatattaaatgttttcaatgtgataacggaaa 30330227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 282 - 411
Target Start/End: Original strand, 30330394 - 30330522
Alignment:
Q  282 ttttggcatcatgctcttcatatggctacttatttgttaattattcttccaaccaaacaattagctcttcaaacaccaaatacaattttttaaccaaaaa 381  Q
    ||||||||||| || ||||| |||||||||||| | ||||  || || || |||||  || ||||||||||||||||||  |||||| | | ||||||||    
T  30330394 ttttggcatcacgcacttcaaatggctacttatctcttaaacatcctacccaccaagaaactagctcttcaaacaccaaccacaattctct-accaaaaa 30330492  T
Q  382 tgtccctccaattctcaacttaaagtcttt 411  Q
    | ||| ||| | ||||| ||||||||||||    
T  30330493 tctccatcctactctcatcttaaagtcttt 30330522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 146 - 193
Target Start/End: Complemental strand, 25626186 - 25626139
Alignment:
Q  146 tcacattaaaacacaatttgaaagagatataaaatgttttcaacgtga 193  Q
    |||||||||||||||||||||| | || ||||||||||||||| ||||    
T  25626186 tcacattaaaacacaatttgaacgtgaaataaaatgttttcaatgtga 25626139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 279 - 313
Target Start/End: Complemental strand, 9934279 - 9934245
Alignment:
Q  279 tcattttggcatcatgctcttcatatggctactta 313  Q
    ||||||||||||||||||||||| |||||||||||    
T  9934279 tcattttggcatcatgctcttcaaatggctactta 9934245  T

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Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 281 - 331
Target Start/End: Original strand, 24208117 - 24208167
Alignment:
Q  281 attttggcatcatgctcttcatatggctacttatttgttaattattcttcc 331  Q
    ||||||||||||||| ||||| ||||| ||||||||| ||| |||||||||    
T  24208117 attttggcatcatgcacttcacatggcaacttatttgctaaatattcttcc 24208167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 281 - 331
Target Start/End: Original strand, 45027897 - 45027947
Alignment:
Q  281 attttggcatcatgctcttcatatggctacttatttgttaattattcttcc 331  Q
    ||||||||||||||| ||||| ||||| ||||||||| ||| |||||||||    
T  45027897 attttggcatcatgcacttcacatggcaacttatttgctaaatattcttcc 45027947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 281 - 331
Target Start/End: Original strand, 45032745 - 45032795
Alignment:
Q  281 attttggcatcatgctcttcatatggctacttatttgttaattattcttcc 331  Q
    ||||||||||||||| ||||| ||||| ||||||||| ||| |||||||||    
T  45032745 attttggcatcatgcacttcacatggcaacttatttgctaaatattcttcc 45032795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 146 - 193
Target Start/End: Original strand, 89640 - 89687
Alignment:
Q  146 tcacattaaaacacaatttgaaagagatataaaatgttttcaacgtga 193  Q
    |||||||||||||||||||||| | || ||||||||||||||| ||||    
T  89640 tcacattaaaacacaatttgaacgtgaaataaaatgttttcaatgtga 89687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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